Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p03840 Brassica napus
A09p58690 Brassica napus
Aa31LG1G25690 Aethionema arabicum
Aa31LG3G18140 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.597 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1436 Anthoceros agrestis
Actinidia01437 Actinidia chinensis
Actinidia01438 Actinidia chinensis
Actinidia04368 Actinidia chinensis
Actinidia09883 Actinidia chinensis
Actinidia11074 Actinidia chinensis
Actinidia30482 Actinidia chinensis
Actinidia39304 Actinidia chinensis
Ah.08g215550 Amaranthus hybridus
Ah.09g235870 Amaranthus hybridus
Ah.12g060870 Amaranthus hybridus
Ah.12g062140 Amaranthus hybridus
AL3G54090 Arabidopsis lyrata
AL3G54110 Arabidopsis lyrata
AL6G18880 Arabidopsis lyrata
Aqoxy1G02648 Aquilegia oxysepala
Aqoxy2G02280 Aquilegia oxysepala
Aqoxy6G02720 Aquilegia oxysepala
Aqoxy7G02133 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.MX7F3A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SS7YSV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XUM6CZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z3UMR9 Arachis hypogaea
AT2G20860 Arabidopsis thaliana
AT5G08415 Arabidopsis thaliana
ATR0165G020 Amborella trichopoda
ATR0693G089 Amborella trichopoda
Atru.BG.28.p Acer truncatum
Atru.chr11.34 Acer truncatum
Atru.chr6.2851 Acer truncatum
Atru.chr6.3044 Acer truncatum
AUR62000731 Chenopodium quinoa
AUR62005234 Chenopodium quinoa
AUR62014757 Chenopodium quinoa
AUR62016934 Chenopodium quinoa
AUR62036492 Chenopodium quinoa
AUR62037079 Chenopodium quinoa
BcaB01g05596 Brassica carinata
BcaB01g05598 Brassica carinata
BcaB08g34944 Brassica carinata
BcaC03g13228 Brassica carinata
BcaC07g41192 Brassica carinata
BolC2t06318H Brassica oleracea
BolC3t12966H Brassica oleracea
BolC8t51761H Brassica oleracea
BraA02t04957Z Brassica rapa
BraA03t09731Z Brassica rapa
BraA09t41255Z Brassica rapa
C02p03600 Brassica napus
C03p04330 Brassica napus
C08p41980 Brassica napus
CAN.G484.25 Capsicum annuum
CAN.G996.12 Capsicum annuum
CANSAT64G1618 Cannabis sativa
CANSAT78G1845 Cannabis sativa
CARHR111600 Cardamine hirsuta
CARHR204620 Cardamine hirsuta
Carub.0003s1300 Capsella rubella
Carub.0003s3552 Capsella rubella
Carub.0006s0733 Capsella rubella
Ca_01528_v3 Cicer arietinum L.
Ca_26189_v3 Cicer arietinum L.
CBR_g10962 Chara braunii
CBR_g54240 Chara braunii
Cc05_g06640 Coffea canephora
Cc11_g00380 Coffea canephora
CDE03G0329 Ceratophyllum demersum
CDE05G0148 Ceratophyllum demersum
CDE05G1172 Ceratophyllum demersum
CDE06G0564 Ceratophyllum demersum
Cfa008860 Carpinus fangiana
Cfa014563 Carpinus fangiana
Cfa024354 Carpinus fangiana
Ciclev10015632m.g Citrus clementina
Ciclev10015778m.g Citrus clementina
Ciclev10023687m.g Citrus clementina
Ciclev10026917m.g Citrus clementina
CiPaw.03G171600 Carya illinoinensis
CiPaw.05G123400 Carya illinoinensis
CiPaw.06G093400 Carya illinoinensis
ClCG02G001230 Citrullus lanatus
ClCG11G012780 Citrullus lanatus
COL.COLO4_13709 Corchorus olitorius
COL.COLO4_33152 Corchorus olitorius
Cpa.g.sc221.10 Carica papaya
Cpa.g.sc221.14 Carica papaya
Cpa.g.sc221.9 Carica papaya
Cre02.g114400 Chlamydomonas reinhardtii
Cre08.g359700 Chlamydomonas reinhardtii
CsaV3_5G029160 Cucumis sativus L.
CsaV3_7G004210 Cucumis sativus L.
