Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p19060 Brassica napus
A06p14580 Brassica napus
A07p39930 Brassica napus
A08p30360 Brassica napus
A09p59900 Brassica napus
Aa31LG4G4370 Aethionema arabicum
Aa31LG7G3230 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1270 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.587 Anthoceros agrestis
Actinidia22406 Actinidia chinensis
Actinidia33680 Actinidia chinensis
Ah.04g152240 Amaranthus hybridus
Ah.13g076100 Amaranthus hybridus
AL1G30980 Arabidopsis lyrata
AL2G33940 Arabidopsis lyrata
AL2G33960 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.1Y8741 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.59W7TL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q7MJNS Arachis hypogaea
AT1G18540 Arabidopsis thaliana
AT1G74050 Arabidopsis thaliana
AT1G74060 Arabidopsis thaliana
ATR0605G236 Amborella trichopoda
Atru.chr1.1967 Acer truncatum
Atru.chr10.2269 Acer truncatum
Atru.chr11.2664 Acer truncatum
Atru.chr6.1987 Acer truncatum
AUR62009225 Chenopodium quinoa
AUR62009367 Chenopodium quinoa
AUR62012075 Chenopodium quinoa
AUR62012080 Chenopodium quinoa
AUR62023048 Chenopodium quinoa
AUR62024337 Chenopodium quinoa
AUR62040224 Chenopodium quinoa
BcaB03g12987 Brassica carinata
BcaB05g24823 Brassica carinata
BcaB05g24824 Brassica carinata
BcaB07g31871 Brassica carinata
BcaC03g15477 Brassica carinata
BcaC05g25751 Brassica carinata
BcaC07g38916 Brassica carinata
BcaC07g38917 Brassica carinata
BcaC08g45610 Brassica carinata
BcaC08g46806 Brassica carinata
BcaC08g46835 Brassica carinata
BolC2t09187H Brassica oleracea
BolC5t30382H Brassica oleracea
BolC6t38473H Brassica oleracea
BolC6t39853H Brassica oleracea
BolC8t49495H Brassica oleracea
BolC8t51882H Brassica oleracea
BraA02t06953Z Brassica rapa
BraA06t24585Z Brassica rapa
BraA07t31539Z Brassica rapa
BraA08t34969Z Brassica rapa
BraA09t41361Z Brassica rapa
C02p31560 Brassica napus
C05p16810 Brassica napus
C06p33650 Brassica napus
C06p48160 Brassica napus
C08p18690 Brassica napus
C08p43330 Brassica napus
CAN.G1186.21 Capsicum annuum
CAN.G1424.6 Capsicum annuum
CAN.G1506.5 Capsicum annuum
CAN.G449.13 Capsicum annuum
CANSAT64G2385 Cannabis sativa
CANSAT64G2856 Cannabis sativa
CARHR019160 Cardamine hirsuta
CARHR067200 Cardamine hirsuta
CARHR067220 Cardamine hirsuta
Carub.0001s1817 Capsella rubella
Carub.0002s2085 Capsella rubella
Carub.0004s0448 Capsella rubella
Ca_16894_v3 Cicer arietinum L.
Ca_17693_v3 Cicer arietinum L.
CBR_g20098 Chara braunii
Cc01_g03600 Coffea canephora
Cc10_g09610 Coffea canephora
CDE07G0598 Ceratophyllum demersum
Cfa010726 Carpinus fangiana
Cfa016891 Carpinus fangiana
Cfa021813 Carpinus fangiana
Ciclev10032633m.g Citrus clementina
Ciclev10032636m.g Citrus clementina
CiPaw.13G002200 Carya illinoinensis
ClCG04G000280 Citrullus lanatus
ClCG09G003890 Citrullus lanatus
ClCG10G012570 Citrullus lanatus
COL.COLO4_07411 Corchorus olitorius
COL.COLO4_22582 Corchorus olitorius
COL.COLO4_36122 Corchorus olitorius
COL.COLO4_36527 Corchorus olitorius
Cpa.g.sc1296.2 Carica papaya
Cpa.g.sc85.94 Carica papaya
Cre01.g011000 Chlamydomonas reinhardtii
CsaV3_3G032360 Cucumis sativus L.
CsaV3_4G010580 Cucumis sativus L.
CsaV3_7G031330 Cucumis sativus L.
CSS0003552 Camellia sinensis var. sinensis
CSS0013847 Camellia sinensis var. sinensis
CSS0035029 Camellia sinensis var. sinensis
DCAR_013561 Daucus carota
DCAR_019794 Daucus carota
DCAR_019834 Daucus carota
Dinv14265 Davidia involucrata
Dinv43473 Davidia involucrata
Dinv43907 Davidia involucrata
Duzib093G0505 Durio zibethinus
Duzib093G1904 Durio zibethinus
Duzib106G0953 Durio zibethinus
Duzib106G1020 Durio zibethinus
Duzib128G0882 Durio zibethinus
ECA233G4111 Erigeron canadensis
ECA234G3507 Erigeron canadensis
ECA248G0243 Erigeron canadensis
EL10Ac3g06957 Beta vulgaris
EL10Ac6g14005 Beta vulgaris
Eucgr.G03401 Eucalyptus grandis
FAN01G0682 Fragaria x ananassa
FAN01G0706 Fragaria x ananassa
FAN03G3299 Fragaria x ananassa
FAN05G2173 Fragaria x ananassa
FAN06G3933 Fragaria x ananassa
FAN09G1007 Fragaria x ananassa
FAN10G0804 Fragaria x ananassa
FAN14G3939 Fragaria x ananassa
FvH4_6g17061 Fragaria vesca
FvH4_6g22770 Fragaria vesca
FvH4_7g00540 Fragaria vesca
Glyma.05G184000 Glycine max
Glyma.05G184100 Glycine max
Glyma.08G141700 Glycine max
Glyma.08G141800 Glycine max
Glyma.08G151900 Glycine max
Glyma.15G271300 Glycine max
Gohir.A01G137669 Gossypium hirsutum
Gohir.A01G194700 Gossypium hirsutum
Gohir.A04G056726 Gossypium hirsutum
Gohir.A11G314000 Gossypium hirsutum
Gohir.D01G126400 Gossypium hirsutum
Gohir.D01G184900 Gossypium hirsutum
Gohir.D03G083600 Gossypium hirsutum
Gohir.D04G090000 Gossypium hirsutum
Gohir.D08G158701 Gossypium hirsutum
Gohir.D11G331200 Gossypium hirsutum
Gorai.002G156900 Gossypium raimondii
Gorai.002G228400 Gossypium raimondii
Gorai.007G361900 Gossypium raimondii
Gorai.012G100600 Gossypium raimondii
Gorai.012G104600 Gossypium raimondii
GSVIVG01032041001 Vitis vinifera
GSVIVG01033532001 Vitis vinifera
HanXRQChr01g0018611 Helianthus annuus
HanXRQChr10g0305091 Helianthus annuus
HanXRQChr11g0330521 Helianthus annuus
HanXRQChr16g0519641 Helianthus annuus
HanXRQChr17g0563451 Helianthus annuus
HanXRQChr17g0563471 Helianthus annuus
Haze_03247 Corylus avellana
Haze_19945 Corylus avellana
Haze_26377 Corylus avellana
Hma1.2p1_1745F.1_g300260 Hydrangea macrophylla
Hma1.2p1_3271F.1_g334780 Hydrangea macrophylla
HPP92_018949 Vanilla planifolia
Hund19740 Selenicereus undatus
Hund22164 Selenicereus undatus
Lalb_Chr08g0238851 Lupinus albus
Lalb_Chr20g0108141 Lupinus albus
Lalb_Chr23g0272351 Lupinus albus
Lalb_Chr23g0272381 Lupinus albus
Lj1g0023020 Lotus japonicus
Lj3g0007244 Lotus japonicus
Lj4g0016096 Lotus japonicus
Lj6A561T56 Lonicera japonica
Lj7A567T26 Lonicera japonica
Lj9C491G16 Lonicera japonica
Lsat_1_v5_gn_4_46261 Lactuca sativa
Lsat_1_v5_gn_5_67280 Lactuca sativa
Lsat_1_v5_gn_5_67841 Lactuca sativa
Manes.07G002700 Manihot esculenta
Manes.07G002900 Manihot esculenta
Manes.10G148100 Manihot esculenta
Mapoly0037s0030 Marchantia polymorpha
MBI01_g15747_MAGBIO Magnolia biondii
MBI04_g14272_MAGBIO Magnolia biondii
MCO15G218 Micromonas commoda
MD02G1071700 Malus domestica
MD02G1311200 Malus domestica
MD02G1316700 Malus domestica
MD07G1005300 Malus domestica
MD08G1183300 Malus domestica
MD10G1116300 Malus domestica
MD12G1062000 Malus domestica
MD14G1062400 Malus domestica
MD15G1201600 Malus domestica
Medtr3g094570 Medicago truncatula
Medtr3g094860 Medicago truncatula
Medtr5g098090 Medicago truncatula
Medtr8g091910 Medicago truncatula
MELO3C023168.2 Cucumis melo
MELO3C023525.2 Cucumis melo
MELO3C023953.2 Cucumis melo
Migut.C01320 Erythranthe guttata
Migut.N03371 Erythranthe guttata
MSTRG.1567 Avicennia marina
MSTRG.22469 Avicennia marina
Nitab4.5_0000143g0390 Nicotiana tabacum
Nitab4.5_0000264g0160 Nicotiana tabacum
Nitab4.5_0001109g0040 Nicotiana tabacum
Nitab4.5_0001198g0120 Nicotiana tabacum
Nitab4.5_0001735g0020 Nicotiana tabacum
Nitab4.5_0003505g0020 Nicotiana tabacum
Nitab4.5_0003785g0020 Nicotiana tabacum
Nitab4.5_0013359g0030 Nicotiana tabacum
Nn6g34553 Nelumbo nucifera
Nn7g36066 Nelumbo nucifera
Oeu017745.1 Olea europaea
Oeu017746.1 Olea europaea
Oeu037490.1 Olea europaea
Oeu044958.1 Olea europaea
Oeu056303.1 Olea europaea
Oeu058313.1 Olea europaea
Os02g0591700 Oryza sativa ssp. japonica
Os04g0473400 Oryza sativa ssp. japonica
Peaxi162Scf00442g00415 Petunia axillaris
Peaxi162Scf00558g00033 Petunia axillaris
PGR044G1197 Punica granatum
PGR142G1734 Punica granatum
PGSC0003DMG400008445 Solanum tuberosum
PGSC0003DMG400013270 Solanum tuberosum
PGSC0003DMG400018882 Solanum tuberosum
PGSC0003DMG400023609 Solanum tuberosum
Phvul.002G265000 Phaseolus vulgaris
Phvul.003G025200 Phaseolus vulgaris
Phvul.005G038900 Phaseolus vulgaris
Potri.001G271500 Populus trichocarpa
Potri.009G065800 Populus trichocarpa
Pp3c14_4100 Physcomitrium patens
Pp3c14_4160 Physcomitrium patens
Pp3c1_24300 Physcomitrium patens
Pp3c2_13300 Physcomitrium patens
Prupe.2G007500 Prunus persica
Prupe.3G002200 Prunus persica
Prupe.6G171700 Prunus persica
Prupe.7G072900 Prunus persica
Psat5g066400 Pisum sativum
Psat7g051120 Pisum sativum
PSO017G0631 Papaver somniferum
PSO170G4577 Papaver somniferum
PSO339G1738 Papaver somniferum
PSO384G0299 Papaver somniferum
PSO541G1386 Papaver somniferum
