Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p09650 Brassica napus
A02p30890 Brassica napus
A06p45260 Brassica napus
A08p13240 Brassica napus
A09p22880 Brassica napus
Aa31LG6G320 Aethionema arabicum
Aa31sc58G70 Aethionema arabicum
Actinidia02189 Actinidia chinensis
Actinidia10862 Actinidia chinensis
Actinidia25905 Actinidia chinensis
Actinidia31497 Actinidia chinensis
Ah.07g199080 Amaranthus hybridus
AL7G37030 Arabidopsis lyrata
AL8G10950 Arabidopsis lyrata
Aqoxy219s004 Aquilegia oxysepala
Aqoxy219s005 Aquilegia oxysepala
Aqoxy3G02671 Aquilegia oxysepala
Aqoxy3G02672 Aquilegia oxysepala
Aqoxy3G03764 Aquilegia oxysepala
Aqoxy5G02397 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.KS94ZA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KVTA87 Arachis hypogaea
AT4G17570 Arabidopsis thaliana
AT5G47140 Arabidopsis thaliana
ATR0626G374 Amborella trichopoda
ATR0665G197 Amborella trichopoda
ATR0684G033 Amborella trichopoda
Atru.chr9.1222 Acer truncatum
AUR62007158 Chenopodium quinoa
AUR62018853 Chenopodium quinoa
BcaB04g18429 Brassica carinata
BcaB07g30790 Brassica carinata
BcaC03g16945 Brassica carinata
BcaC04g21643 Brassica carinata
BcaC06g31413 Brassica carinata
BcaC06g34283 Brassica carinata
BcaC07g38089 Brassica carinata
BcaC09g51629 Brassica carinata
BcaNung00078 Brassica carinata
BolC1t01089H Brassica oleracea
BolC2t10882H Brassica oleracea
BolC7t43624H Brassica oleracea
BolC8t48503H Brassica oleracea
BolC9t55810H Brassica oleracea
BraA01t00908Z Brassica rapa
BraA02t08101Z Brassica rapa
BraA06t27396Z Brassica rapa
BraA09t37890Z Brassica rapa
C01p11230 Brassica napus
C02p48500 Brassica napus
C07p30830 Brassica napus
C09p29460 Brassica napus
CAN.G1352.26 Capsicum annuum
CAN.G1352.27 Capsicum annuum
CAN.G1352.28 Capsicum annuum
CAN.G1352.30 Capsicum annuum
CAN.G322.17 Capsicum annuum
CAN.G322.20 Capsicum annuum
CAN.G322.21 Capsicum annuum
CAN.G322.22 Capsicum annuum
CAN.G58.33 Capsicum annuum
CAN.G62.1 Capsicum annuum
CAN.G761.15 Capsicum annuum
CAN.G845.19 Capsicum annuum
CANSAT21G2603 Cannabis sativa
CARHR174260 Cardamine hirsuta
CARHR224280 Cardamine hirsuta
Carub.0007s2382 Capsella rubella
Carub.0008s0062 Capsella rubella
Ca_17816_v3 Cicer arietinum L.
Ca_22008_v3 Cicer arietinum L.
Ca_24609_v3 Cicer arietinum L.
CBR_g37305 Chara braunii
Cc02_g32450 Coffea canephora
Cc08_g11450 Coffea canephora
CDE02G4429 Ceratophyllum demersum
CDE04G2149 Ceratophyllum demersum
CDE11G0264 Ceratophyllum demersum
CDE11G0587 Ceratophyllum demersum
CDE12G0580 Ceratophyllum demersum
Cfa012673 Carpinus fangiana
Ciclev10019614m.g Citrus clementina
CiPaw.11G069800 Carya illinoinensis
CiPaw.12G039900 Carya illinoinensis
CiPaw.12G047100 Carya illinoinensis
ClCG09G012760 Citrullus lanatus
ClCG10G002300 Citrullus lanatus
COL.COLO4_07506 Corchorus olitorius
COL.COLO4_17890 Corchorus olitorius
Cpa.g.sc2.17 Carica papaya
Cpa.g.sc2.20 Carica papaya
Cpa.g.sc74.95 Carica papaya
Cre05.g242600 Chlamydomonas reinhardtii
Cre08.g378800 Chlamydomonas reinhardtii
CsaV3_3G002340 Cucumis sativus L.
CsaV3_3G049820 Cucumis sativus L.
