Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p34390 Brassica napus
A05p28630 Brassica napus
A09p26590 Brassica napus
Aa31LG8G7100 Aethionema arabicum
Aa31LG9G14000 Aethionema arabicum
Aa31LG9G9980 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.147 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2482 Anthoceros agrestis
Actinidia05064 Actinidia chinensis
Actinidia10749 Actinidia chinensis
Actinidia25181 Actinidia chinensis
Actinidia32279 Actinidia chinensis
Actinidia32280 Actinidia chinensis
Actinidia35368 Actinidia chinensis
Actinidia39264 Actinidia chinensis
Ah.04g166140 Amaranthus hybridus
Ah.06g182290 Amaranthus hybridus
Ah.09g234370 Amaranthus hybridus
AL3G34010 Arabidopsis lyrata
AL6G47690 Arabidopsis lyrata
Aqoxy1G04160 Aquilegia oxysepala
Aqoxy263s001 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5EE15R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.94CX12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G4XPAU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HX9V9Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I5983D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LI7WVR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QR5N80 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.US5JJQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X0YJ10 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XEI7Y7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YPW5N8 Arachis hypogaea
AT3G20290 Arabidopsis thaliana
AT4G05520 Arabidopsis thaliana
ATR1128G033 Amborella trichopoda
Atru.chr1.2495 Acer truncatum
AUR62012773 Chenopodium quinoa
AUR62015877 Chenopodium quinoa
AUR62020346 Chenopodium quinoa
AUR62021885 Chenopodium quinoa
BcaB01g01774 Brassica carinata
BcaB04g20662 Brassica carinata
BcaC04g21262 Brassica carinata
BcaC05g29769 Brassica carinata
BcaC09g48978 Brassica carinata
BolC1t04339H Brassica oleracea
BolC5t33126H Brassica oleracea
BolC9t56205H Brassica oleracea
BraA01t03536Z Brassica rapa
BraA05t21739Z Brassica rapa
BraA09t38232Z Brassica rapa
C01p43830 Brassica napus
C05p44030 Brassica napus
C09p33710 Brassica napus
CAN.G1186.13 Capsicum annuum
CAN.G1507.1 Capsicum annuum
CAN.G337.63 Capsicum annuum
CAN.G492.24 Capsicum annuum
CANSAT11G1024 Cannabis sativa
CANSAT56G3118 Cannabis sativa
CARHR095930 Cardamine hirsuta
CARHR095940 Cardamine hirsuta
CARHR253460 Cardamine hirsuta
Carub.0003s2024 Capsella rubella
Carub.0006s3200 Capsella rubella
Ca_00709_v3 Cicer arietinum L.
Ca_06345_v3 Cicer arietinum L.
Ca_14764_v3 Cicer arietinum L.
Ca_21054_v3 Cicer arietinum L.
CBR_g8616 Chara braunii
Cc04_g03910 Coffea canephora
Cc05_g14240 Coffea canephora
Cc05_g14260 Coffea canephora
Cc05_g14270 Coffea canephora
Cc09_g01040 Coffea canephora
CDE04G0734 Ceratophyllum demersum
CDE07G1552 Ceratophyllum demersum
Ciclev10007883m.g Citrus clementina
Ciclev10014814m.g Citrus clementina
CiPaw.09G100700 Carya illinoinensis
CiPaw.11G194300 Carya illinoinensis
ClCG01G009930 Citrullus lanatus
ClCG10G005140 Citrullus lanatus
COL.COLO4_09718 Corchorus olitorius
COL.COLO4_31855 Corchorus olitorius
Cpa.g.sc284.11 Carica papaya
Cpa.g.sc513.5 Carica papaya
Cre06.g260950 Chlamydomonas reinhardtii
CsaV3_1G007110 Cucumis sativus L.
CsaV3_1G045850 Cucumis sativus L.
CsaV3_3G004820 Cucumis sativus L.
