Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p21680 Brassica napus
A10p05930 Brassica napus
Aa31LG1G6660 Aethionema arabicum
Aa31LG6G12740 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2171 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.3398 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.477 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4435 Anthoceros agrestis
Actinidia17400 Actinidia chinensis
Actinidia22935 Actinidia chinensis
Actinidia23902 Actinidia chinensis
Actinidia25138 Actinidia chinensis
Actinidia28363 Actinidia chinensis
Actinidia34445 Actinidia chinensis
Ah.00g000590 Amaranthus hybridus
Ah.15g100370 Amaranthus hybridus
AL7G15290 Arabidopsis lyrata
Aqoxy1G00718 Aquilegia oxysepala
Aqoxy1G02756 Aquilegia oxysepala
Aqoxy6G01922_Aqoxy6G01930 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.N1Z85G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P2CA5S Arachis hypogaea
AT1G07350 Arabidopsis thaliana
AT4G35785 Arabidopsis thaliana
ATR0618G030 Amborella trichopoda
ATR0661G477 Amborella trichopoda
ATR0680G194 Amborella trichopoda
Atru.chr11.1035 Acer truncatum
Atru.chr3.4063 Acer truncatum
Atru.chr3.913 Acer truncatum
Atru.chr3.918 Acer truncatum
Atru.chr9.2155_Atru.chr9.2156 Acer truncatum
AUR62001700 Chenopodium quinoa
AUR62010713 Chenopodium quinoa
AUR62013860 Chenopodium quinoa
AUR62020082 Chenopodium quinoa
AUR62027254 Chenopodium quinoa
AUR62036732 Chenopodium quinoa
BcaC06g36301 Brassica carinata
BcaNung05727 Brassica carinata
BolC1t00312H Brassica oleracea
BolC3t20347H Brassica oleracea
BolC5t29313H Brassica oleracea
BolC7t40959H Brassica oleracea
BraA01t00275Z Brassica rapa
BraA08t34118Z Brassica rapa
BraA10t42856Z Brassica rapa
C03p80900 Brassica napus
C05p05410 Brassica napus
C07p05600 Brassica napus
CANSAT21G1461 Cannabis sativa
CANSAT25G1558 Cannabis sativa
CANSAT54G0180 Cannabis sativa
CARHR007060 Cardamine hirsuta
CARHR244150 Cardamine hirsuta
Carub.0001s0665 Capsella rubella
Carub.0007s0445 Capsella rubella
Ca_03641_v3 Cicer arietinum L.
Ca_14898_v3 Cicer arietinum L.
Ca_24947_v3 Cicer arietinum L.
CBR_g55300 Chara braunii
CBR_g61511 Chara braunii
Cc01_g13750 Coffea canephora
Cc05_g13660 Coffea canephora
Cc07_g11370 Coffea canephora
Cc08_g14980 Coffea canephora
CDE02G2241 Ceratophyllum demersum
CDE02G4189 Ceratophyllum demersum
CDE04G0440 Ceratophyllum demersum
CDE07G1184 Ceratophyllum demersum
CDE09G0786 Ceratophyllum demersum
Cfa011636 Carpinus fangiana
Cfa012204 Carpinus fangiana
Cfa024844 Carpinus fangiana
Ciclev10021507m.g Citrus clementina
Ciclev10026375m.g Citrus clementina
Ciclev10028652m.g Citrus clementina
CiPaw.08G125600 Carya illinoinensis
CiPaw.11G132600 Carya illinoinensis
CiPaw.12G091300 Carya illinoinensis
CiPaw.13G082600 Carya illinoinensis
ClCG01G020630 Citrullus lanatus
ClCG03G000990 Citrullus lanatus
COL.COLO4_19090 Corchorus olitorius
COL.COLO4_22500 Corchorus olitorius
COL.COLO4_34495 Corchorus olitorius
Cpa.g.c36394 Carica papaya
Cpa.g.sc6.317 Carica papaya
Cre13.g602850 Chlamydomonas reinhardtii
CsaV3_1G035950 Cucumis sativus L.
CsaV3_6G047540 Cucumis sativus L.