CSS0048311 Camellia sinensis var. sinensis
DCAR_000653 Daucus carota
DCAR_001816 Daucus carota
DCAR_004591 Daucus carota
DCAR_008333 Daucus carota
DCAR_021106 Daucus carota
Dinv21694 Davidia involucrata
Dinv28868 Davidia involucrata
Duzib068G1217 Durio zibethinus
Duzib084G1101 Durio zibethinus
Duzib132G0107 Durio zibethinus
Duzib205G0097 Durio zibethinus
ECA233G2243 Erigeron canadensis
ECA240G3449 Erigeron canadensis
EL10Ac5g12284 Beta vulgaris
Eucgr.D02129 Eucalyptus grandis
Eucgr.E00364 Eucalyptus grandis
FAN04G2745 Fragaria x ananassa
FAN08G2316 Fragaria x ananassa
FAN13G1090 Fragaria x ananassa
FAN18G3087 Fragaria x ananassa
FvH4_5g20240 Fragaria vesca
Glyma.01G205100 Glycine max
Glyma.05G064800 Glycine max
Glyma.05G170000 Glycine max
Glyma.05G170100 Glycine max
Glyma.08G184500 Glycine max
Glyma.08G344500 Glycine max
Glyma.09G076800 Glycine max
Glyma.11G037900 Glycine max
Glyma.17G146600 Glycine max
Gohir.A01G177450 Gossypium hirsutum
Gohir.A03G004700 Gossypium hirsutum
Gohir.A08G165200 Gossypium hirsutum
Gohir.A09G197000 Gossypium hirsutum
Gohir.A12G213500 Gossypium hirsutum
Gohir.D01G168350 Gossypium hirsutum
Gohir.D03G167800 Gossypium hirsutum
Gohir.D08G183900 Gossypium hirsutum
Gohir.D09G191600 Gossypium hirsutum
Gohir.D12G216100 Gossypium hirsutum
Gorai.002G208900 Gossypium raimondii
Gorai.003G177500 Gossypium raimondii
Gorai.004G193200 Gossypium raimondii
Gorai.006G214400 Gossypium raimondii
Gorai.008G231500 Gossypium raimondii
GSVIVG01005717001 Vitis vinifera
GSVIVG01013319001 Vitis vinifera
HanXRQChr03g0089801 Helianthus annuus
HanXRQChr13g0418221 Helianthus annuus
HanXRQChr16g0505151 Helianthus annuus
HanXRQChr16g0505161 Helianthus annuus
HanXRQChr17g0564091 Helianthus annuus
Haze_07973 Corylus avellana
Hma1.2p1_0840F.1_g226580 Hydrangea macrophylla
Hma1.2p1_1008F.1_g247190 Hydrangea macrophylla
HPP92_014875 Vanilla planifolia
HPP92_020681 Vanilla planifolia
HPP92_025670 Vanilla planifolia
Hund11321 Selenicereus undatus
Hund11322 Selenicereus undatus
Lalb_Chr05g0220951 Lupinus albus
Lalb_Chr09g0324191 Lupinus albus
Lalb_Chr09g0329841 Lupinus albus
Lalb_Chr12g0204391 Lupinus albus
Lalb_Chr16g0379361 Lupinus albus
Lalb_Chr16g0386461 Lupinus albus
Lj2A228T49 Lonicera japonica
Lj2g0009709 Lotus japonicus
Lj4g0023853 Lotus japonicus
Lj8C276G2 Lonicera japonica
Lsat_1_v5_gn_6_95060 Lactuca sativa
Lsat_1_v5_gn_7_77900 Lactuca sativa
Lsat_1_v5_gn_7_77920 Lactuca sativa
Manes.01G087500 Manihot esculenta
Manes.02G044400 Manihot esculenta
Manes.07G076400 Manihot esculenta
Manes.10G131606 Manihot esculenta
Mapoly0095s0046 Marchantia polymorpha
MBI03_g28293_MAGBIO Magnolia biondii
MBI04_g13843_MAGBIO Magnolia biondii
MBI06_g01054_MAGBIO Magnolia biondii
MBI09_g12447_MAGBIO Magnolia biondii
MCO07G280 Micromonas commoda
MD04G1052000 Malus domestica
MD06G1048100 Malus domestica
Medtr1g045040 Medicago truncatula
Medtr1g075130 Medicago truncatula
Medtr1g089830 Medicago truncatula
Medtr4g099410 Medicago truncatula
Medtr5g013370 Medicago truncatula
Medtr8g039350 Medicago truncatula
MELO3C003335.2 Cucumis melo
MELO3C013904.2 Cucumis melo
Migut.E00830 Erythranthe guttata
Migut.E00831 Erythranthe guttata
MSTRG.13774 Avicennia marina
MSTRG.1949 Avicennia marina
Nitab4.5_0000185g0140 Nicotiana tabacum
Nitab4.5_0000500g0170 Nicotiana tabacum
Nitab4.5_0000506g0090 Nicotiana tabacum
Nitab4.5_0003456g0050 Nicotiana tabacum
Nitab4.5_0006594g0030 Nicotiana tabacum
Nitab4.5_0012140g0010 Nicotiana tabacum
Nn1g00790 Nelumbo nucifera
Nn6g33786 Nelumbo nucifera
Oeu017208.1 Olea europaea