CSS0004884 Camellia sinensis var. sinensis
CSS0016863 Camellia sinensis var. sinensis
CSS0017366 Camellia sinensis var. sinensis
CSS0018440 Camellia sinensis var. sinensis
CSS0023722 Camellia sinensis var. sinensis
CSS0027675 Camellia sinensis var. sinensis
CSS0050431 Camellia sinensis var. sinensis
DCAR_002210 Daucus carota
DCAR_017109 Daucus carota
Dinv13954 Davidia involucrata
Dinv40792 Davidia involucrata
Duzib192G0299 Durio zibethinus
Duzib235G1241 Durio zibethinus
Duzib268G0837 Durio zibethinus
ECA100G0010 Erigeron canadensis
ECA236G1779 Erigeron canadensis
ECA240G1892 Erigeron canadensis
EL10Ac4g07696 Beta vulgaris
EL10Ac4g07704 Beta vulgaris
EL10Ac8g20157 Beta vulgaris
Eucgr.D01381 Eucalyptus grandis
Eucgr.D01382 Eucalyptus grandis
Eucgr.F03500 Eucalyptus grandis
Eucgr.L02979 Eucalyptus grandis
FAN11G3816 Fragaria x ananassa
FAN21G0533 Fragaria x ananassa
FAN21G3001 Fragaria x ananassa
FAN21G3162 Fragaria x ananassa
FAN25G1311 Fragaria x ananassa
FAN25G2294 Fragaria x ananassa
FAN25G3680 Fragaria x ananassa
FvH4_3g01170 Fragaria vesca
FvH4_3g23480 Fragaria vesca
FvH4_3g23610 Fragaria vesca
Glyma.02G294200 Glycine max
Glyma.07G264600 Glycine max
Glyma.08G278600 Glycine max
Glyma.09G008800 Glycine max
Glyma.15G113200 Glycine max
Glyma.17G009500 Glycine max
Glyma.18G090600 Glycine max
Gohir.A01G084000 Gossypium hirsutum
Gohir.A10G010300 Gossypium hirsutum
Gohir.A11G278200 Gossypium hirsutum
Gohir.D01G070400 Gossypium hirsutum
Gohir.D02G161740 Gossypium hirsutum
Gohir.D10G010000 Gossypium hirsutum
Gohir.D11G226400 Gossypium hirsutum
Gohir.D11G288300 Gossypium hirsutum
Gorai.002G093200 Gossypium raimondii
Gorai.007G312100 Gossypium raimondii
Gorai.011G010900 Gossypium raimondii
GSVIVG01007243001 Vitis vinifera
GSVIVG01037715001 Vitis vinifera
HanXRQChr02g0040471 Helianthus annuus
HanXRQChr03g0076801 Helianthus annuus
HanXRQChr11g0334331 Helianthus annuus
HanXRQChr15g0470851 Helianthus annuus
HanXRQChr16g0529951 Helianthus annuus
Haze_06895 Corylus avellana
Haze_09738 Corylus avellana
Haze_27037 Corylus avellana
Hma1.2p1_0660F.1_g197510 Hydrangea macrophylla
Hma1.2p1_1332F.1_g276110 Hydrangea macrophylla
HPP92_003053 Vanilla planifolia
HPP92_018307 Vanilla planifolia
HPP92_026419 Vanilla planifolia
HPP92_026420 Vanilla planifolia
HPP92_027896 Vanilla planifolia
Hund01963 Selenicereus undatus
Hund21159 Selenicereus undatus
Hund23201 Selenicereus undatus
Hund23414 Selenicereus undatus
Lalb_Chr04g0248191 Lupinus albus
Lalb_Chr07g0177041 Lupinus albus
Lalb_Chr10g0107141 Lupinus albus
Lalb_Chr15g0081641 Lupinus albus
Lalb_Chr15g0081651 Lupinus albus
Lalb_Chr17g0348701 Lupinus albus
Lalb_Chr18g0056861 Lupinus albus
Lj1C1238G4 Lonicera japonica
Lj1C880T5 Lonicera japonica
Lj4g0017128 Lotus japonicus
