Gene: AT2G38250

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G38250
  • Transcript Identifier AT2G38250.1
  • Gene Type Coding gene
  • Location Chr2 : 16018384-16019500 : positive

Gene Family Information

  • ID HOM05D002384
  • #Genes/#Species 285/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G38250.1
  • uniprot O80450

Descriptions

  • Description Homeodomain-like superfamily protein
  • Computational description Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleolus; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G01380.1); Has 3356 Blast hits to 2254 proteins in 222 species: Archae - 0; Bacteria - 69; Metazoa - 1338; Fungi - 313; Plants - 554; Viruses - 7; Other Eukaryotes - 1075 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043565
IEA
Gene Ontologysequence-specific DNA binding
GO:0043565
IEA
InterProsequence-specific DNA binding
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus3
GO:0005634
IEA
InterPronucleus
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus4
GO:0016592
IDA
Gene Ontologymediator complex5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044822 Myb/SANT-like DNA-binding domain 4
IPR001005 SANT/Myb domain
IPR027759 Trihelix transcription factor GT3
Mapman id Description
15.5.20 RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix)