Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p03070 Brassica napus
A01p31320 Brassica napus
A03p56520 Brassica napus
A04p20960 Brassica napus
A06p16660 Brassica napus
A07p18210 Brassica napus
Aa31LG5G8780 Aethionema arabicum
Aa31LG6G12510 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1450 Anthoceros agrestis
Actinidia16798 Actinidia chinensis
Actinidia35467 Actinidia chinensis
Actinidia37079 Actinidia chinensis
Ah.08g215660 Amaranthus hybridus
Ah.09g233540 Amaranthus hybridus
AL4G21410 Arabidopsis lyrata
AL7G15620 Arabidopsis lyrata
Aqoxy1G02082 Aquilegia oxysepala
Aqoxy2G01110 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.65JLCH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AW3P0S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EJ6Q9X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EN3ZRJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GRS0A1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MKCD0D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R0HYNC Arachis hypogaea
AT2G27450 Arabidopsis thaliana
AT4G35540 Arabidopsis thaliana
ATR0582G311 Amborella trichopoda
ATR0794G026 Amborella trichopoda
ATR0794G076 Amborella trichopoda
ATR0820G136 Amborella trichopoda
Atru.chr10.1674 Acer truncatum
Atru.chr10.1675 Acer truncatum
Atru.chr2.3891 Acer truncatum
Atru.chr3.3215 Acer truncatum
AUR62009748 Chenopodium quinoa
AUR62027671 Chenopodium quinoa
AUR62031197 Chenopodium quinoa
AUR62036197 Chenopodium quinoa
AUR62036936 Chenopodium quinoa
BcaB03g12416 Brassica carinata
BcaC01g00499 Brassica carinata
BcaC02g10875 Brassica carinata
BcaNung00583 Brassica carinata
BcaNung03635 Brassica carinata
BcaNung03636 Brassica carinata
BcaNung03637 Brassica carinata
BolC1t00329H Brassica oleracea
BolC3t20315H Brassica oleracea
BolC3t20316H Brassica oleracea
BolC4t23912H Brassica oleracea
BolC4t27207H Brassica oleracea
BraA01t00291Z Brassica rapa
BraA04t17665Z Brassica rapa
BraA07t29537Z Brassica rapa
C01p03420 Brassica napus
C03p80710 Brassica napus
C04p24150 Brassica napus
C04p56750 Brassica napus
CAN.G1524.8 Capsicum annuum
CAN.G943.27 Capsicum annuum
CANSAT54G0294 Cannabis sativa
CANSAT54G2275 Cannabis sativa
CARHR120040 Cardamine hirsuta
CARHR243880 Cardamine hirsuta
Carub.0004s0807 Capsella rubella
Ca_00873_v3 Cicer arietinum L.
Ca_01654_v3 Cicer arietinum L.
CBR_g23798 Chara braunii
CBR_g2849 Chara braunii
CBR_g51781 Chara braunii
Cc01_g08990 Coffea canephora
Cc02_g14860 Coffea canephora
Cc10_g13580 Coffea canephora
CDE02G4213 Ceratophyllum demersum
CDE08G1107 Ceratophyllum demersum
Cfa000603 Carpinus fangiana
Cfa010006 Carpinus fangiana
Ciclev10028933m.g Citrus clementina
Ciclev10031207m.g Citrus clementina
CiPaw.10G058500 Carya illinoinensis
CiPaw.13G135000 Carya illinoinensis
CiPaw.14G099400 Carya illinoinensis
ClCG01G012180 Citrullus lanatus
ClCG01G012190 Citrullus lanatus
ClCG03G007760 Citrullus lanatus
COL.COLO4_08893 Corchorus olitorius
Cpa.g.sc195.1 Carica papaya
Cpa.g.sc7.51 Carica papaya
Cre01.g035300 Chlamydomonas reinhardtii
Cre12.g535750 Chlamydomonas reinhardtii
CsaV3_1G015010 Cucumis sativus L.
CsaV3_1G015920 Cucumis sativus L.
CsaV3_1G033380 Cucumis sativus L.