Lj4g0018115 Lotus japonicus
Lj6g0000163 Lotus japonicus
Lj6g0000714 Lotus japonicus
Lj8C173G6 Lonicera japonica
LjContig00272g0024463 Lotus japonicus
Lsat_1_v5_gn_0_39480 Lactuca sativa
Lsat_1_v5_gn_3_130281 Lactuca sativa
Lsat_1_v5_gn_4_29921 Lactuca sativa
Lsat_1_v5_gn_7_114561 Lactuca sativa
Lsat_1_v5_gn_7_14621 Lactuca sativa
Lsat_1_v5_gn_9_93260 Lactuca sativa
Manes.03G136906 Manihot esculenta
Manes.11G000200 Manihot esculenta
Manes.15G066500 Manihot esculenta
Mapoly0054s0094 Marchantia polymorpha
MBI16_g26172_MAGBIO Magnolia biondii
MBI19_g29454_MAGBIO Magnolia biondii
MCO11G276 Micromonas commoda
MD03G1194000 Malus domestica
MD03G1203500 Malus domestica
MD03G1203700 Malus domestica
MD05G1354400 Malus domestica
MD05G1354500 Malus domestica
MD05G1355000 Malus domestica
MD10G1329000 Malus domestica
MD11G1210300 Malus domestica
Medtr2g025180 Medicago truncatula
Medtr3g054130 Medicago truncatula
Medtr3g054210 Medicago truncatula
Medtr4g132840 Medicago truncatula
Medtr5g093720 Medicago truncatula
MELO3C014180.2 Cucumis melo
MELO3C021705.2 Cucumis melo
Migut.H01794 Erythranthe guttata
Migut.M01347 Erythranthe guttata
Migut.M01715 Erythranthe guttata
Migut.M01717 Erythranthe guttata
MSTRG.6956 Avicennia marina
MSTRG.7191 Avicennia marina
Nitab4.5_0000143g0490 Nicotiana tabacum
Nitab4.5_0000168g0070 Nicotiana tabacum
Nitab4.5_0000984g0060 Nicotiana tabacum
Nitab4.5_0001198g0270 Nicotiana tabacum
Nitab4.5_0002826g0050 Nicotiana tabacum
Nitab4.5_0004445g0100 Nicotiana tabacum
Nitab4.5_0005078g0030 Nicotiana tabacum
Nitab4.5_0006743g0020 Nicotiana tabacum
Nitab4.5_0016112g0010 Nicotiana tabacum
Nn1g03353 Nelumbo nucifera
Nn1g07325 Nelumbo nucifera
Oeu003168.1 Olea europaea
Oeu005992.1 Olea europaea
Oeu007359.1 Olea europaea
Oeu007998.4 Olea europaea
Oeu026382.1 Olea europaea
Oeu043635.1 Olea europaea
Os02g0158100 Oryza sativa ssp. japonica
Os04g0669300 Oryza sativa ssp. japonica
Os06g0687800 Oryza sativa ssp. japonica
Peaxi162Scf00235g00626 Petunia axillaris
Peaxi162Scf00339g01013 Petunia axillaris
Peaxi162Scf00558g00013 Petunia axillaris
Peaxi162Scf00558g00113 Petunia axillaris
Peaxi162Scf00633g00025 Petunia axillaris
PGR004G1073 Punica granatum
PGR004G2851 Punica granatum
PGR031G3577 Punica granatum
PGR093G0003 Punica granatum
PGSC0003DMG400012859 Solanum tuberosum
PGSC0003DMG400013265 Solanum tuberosum
PGSC0003DMG400014414 Solanum tuberosum
PGSC0003DMG400022303 Solanum tuberosum
Phvul.003G082600 Phaseolus vulgaris
Phvul.006G144500 Phaseolus vulgaris
Phvul.007G262900 Phaseolus vulgaris
Phvul.007G263100 Phaseolus vulgaris
Phvul.008G271300 Phaseolus vulgaris
Potri.001G356300 Populus trichocarpa
Potri.011G022300 Populus trichocarpa
Pp3c20_2350 Physcomitrium patens
Pp3c24_13930 Physcomitrium patens
PRCOL_00004064 Prasinoderma coloniale