CSS0030790 Camellia sinensis var. sinensis
CSS0032627 Camellia sinensis var. sinensis
CSS0032953 Camellia sinensis var. sinensis
CSS0036240 Camellia sinensis var. sinensis
CSS0040921 Camellia sinensis var. sinensis
CSS0042258 Camellia sinensis var. sinensis
CSS0044596 Camellia sinensis var. sinensis
DCAR_007401 Daucus carota
Dinv08546 Davidia involucrata
Dinv14471 Davidia involucrata
Dinv28601 Davidia involucrata
Dinv37620 Davidia involucrata
Dinv38923 Davidia involucrata
Dinv40148 Davidia involucrata
Duzib068G0662 Durio zibethinus
Duzib084G1111 Durio zibethinus
Duzib147G1265 Durio zibethinus
Duzib150G1457 Durio zibethinus
Duzib168G2287 Durio zibethinus
Duzib205G0213 Durio zibethinus
Duzib264G0662 Durio zibethinus
ECA238G3058 Erigeron canadensis
ECA246G2975 Erigeron canadensis
ECA247G3397 Erigeron canadensis
EL10Ac5g12802 Beta vulgaris
EL10Ac7g16110 Beta vulgaris
EL10Ac8g20624 Beta vulgaris
Eucgr.E00636 Eucalyptus grandis
Eucgr.J01947 Eucalyptus grandis
Eucgr.J02495 Eucalyptus grandis
FAN04G1580 Fragaria x ananassa
FAN08G3517 Fragaria x ananassa
FAN11G3835 Fragaria x ananassa
FAN13G2872 Fragaria x ananassa
FAN16G1327 Fragaria x ananassa
FAN18G3005 Fragaria x ananassa
FAN21G3912 Fragaria x ananassa
FAN25G1786 Fragaria x ananassa
FAN25G2956 Fragaria x ananassa
FAN28G2795 Fragaria x ananassa
FvH4_1g10991 Fragaria vesca
FvH4_3g37890 Fragaria vesca
FvH4_5g02820 Fragaria vesca
Glyma.01G162000 Glycine max
Glyma.02G044000 Glycine max
Glyma.08G297800 Glycine max
Glyma.08G334100 Glycine max
Glyma.10G267100 Glycine max
Glyma.16G121300 Glycine max
Glyma.18G067300 Glycine max
Gohir.A02G174750 Gossypium hirsutum
Gohir.A03G048500 Gossypium hirsutum
Gohir.A12G230900 Gossypium hirsutum
Gohir.A13G225300 Gossypium hirsutum
Gohir.D03G005100 Gossypium hirsutum
Gohir.D03G118600 Gossypium hirsutum
Gohir.D12G232000 Gossypium hirsutum
Gohir.D13G230400 Gossypium hirsutum
Gorai.003G005400 Gossypium raimondii
Gorai.003G125000 Gossypium raimondii
Gorai.008G248300 Gossypium raimondii
Gorai.013G261000 Gossypium raimondii
GSVIVG01005197001 Vitis vinifera
GSVIVG01019390001 Vitis vinifera
GSVIVG01024805001 Vitis vinifera
HanXRQChr08g0237101 Helianthus annuus
HanXRQChr14g0442041 Helianthus annuus
Haze_03699 Corylus avellana
Haze_08809 Corylus avellana
Haze_24242 Corylus avellana
Haze_26325 Corylus avellana
Hma1.2p1_0315F.1_g122630 Hydrangea macrophylla
Hma1.2p1_0543F.1_g175240 Hydrangea macrophylla
Hma1.2p1_0561F.1_g179010 Hydrangea macrophylla
Hma1.2p1_2883F.1_g329880 Hydrangea macrophylla
HPP92_015979 Vanilla planifolia
HPP92_022065 Vanilla planifolia
HPP92_022385 Vanilla planifolia
HPP92_025889 Vanilla planifolia
Hund05148 Selenicereus undatus
Hund11452 Selenicereus undatus
Lalb_Chr09g0321411 Lupinus albus
Lalb_Chr16g0377341 Lupinus albus
Lalb_Chr18g0050621 Lupinus albus
Lj1A143T42 Lonicera japonica
Lj2g0005168 Lotus japonicus
Lj6g0027218 Lotus japonicus
Lj8C218G6 Lonicera japonica
Lsat_1_v5_gn_2_75300 Lactuca sativa