CSS0017502 Camellia sinensis var. sinensis
CSS0017886 Camellia sinensis var. sinensis
DCAR_006118 Daucus carota
DCAR_012991 Daucus carota
DCAR_023496 Daucus carota
DCAR_026872 Daucus carota
Dinv01393 Davidia involucrata
Dinv01394 Davidia involucrata
Dinv17659 Davidia involucrata
Duzib052G0932 Durio zibethinus
Duzib132G0977 Durio zibethinus
ECA234G2427 Erigeron canadensis
ECA236G3284 Erigeron canadensis
EL10Ac3g05353 Beta vulgaris
EL10Ac7g17583 Beta vulgaris
EL10Ac8g19475 Beta vulgaris
Eucgr.J00329 Eucalyptus grandis
Eucgr.K00943 Eucalyptus grandis
FAN02G3640 Fragaria x ananassa
FAN05G0805 Fragaria x ananassa
FAN05G2490 Fragaria x ananassa
FAN07G1612 Fragaria x ananassa
FAN09G2949 Fragaria x ananassa
FAN14G2104 Fragaria x ananassa
FAN17G0720 Fragaria x ananassa
FvH4_4g37350 Fragaria vesca
FvH4_6g44960 Fragaria vesca
Glyma.10G279476 Glycine max
Glyma.10G279551 Glycine max
Glyma.13G299900 Glycine max
Glyma.20G110200 Glycine max
Glyma.U031222 Glycine max
Gohir.A03G168000 Gossypium hirsutum
Gohir.A13G056600 Gossypium hirsutum
Gohir.D02G191100 Gossypium hirsutum
Gohir.D13G065300 Gossypium hirsutum
Gorai.005G213900 Gossypium raimondii
Gorai.013G074500 Gossypium raimondii
GSVIVG01006944001 Vitis vinifera
GSVIVG01034350001 Vitis vinifera
HanXRQChr05g0142151 Helianthus annuus
HanXRQChr10g0289531 Helianthus annuus
HanXRQChr12g0358451 Helianthus annuus
HanXRQChr17g0559041 Helianthus annuus
Haze_11882 Corylus avellana
Haze_13108 Corylus avellana
Haze_26671 Corylus avellana
Haze_27334 Corylus avellana
Hma1.2p1_1355F.1_g277840 Hydrangea macrophylla
HPP92_015689 Vanilla planifolia
HPP92_016343 Vanilla planifolia
HPP92_016440 Vanilla planifolia
Hund10708 Selenicereus undatus
Hund13304 Selenicereus undatus
Hund14795 Selenicereus undatus
Hund23646 Selenicereus undatus
Lalb_Chr02g0146311 Lupinus albus
Lalb_Chr14g0366701 Lupinus albus
Lj2P967T14 Lonicera japonica
Lj3g0024444 Lotus japonicus
Lj5g0003140 Lotus japonicus
Lj6C706G10 Lonicera japonica
Lj8A115T59 Lonicera japonica
Lsat_1_v5_gn_4_70261 Lactuca sativa
Lsat_1_v5_gn_8_68401 Lactuca sativa
Manes.04G160700 Manihot esculenta
Manes.13G149900 Manihot esculenta
Mapoly0013s0196 Marchantia polymorpha
Mapoly0061s0116 Marchantia polymorpha
MBI02_g22347_MAGBIO Magnolia biondii
MBI02_g37077_MAGBIO Magnolia biondii
MCO03G161 Micromonas commoda
MCO14G288 Micromonas commoda
MD09G1091400 Malus domestica
MD12G1087800 Malus domestica
MD13G1000600 Malus domestica
MD16G1005000 Malus domestica
MD17G1081300 Malus domestica
Medtr1g050432 Medicago truncatula
Medtr1g069485 Medicago truncatula
Medtr2g090140 Medicago truncatula
MELO3C011768.2 Cucumis melo
MELO3C018756.2 Cucumis melo
MELO3C025098.2 Cucumis melo
MELO3C035404.2 Cucumis melo
Migut.E00590 Erythranthe guttata
Migut.H01037 Erythranthe guttata
MSTRG.12304 Avicennia marina
MSTRG.14192 Avicennia marina
MSTRG.2086 Avicennia marina
Nitab4.5_0000635g0130 Nicotiana tabacum
Nitab4.5_0001290g0040 Nicotiana tabacum
Nitab4.5_0002310g0020 Nicotiana tabacum
Nitab4.5_0002370g0020 Nicotiana tabacum
Nitab4.5_0003018g0100 Nicotiana tabacum
Nitab4.5_0010167g0010 Nicotiana tabacum
Nn1g03958 Nelumbo nucifera
Nn1g06688 Nelumbo nucifera
Nn2g12787 Nelumbo nucifera
Oeu006321.1 Olea europaea
Oeu027938.1 Olea europaea