PRCOL_00004229 Prasinoderma coloniale
PRCOL_00006840 Prasinoderma coloniale
Prupe.4G013000 Prunus persica
Prupe.4G043100 Prunus persica
Prupe.4G222700 Prunus persica
Psat0s4717g0040 Pisum sativum
Psat1g177280 Pisum sativum
Psat2g012800 Pisum sativum
Psat4g003640 Pisum sativum
Psat5g176000 Pisum sativum
PSO210G6039 Papaver somniferum
PSO832G2670 Papaver somniferum
QL01p030492 Quercus lobata
QL03p008322 Quercus lobata
QL05p069950 Quercus lobata
QL08p007360 Quercus lobata
QL08p007387 Quercus lobata
RcHm_v2.0_Chr5g0001731 Rosa chinensis
RcHm_v2.0_Chr5g0041321 Rosa chinensis
Rhsim02G0104600 Rhododendron simsii
Rhsim06G0222800 Rhododendron simsii
RhsimUnG0248000 Rhododendron simsii
Sc03g0008360 Simmondsia chinensis
Sc03g0008370 Simmondsia chinensis
Sc05g0009530 Simmondsia chinensis
Sed0005511 Sechium edule
Sed0017318 Sechium edule
Sed0017570 Sechium edule
SEGI_30913 Sequoiadendron giganteum
SEGI_34487 Sequoiadendron giganteum
SEGI_39093 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05351 Striga asiatica
SGA_v2.0_scaffold168G38507 Striga asiatica
SGA_v2.0_scaffold7G03798 Striga asiatica
SHI26575 Sapria himalayana
SHI26576 Sapria himalayana
SMO116G0065 Selaginella moellendorffii
SMO143G0093 Selaginella moellendorffii
SMO347G0613 Selaginella moellendorffii
Solyc07g064910.3 Solanum lycopersicum
Solyc10g006110.3 Solanum lycopersicum
Solyc11g012020.2 Solanum lycopersicum
Solyc12g014460.2 Solanum lycopersicum
Sopen07g033110 Solanum pennellii
Sopen10g002060 Solanum pennellii
Sopen12g007340 Solanum pennellii
Sp3g18320 Schrenkiella parvula
Sp6g04800 Schrenkiella parvula
TAR627G0789 Trochodendron aralioides
TAR629G2991 Trochodendron aralioides
THA.LOC104812985 Tarenaya hassleriana
THA.LOC104816935 Tarenaya hassleriana
Thecc.06G230900 Theobroma cacao
Thecc.07G029100 Theobroma cacao
Thhalv10020459m.g Eutrema salsugineum
Thhalv10028561m.g Eutrema salsugineum
TPR.G13123 Trifolium pratense
TPR.G18444 Trifolium pratense
TPR.G20592 Trifolium pratense
TPR.G25829 Trifolium pratense
TPR.G25854 Trifolium pratense
TPR.G28187 Trifolium pratense
TPR.G32242 Trifolium pratense
TPR.G35107 Trifolium pratense
TPR.G36158 Trifolium pratense
TPR.G37062 Trifolium pratense
TPR.G958 Trifolium pratense
TWI38G0060 Tripterygium wilfordii
TWI39G0292 Tripterygium wilfordii
unitig_32.g11041 Utricularia gibba
unitig_37.g12837 Utricularia gibba
vmacro09694 Vaccinium macrocarpon
vmacro15786 Vaccinium macrocarpon
vmacro15805 Vaccinium macrocarpon
vmacro22318 Vaccinium macrocarpon
vmacro23324 Vaccinium macrocarpon
VMungo0647G0133 Vigna mungo
VMungo0647G0694 Vigna mungo
VMungo0720G0035 Vigna mungo
VMungo1215G2470 Vigna mungo
Zm00001eb066880 Zea mays
Zm00001eb207790 Zea mays
Zm00001eb225790 Zea mays

User provided reference genes

Program Settings