Lsat_1_v5_gn_9_25580 Lactuca sativa
Manes.01G060400 Manihot esculenta
Manes.01G151200 Manihot esculenta
Manes.02G110800 Manihot esculenta
Manes.12G085500 Manihot esculenta
Manes.13G076900 Manihot esculenta
Manes.17G004137 Manihot esculenta
Mapoly0004s0118 Marchantia polymorpha
Mapoly0019s0057 Marchantia polymorpha
Mapoly0057s0002 Marchantia polymorpha
Mapoly0187s0004 Marchantia polymorpha
MBI05_g34735_MAGBIO Magnolia biondii
MBI14_g32941_MAGBIO Magnolia biondii
MBI16_g34350_MAGBIO Magnolia biondii
MBI18_g32046_MAGBIO Magnolia biondii
MD02G1123000 Malus domestica
MD03G1200600 Malus domestica
MD06G1087700 Malus domestica
MD11G1082300 Malus domestica
MD11G1082400 Malus domestica
MD14G1108500 Malus domestica
MD15G1237000 Malus domestica
Medtr3g462330 Medicago truncatula
Medtr5g023060 Medicago truncatula
Medtr8g074790 Medicago truncatula
MELO3C007946.2 Cucumis melo
MELO3C020575.2 Cucumis melo
Migut.E01075 Erythranthe guttata
Migut.L00735 Erythranthe guttata
Migut.L00810 Erythranthe guttata
Migut.N00813 Erythranthe guttata
MSTRG.12673 Avicennia marina
MSTRG.15593 Avicennia marina
Nitab4.5_0000188g0260 Nicotiana tabacum
Nitab4.5_0000744g0140 Nicotiana tabacum
Nitab4.5_0001561g0080 Nicotiana tabacum
Nitab4.5_0001685g0020 Nicotiana tabacum
Nitab4.5_0001696g0040 Nicotiana tabacum
Nitab4.5_0005409g0030 Nicotiana tabacum
Nitab4.5_0011134g0010 Nicotiana tabacum
Nitab4.5_0011490g0020 Nicotiana tabacum
Nn1g01585 Nelumbo nucifera
Nn2g11359 Nelumbo nucifera
Nn2g13604 Nelumbo nucifera
Nn5g27152 Nelumbo nucifera
Nn6g31890 Nelumbo nucifera
Oeu012563.1 Olea europaea
Oeu035012.2 Olea europaea
Oeu039724.1 Olea europaea
Oeu045513.2 Olea europaea
Oeu059319.1 Olea europaea
Os01g0367300 Oryza sativa ssp. japonica
Os03g0265600 Oryza sativa ssp. japonica
Os06g0724600 Oryza sativa ssp. japonica
Os08g0385900 Oryza sativa ssp. japonica
Peaxi162Scf00439g00019 Petunia axillaris
Peaxi162Scf00718g00011 Petunia axillaris
Peaxi162Scf01058g00156 Petunia axillaris
PGR042G3708 Punica granatum
PGR102G0455 Punica granatum
PGR119G0392 Punica granatum
PGSC0003DMG400008680 Solanum tuberosum
PGSC0003DMG400022550 Solanum tuberosum
PGSC0003DMG400030345 Solanum tuberosum
PGSC0003DMG402003592 Solanum tuberosum
Phvul.002G104100 Phaseolus vulgaris
Phvul.006G064000 Phaseolus vulgaris
Potri.001G101500 Populus trichocarpa
Potri.001G248100 Populus trichocarpa
Potri.003G130301 Populus trichocarpa
Potri.005G105700 Populus trichocarpa
Potri.009G041700 Populus trichocarpa
Pp3c18_16140 Physcomitrium patens
Pp3c19_7020 Physcomitrium patens
Pp3c1_27480 Physcomitrium patens
Pp3c21_4170 Physcomitrium patens
Prupe.5G103800 Prunus persica
Prupe.6G062700 Prunus persica
Prupe.6G062800 Prunus persica
Prupe.7G175500 Prunus persica
Psat2g151560 Pisum sativum
Psat4g102840 Pisum sativum
Psat5g162440 Pisum sativum
PSO170G4747 Papaver somniferum
PSO210G3651 Papaver somniferum
PSO210G7305 Papaver somniferum
PSO339G6126 Papaver somniferum