CSS0007657 Camellia sinensis var. sinensis
CSS0011924 Camellia sinensis var. sinensis
CSS0015305 Camellia sinensis var. sinensis
CSS0021330 Camellia sinensis var. sinensis
CSS0028747 Camellia sinensis var. sinensis
CSS0032678 Camellia sinensis var. sinensis
CSS0032914 Camellia sinensis var. sinensis
CSS0045463 Camellia sinensis var. sinensis
DCAR_005225 Daucus carota
DCAR_010340 Daucus carota
DCAR_030917 Daucus carota
Dinv22835 Davidia involucrata
Dinv32217 Davidia involucrata
Duzib138G0048 Durio zibethinus
Duzib150G1080 Durio zibethinus
Duzib170G1110 Durio zibethinus
ECA247G1464 Erigeron canadensis
ECA248G0812 Erigeron canadensis
EL10Ac7g15831 Beta vulgaris
EL10Ac8g20603 Beta vulgaris
Eucgr.J00500 Eucalyptus grandis
FAN02G0479 Fragaria x ananassa
FAN02G2027 Fragaria x ananassa
FAN05G0140 Fragaria x ananassa
FAN05G0862 Fragaria x ananassa
FAN05G1035 Fragaria x ananassa
FAN05G5039 Fragaria x ananassa
FAN06G1043 Fragaria x ananassa
FAN10G3983 Fragaria x ananassa
FAN11G3385 Fragaria x ananassa
FAN14G0023 Fragaria x ananassa
FAN14G1453 Fragaria x ananassa
FAN14G3958 Fragaria x ananassa
FAN16G2383 Fragaria x ananassa
FAN21G3331 Fragaria x ananassa
FAN25G0986 Fragaria x ananassa
FAN25G3385 Fragaria x ananassa
FvH4_3g25110 Fragaria vesca
FvH4_6g24910 Fragaria vesca
Glyma.01G042900 Glycine max
Glyma.04G157100 Glycine max
Glyma.12G185700 Glycine max
Glyma.13G315800 Glycine max
Gohir.A09G096100 Gossypium hirsutum
Gohir.A11G156900 Gossypium hirsutum
Gohir.D09G095800 Gossypium hirsutum
Gohir.D11G163900 Gossypium hirsutum
Gohir.D13G227000 Gossypium hirsutum
Gorai.006G112500 Gossypium raimondii
Gorai.007G174700 Gossypium raimondii
GSVIVG01021206001 Vitis vinifera
GSVIVG01026940001 Vitis vinifera
GSVIVG01036111001 Vitis vinifera
HanXRQChr01g0024511 Helianthus annuus
HanXRQChr16g0517751 Helianthus annuus
HanXRQChr16g0518151 Helianthus annuus
HanXRQChr16g0518871 Helianthus annuus
HanXRQChr16g0520661 Helianthus annuus
Haze_06238 Corylus avellana
Haze_23365 Corylus avellana
Hma1.2p1_0587F.1_g184230 Hydrangea macrophylla
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla
HPP92_006302 Vanilla planifolia
HPP92_023068 Vanilla planifolia
Hund18762 Selenicereus undatus
Lalb_Chr18g0054471 Lupinus albus
Lalb_Chr24g0393531 Lupinus albus
Lj1P636T28 Lonicera japonica
Lj2A298G34 Lonicera japonica
Lj2A965T21 Lonicera japonica
Lj3g0018005 Lotus japonicus
Lj6g0008317 Lotus japonicus
Lsat_1_v5_gn_1_59241 Lactuca sativa
Lsat_1_v5_gn_4_49520 Lactuca sativa
Manes.04G002800 Manihot esculenta
Manes.06G033800 Manihot esculenta
Manes.11G162650 Manihot esculenta
Mapoly0022s0109 Marchantia polymorpha
Mapoly0103s0045 Marchantia polymorpha
MBI18_g09632_MAGBIO Magnolia biondii
MCO04G551 Micromonas commoda
MD03G1147500 Malus domestica
MD05G1301900 Malus domestica
MD11G1166200 Malus domestica
Medtr2g031410 Medicago truncatula
Medtr2g086600 Medicago truncatula
MELO3C002646.2 Cucumis melo
MELO3C004683.2 Cucumis melo
MELO3C027387.2 Cucumis melo
Migut.H00865 Erythranthe guttata
Migut.M01042 Erythranthe guttata
Migut.N02484 Erythranthe guttata
MSTRG.12373 Avicennia marina
MSTRG.17703 Avicennia marina
MSTRG.7403 Avicennia marina
Nitab4.5_0000755g0010 Nicotiana tabacum
Nitab4.5_0001189g0060 Nicotiana tabacum
Nitab4.5_0002076g0140 Nicotiana tabacum
Nitab4.5_0006738g0010 Nicotiana tabacum
Nitab4.5_0007975g0050 Nicotiana tabacum
Nn1g04395 Nelumbo nucifera
Nn2g14191 Nelumbo nucifera
Nn3g21334 Nelumbo nucifera
Oeu002370.1 Olea europaea
Oeu017495.1 Olea europaea
Oeu030709.1 Olea europaea
Oeu035434.1 Olea europaea
Os02g0533900 Oryza sativa ssp. japonica
Os08g0532500 Oryza sativa ssp. japonica
Peaxi162Scf00040g00113 Petunia axillaris
Peaxi162Scf00753g00411 Petunia axillaris
PGR004G1505 Punica granatum
PGR119G2253 Punica granatum
PGSC0003DMG400004381 Solanum tuberosum
PGSC0003DMG400026336 Solanum tuberosum
Phvul.002G066000 Phaseolus vulgaris
Phvul.005G123100 Phaseolus vulgaris
Potri.004G084700 Populus trichocarpa
Potri.004G201400 Populus trichocarpa
Potri.009G162600 Populus trichocarpa
Pp3c18_8260 Physcomitrium patens
Pp3c3_11130 Physcomitrium patens
PRCOL_00003112 Prasinoderma coloniale
Prupe.4G060500 Prunus persica
Prupe.6G132000 Prunus persica
Psat1g166240 Pisum sativum
Psat1g178360 Pisum sativum
Psat5g258120 Pisum sativum
Psat6g197040 Pisum sativum
PSO339G0254 Papaver somniferum
PSO541G5199 Papaver somniferum
PSO675G9291 Papaver somniferum
PSO801G0423 Papaver somniferum
QL01p012128 Quercus lobata
QL05p046957 Quercus lobata
RcHm_v2.0_Chr5g0010711 Rosa chinensis
RcHm_v2.0_Chr5g0045651 Rosa chinensis
RcHm_v2.0_Chr5g0046351 Rosa chinensis
Rhsim01G0204800 Rhododendron simsii
Rhsim09G0087800 Rhododendron simsii
Rhsim13G0190300 Rhododendron simsii
RhsimUnG0183700 Rhododendron simsii
Sabra04G0055900 Salix brachista
Sabra04G0094200 Salix brachista
Sabra04G0136100 Salix brachista
SalBow3G4661 Salvia bowleyana
SalBow4G0953 Salvia bowleyana
Sc05g0007130 Simmondsia chinensis
Sc05g0007150 Simmondsia chinensis
Sc21g0007050 Simmondsia chinensis
Sed0024643 Sechium edule
Sed0026919 Sechium edule
SEGI_17381 Sequoiadendron giganteum
SEGI_19864 Sequoiadendron giganteum
SEGI_22372 Sequoiadendron giganteum
SEGI_36544 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00039 Striga asiatica
SGA_v2.0_scaffold295G47518 Striga asiatica
SHI12384 Sapria himalayana
SHI24483 Sapria himalayana
SMO137G0058 Selaginella moellendorffii
SMO331G0008 Selaginella moellendorffii
Solyc03g006177.2 Solanum lycopersicum
Solyc05g023840.1 Solanum lycopersicum
Solyc11g068540.2 Solanum lycopersicum
Sopen03g002200 Solanum pennellii
Sopen11g027260 Solanum pennellii
Sp4g10240 Schrenkiella parvula
Sp7g33320 Schrenkiella parvula
TAR627G0524 Trochodendron aralioides
TAR627G0992 Trochodendron aralioides
TAR633G2567 Trochodendron aralioides
TAR698G0001 Trochodendron aralioides
THA.LOC104800525 Tarenaya hassleriana
THA.LOC104826428 Tarenaya hassleriana
THA.LOC104826474 Tarenaya hassleriana
THA.LOC104827541 Tarenaya hassleriana
Thecc.01G169900 Theobroma cacao
Thecc.09G281400 Theobroma cacao
Thhalv10017003m.g Eutrema salsugineum
Thhalv10027569m.g Eutrema salsugineum
TPR.G22268 Trifolium pratense
TPR.G39999 Trifolium pratense
TPR.G4472 Trifolium pratense
TWI38G1256 Tripterygium wilfordii
TWI75G0919 Tripterygium wilfordii
TWI79G1300 Tripterygium wilfordii
unitig_0.g555 Utricularia gibba
unitig_736.g22955 Utricularia gibba
vmacro14352 Vaccinium macrocarpon
VMungo1080G1495 Vigna mungo
VMungo1215G0129 Vigna mungo
Zm00001eb175250 Zea mays
Zm00001eb242790 Zea mays

User provided reference genes

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