Oeu019174.1 Olea europaea
Oeu032807.1 Olea europaea
Oeu037376.2 Olea europaea
Oeu054280.1 Olea europaea
Os04g0544500 Oryza sativa ssp. japonica
Peaxi162Scf00102g00835 Petunia axillaris
Peaxi162Scf00190g00087 Petunia axillaris
Peaxi162Scf00301g00012 Petunia axillaris
PGR031G1462 Punica granatum
PGR042G3998 Punica granatum
PGR142G1703 Punica granatum
PGSC0003DMG400020491 Solanum tuberosum
PGSC0003DMG400023780 Solanum tuberosum
PGSC0003DMG400023781 Solanum tuberosum
PGSC0003DMG400026248 Solanum tuberosum
PGSC0003DMG400026578 Solanum tuberosum
PGSC0003DMG400044001 Solanum tuberosum
PGSC0003DMG400045410 Solanum tuberosum
PGSC0003DMG403025785 Solanum tuberosum
Phvul.002G001500 Phaseolus vulgaris
Phvul.002G250800 Phaseolus vulgaris
Phvul.003G224500 Phaseolus vulgaris
Phvul.006G212400 Phaseolus vulgaris
Potri.001G151700 Populus trichocarpa
Potri.003G082800 Populus trichocarpa
Pp3c20_8930 Physcomitrium patens
Pp3c24_13550 Physcomitrium patens
Pp3c8_19750 Physcomitrium patens
Prupe.1G562400 Prunus persica
Prupe.5G058300 Prunus persica
Psat1g137560 Pisum sativum
Psat2g175960 Pisum sativum
Psat4g075280 Pisum sativum
PSO063G0052 Papaver somniferum
PSO782G0293 Papaver somniferum
QL02p098595 Quercus lobata
QL12p008978 Quercus lobata
RcHm_v2.0_Chr7g0205311 Rosa chinensis
Rhsim07G0119000 Rhododendron simsii
Rhsim11G0131300 Rhododendron simsii
Sabra01G0121400 Salix brachista
Sabra03G0053500 Salix brachista
SalBow6G0412 Salvia bowleyana
Sc07g0009090 Simmondsia chinensis
Sc22g0001120 Simmondsia chinensis
Sed0013985 Sechium edule
Sed0014832 Sechium edule
Sed0020770 Sechium edule
Sed0026046 Sechium edule
Sed0027742 Sechium edule
SEGI_21406 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09252 Striga asiatica
SGA_v2.0_scaffold6G03163 Striga asiatica
Solyc01g108416.1 Solanum lycopersicum
Solyc01g108418.1 Solanum lycopersicum
Solyc01g150157.1 Solanum lycopersicum
Solyc01g150161.1 Solanum lycopersicum
Solyc06g060940.2 Solanum lycopersicum
Solyc08g007190.3 Solanum lycopersicum
Solyc08g077960.3 Solanum lycopersicum
Sopen01g046870 Solanum pennellii
Sopen01g046890 Solanum pennellii
Sopen01g046900 Solanum pennellii
Sopen01g050250 Solanum pennellii
Sopen01g050260 Solanum pennellii
Sopen01g050640 Solanum pennellii
Sopen06g021080 Solanum pennellii
Sopen08g003140 Solanum pennellii
Sopen08g026470 Solanum pennellii
Sp2g11950 Schrenkiella parvula
Sp7g16590 Schrenkiella parvula
TAR374G0961 Trochodendron aralioides
TAR375G0444 Trochodendron aralioides
TAR376G0154 Trochodendron aralioides
TAR628G1166 Trochodendron aralioides
TAR629G2721 Trochodendron aralioides
TAR636G0697 Trochodendron aralioides
TAR636G2938 Trochodendron aralioides
THA.LOC104798355 Tarenaya hassleriana
THA.LOC104812815 Tarenaya hassleriana
Thecc.02G040700 Theobroma cacao
Thecc.03G242400 Theobroma cacao
Thhalv10000871m.g Eutrema salsugineum
Thhalv10024940m.g Eutrema salsugineum
TPR.G15153 Trifolium pratense
TPR.G25765 Trifolium pratense
TPR.G31423 Trifolium pratense
TPR.G6184 Trifolium pratense
TWI15G0045 Tripterygium wilfordii
TWI60G0483 Tripterygium wilfordii
TWI81G0758 Tripterygium wilfordii
unitig_0.g1049 Utricularia gibba
unitig_61.g26177 Utricularia gibba
unitig_61.g26178 Utricularia gibba
vmacro00049 Vaccinium macrocarpon
vmacro01774 Vaccinium macrocarpon
vmacro14125 Vaccinium macrocarpon
vmacro23131 Vaccinium macrocarpon
VMungo0251G2977 Vigna mungo
VMungo0540G1232 Vigna mungo
VMungo1215G0550 Vigna mungo
Zm00001eb075150 Zea mays
Zm00001eb427850 Zea mays

User provided reference genes

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