PSO384G4580 Papaver somniferum
PSO478G0900 Papaver somniferum
PSO782G3081 Papaver somniferum
PSO832G2006 Papaver somniferum
QL01p027260 Quercus lobata
QL01p027322 Quercus lobata
QL06p052230 Quercus lobata
QL12p032442 Quercus lobata
RcHm_v2.0_Chr2g0098261 Rosa chinensis
RcHm_v2.0_Chr4g0436561 Rosa chinensis
RcHm_v2.0_Chr5g0052501 Rosa chinensis
RcHm_v2.0_Chr5g0068121 Rosa chinensis
RcHm_v2.0_Chr6g0253581 Rosa chinensis
RcHm_v2.0_Chr7g0197131 Rosa chinensis
Rhsim02G0233600 Rhododendron simsii
Rhsim07G0088800 Rhododendron simsii
Rhsim08G0030000 Rhododendron simsii
Rhsim10G0205400 Rhododendron simsii
Rhsim13G0073700 Rhododendron simsii
RhsimUnG0149200 Rhododendron simsii
RhsimUnG0152500 Rhododendron simsii
RhsimUnG0160500 Rhododendron simsii
Sabra01G0076500 Salix brachista
Sabra03G0092600 Salix brachista
Sabra05G0086400 Salix brachista
Sabra16G0150600 Salix brachista
Sc21g0006160 Simmondsia chinensis
Sc22g0005490 Simmondsia chinensis
Sc26g0004490 Simmondsia chinensis
Sed0004633 Sechium edule
Sed0017861 Sechium edule
Sed0019360 Sechium edule
SEGI_08807 Sequoiadendron giganteum
SEGI_30258 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32991 Striga asiatica
SGA_v2.0_scaffold132G34537 Striga asiatica
SHI16714 Sapria himalayana
SMO134G0027 Selaginella moellendorffii
SMO142G0019 Selaginella moellendorffii
SMO147G0109 Selaginella moellendorffii
SMO358G0509 Selaginella moellendorffii
Solyc02g061840.3 Solanum lycopersicum
Solyc02g083320.3 Solanum lycopersicum
Solyc03g033310.4 Solanum lycopersicum
Solyc06g076670.3 Solanum lycopersicum
Sopen02g012870 Solanum pennellii
Sopen02g028110 Solanum pennellii
Sopen03g006090 Solanum pennellii
Sopen06g033060 Solanum pennellii
Sp1g06100 Schrenkiella parvula
Sp3g31100 Schrenkiella parvula
Sp7g33570 Schrenkiella parvula
TAR381G0797 Trochodendron aralioides
TAR623G1169 Trochodendron aralioides
TAR625G0166 Trochodendron aralioides
TAR629G2031 Trochodendron aralioides
TAR636G0776 Trochodendron aralioides
TAR636G1858 Trochodendron aralioides
THA.LOC104800717 Tarenaya hassleriana
Thecc.01G010900 Theobroma cacao
Thecc.03G282000 Theobroma cacao
Thecc.09G307200 Theobroma cacao
Thhalv10008061m.g Eutrema salsugineum
Thhalv10022831m.g Eutrema salsugineum
Thhalv10026015m.g Eutrema salsugineum
TPR.G25109 Trifolium pratense
TPR.G30107 Trifolium pratense
TWI09G0494 Tripterygium wilfordii
TWI38G0235 Tripterygium wilfordii
TWI73G0183 Tripterygium wilfordii
TWI79G1245 Tripterygium wilfordii
unitig_22.g5213 Utricularia gibba
unitig_747.g21811 Utricularia gibba
vmacro02997 Vaccinium macrocarpon
vmacro11389 Vaccinium macrocarpon
vmacro13963 Vaccinium macrocarpon
vmacro18443 Vaccinium macrocarpon
vmacro20498 Vaccinium macrocarpon
VMungo0540G0786 Vigna mungo
VMungo1215G2719 Vigna mungo
Zm00001eb105900 Zea mays
Zm00001eb178540 Zea mays
Zm00001eb228300 Zea mays
Zm00001eb397980 Zea mays
Zm00001eb424040 Zea mays

User provided reference genes

Program Settings