QL04p004765 Quercus lobata
QL07p022773 Quercus lobata
QL93p2022_0222 Quercus lobata
RcHm_v2.0_Chr1g0314331 Rosa chinensis
RcHm_v2.0_Chr1g0345461 Rosa chinensis
RcHm_v2.0_Chr2g0159091 Rosa chinensis
RcHm_v2.0_Chr3g0480371 Rosa chinensis
RcHm_v2.0_Chr3g0488461 Rosa chinensis
RcHm_v2.0_Chr4g0387091 Rosa chinensis
RcHm_v2.0_Chr5g0070501 Rosa chinensis
RcHm_v2.0_Chr7g0223531 Rosa chinensis
Rhsim09G0146200 Rhododendron simsii
Rhsim13G0131000 Rhododendron simsii
Sabra06G0042000 Salix brachista
Sabra09G0048900 Salix brachista
SalBow1G0482 Salvia bowleyana
SalBow3G2550 Salvia bowleyana
SalBow5G3518 Salvia bowleyana
SalBow6G0544 Salvia bowleyana
SalBow6G5666 Salvia bowleyana
Sc11g0009370 Simmondsia chinensis
Sc16g0008200 Simmondsia chinensis
Sed0004210 Sechium edule
Sed0015152 Sechium edule
Sed0015940 Sechium edule
Sed0018201 Sechium edule
SEGI_24695 Sequoiadendron giganteum
SEGI_27616 Sequoiadendron giganteum
SEGI_34290 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32563 Striga asiatica
SGA_v2.0_scaffold19G08938 Striga asiatica
SGA_v2.0_scaffold24G10607 Striga asiatica
SMO340G0076 Selaginella moellendorffii
Solyc04g014720.4 Solanum lycopersicum
Solyc05g054070.4 Solanum lycopersicum
Solyc11g012110.2 Solanum lycopersicum
Sopen04g006830 Solanum pennellii
Sopen05g032560 Solanum pennellii
Sopen11g006900 Solanum pennellii
Sp1g16490 Schrenkiella parvula
Sp5g29290 Schrenkiella parvula
Sp6g12740 Schrenkiella parvula
SpUn0834_0010 Schrenkiella parvula
TAR369G0703 Trochodendron aralioides
TAR623G0097 Trochodendron aralioides
TAR633G2139 Trochodendron aralioides
TAR636G0747 Trochodendron aralioides
THA.LOC104819057 Tarenaya hassleriana
THA.LOC104826663 Tarenaya hassleriana
Thecc.05G167500 Theobroma cacao
Thecc.05G167600 Theobroma cacao
Thecc.05G172300 Theobroma cacao
Thhalv10008650m.g Eutrema salsugineum
Thhalv10019079m.g Eutrema salsugineum
Thhalv10019083m.g Eutrema salsugineum
TPR.G16196 Trifolium pratense
TPR.G17422 Trifolium pratense
TPR.G2185 Trifolium pratense
TPR.G23730 Trifolium pratense
TPR.G27911 Trifolium pratense
TPR.G5853 Trifolium pratense
TWI09G0912 Tripterygium wilfordii
TWI53G1366 Tripterygium wilfordii
TWI73G0667 Tripterygium wilfordii
unitig_46.g17994 Utricularia gibba
VMungo0752G0001 Vigna mungo
VMungo1080G0116 Vigna mungo
Zm00001eb112100 Zea mays
Zm00001eb138180 Zea mays
Zm00001eb170250 Zea mays
Zm00001eb183410 Zea mays
Zm00001eb183420 Zea mays
Zm00001eb245740 Zea mays
Zm00001eb424070 Zea mays
Zm00001eb424800 Zea mays

User provided reference genes

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