Oeu041290.1 Olea europaea
Oeu047660.1 Olea europaea
Os04g0455800 Oryza sativa ssp. japonica
Os05g0511500 Oryza sativa ssp. japonica
Peaxi162Scf00007g02858 Petunia axillaris
Peaxi162Scf00272g00922 Petunia axillaris
PGR044G2486 Punica granatum
PGSC0003DMG400004642 Solanum tuberosum
PGSC0003DMG400018323 Solanum tuberosum
Phvul.005G072800 Phaseolus vulgaris
Phvul.005G106700 Phaseolus vulgaris
Phvul.007G021800 Phaseolus vulgaris
Potri.005G086200 Populus trichocarpa
Potri.007G078400 Populus trichocarpa
Potri.013G136000 Populus trichocarpa
Potri.019G102700 Populus trichocarpa
Pp3c12_13440 Physcomitrium patens
Pp3c22_7200 Physcomitrium patens
Pp3c4_9900 Physcomitrium patens
PRCOL_00004654 Prasinoderma coloniale
PRCOL_00005096 Prasinoderma coloniale
Prupe.1G352000 Prunus persica
Prupe.3G233600 Prunus persica
Psat5g270520 Pisum sativum
Psat6g094680 Pisum sativum
Psat6g139920 Pisum sativum
PSO063G5798 Papaver somniferum
PSO541G5212 Papaver somniferum
PSO675G6690 Papaver somniferum
PSO782G4260 Papaver somniferum
QL03p073666 Quercus lobata
QL08p037635 Quercus lobata
QL08p055297 Quercus lobata
QL10p018006 Quercus lobata
QL10p018049 Quercus lobata
QL10p018789 Quercus lobata
QL11p004889 Quercus lobata
QL93p0191_0029 Quercus lobata
RcHm_v2.0_Chr1g0348111 Rosa chinensis
RcHm_v2.0_Chr2g0162201 Rosa chinensis
RcHm_v2.0_Chr4g0401871 Rosa chinensis
RcHm_v2.0_Chr4g0447211 Rosa chinensis
Rhsim06G0149300 Rhododendron simsii
Rhsim09G0155100 Rhododendron simsii
Sabra07G0066100 Salix brachista
Sabra13G0115300 Salix brachista
Sabra19G0113600 Salix brachista
SalBow1G4908 Salvia bowleyana
Sc17g0003970 Simmondsia chinensis
Sc17g0006430 Simmondsia chinensis
Sed0005410 Sechium edule
Sed0017971 Sechium edule
Sed0021807 Sechium edule
SEGI_07534 Sequoiadendron giganteum
SEGI_17190 Sequoiadendron giganteum
SEGI_19742 Sequoiadendron giganteum
SEGI_27983 Sequoiadendron giganteum
SGA_v2.0_scaffold109G31094 Striga asiatica
SGA_v2.0_scaffold329G48880 Striga asiatica
SGA_v2.0_scaffold65G22160 Striga asiatica
SGA_v2.0_scaffold96G29025 Striga asiatica
SHI21158 Sapria himalayana
SMO271G0129 Selaginella moellendorffii
SMO365G0047 Selaginella moellendorffii
Solyc07g054540.4 Solanum lycopersicum
Solyc08g068440.4 Solanum lycopersicum
Solyc12g099700.3 Solanum lycopersicum
Sopen07g028450 Solanum pennellii
Sopen12g034340 Solanum pennellii
Sp3g34110 Schrenkiella parvula
Sp6g34520 Schrenkiella parvula
TAR624G0268 Trochodendron aralioides
TAR626G0544 Trochodendron aralioides
TAR626G1041 Trochodendron aralioides
THA.LOC104804071 Tarenaya hassleriana
THA.LOC104818389 Tarenaya hassleriana
Thecc.02G151900 Theobroma cacao
Thecc.02G174300 Theobroma cacao
Thhalv10002016m.g Eutrema salsugineum
Thhalv10013747m.g Eutrema salsugineum
TPR.G10634 Trifolium pratense
TPR.G35551 Trifolium pratense
TWI56G0732 Tripterygium wilfordii
TWI77G0577 Tripterygium wilfordii
unitig_749.g13951 Utricularia gibba
unitig_8.g4026 Utricularia gibba
vmacro12270 Vaccinium macrocarpon
vmacro16163 Vaccinium macrocarpon
VMungo0720G2290 Vigna mungo
VMungo1080G0992 Vigna mungo
VMungo1080G1545 Vigna mungo
Zm00001eb081090 Zea mays
Zm00001eb152040 Zea mays
Zm00001eb370140 Zea mays

User provided reference genes

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