Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p16090 Brassica napus
A06p10300 Brassica napus
A07p31400 Brassica napus
A07p36150 Brassica napus
A08p32020 Brassica napus
A09p62280 Brassica napus
Aa31LG1G730 Aethionema arabicum
Aa31LG4G11050 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2320 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2716 Anthoceros agrestis
Actinidia11635 Actinidia chinensis
Actinidia23152 Actinidia chinensis
Actinidia34504 Actinidia chinensis
Ah.00g000440 Amaranthus hybridus
Ah.11g040730 Amaranthus hybridus
Ah.11g040740 Amaranthus hybridus
Ah.15g090350 Amaranthus hybridus
AL1G26200 Arabidopsis lyrata
AL1G38660 Arabidopsis lyrata
AL2G28920 Arabidopsis lyrata
Aqoxy3G04059 Aquilegia oxysepala
Aqoxy4G03305 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.486F8V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.96DEJ1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BTSH6M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DS63LJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HV716I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UI1KLV Arachis hypogaea
AT1G14320 Arabidopsis thaliana
AT1G26910 Arabidopsis thaliana
AT1G66580 Arabidopsis thaliana
ATR1127G167 Amborella trichopoda
ATR1132G136 Amborella trichopoda
Atru.chr10.2350 Acer truncatum
Atru.chr12.213 Acer truncatum
AUR62006309 Chenopodium quinoa
AUR62013819 Chenopodium quinoa
AUR62026355 Chenopodium quinoa
AUR62036899 Chenopodium quinoa
BcaB03g13104 Brassica carinata
BcaB03g14751 Brassica carinata
BcaB03g15500 Brassica carinata
BcaB05g24482 Brassica carinata
BcaB08g34384 Brassica carinata
BcaC03g15113 Brassica carinata
BcaC05g25325 Brassica carinata
BcaC07g38732 Brassica carinata
BcaC07g41580 Brassica carinata
BcaC08g45867 Brassica carinata
BcaC08g46422 Brassica carinata
BcaNung06710 Brassica carinata
BolC2t08747H Brassica oleracea
BolC5t29961H Brassica oleracea
BolC6t38774H Brassica oleracea
BolC6t39427H Brassica oleracea
BolC8t49287H Brassica oleracea
BolC8t52134H Brassica oleracea
BraA02t06669Z Brassica rapa
BraA04t18941Z Brassica rapa
BraA06t24212Z Brassica rapa
BraA07t30775Z Brassica rapa
BraA07t31191Z Brassica rapa
BraA08t35123Z Brassica rapa
BraA09t41590Z Brassica rapa
C02p26740 Brassica napus
C05p12070 Brassica napus
C06p36650 Brassica napus
C06p43540 Brassica napus
C08p16590 Brassica napus
C08p22700 Brassica napus
C08p45810 Brassica napus
CAN.G1571.1 Capsicum annuum
CAN.G181.25 Capsicum annuum
CAN.G241.6 Capsicum annuum
CAN.G584.8 Capsicum annuum
CAN.G874.65 Capsicum annuum
CANSAT54G1145 Cannabis sativa
CANSAT56G2378 Cannabis sativa
CARHR014750 Cardamine hirsuta
CARHR025030 Cardamine hirsuta
CARHR062810 Cardamine hirsuta
Carub.0001s1400 Capsella rubella
Carub.0002s1642 Capsella rubella
Ca_05525_v3 Cicer arietinum L.
Ca_15080_v3 Cicer arietinum L.
Ca_16852_v3 Cicer arietinum L.
Ca_24969_v3 Cicer arietinum L.
Ca_29500_v3 Cicer arietinum L.
Ca_29719_v3 Cicer arietinum L.
CBR_g29937 Chara braunii
Cc00_g04190 Coffea canephora
Cc01_g15430 Coffea canephora
Cc02_g33060 Coffea canephora
CDE02G2872 Ceratophyllum demersum
CDE02G4451 Ceratophyllum demersum
CDE06G2621 Ceratophyllum demersum
CDE09G1120 Ceratophyllum demersum
Cfa005800 Carpinus fangiana
Cfa009908 Carpinus fangiana
Cfa025094 Carpinus fangiana
Ciclev10002419m.g Citrus clementina
Ciclev10032703m.g Citrus clementina
Ciclev10033837m.g Citrus clementina
CiPaw.06G112200 Carya illinoinensis
CiPaw.13G060700 Carya illinoinensis
ClCG02G000330 Citrullus lanatus
ClCG07G010440 Citrullus lanatus
ClCG11G005510 Citrullus lanatus
COL.COLO4_10171 Corchorus olitorius
COL.COLO4_11227 Corchorus olitorius
COL.COLO4_19486 Corchorus olitorius
Cpa.g.sc2.269 Carica papaya
Cre09.g388200 Chlamydomonas reinhardtii
CsaV3_2G019510 Cucumis sativus L.
CsaV3_4G007890 Cucumis sativus L.
CsaV3_5G039260 Cucumis sativus L.
CSS0004953 Camellia sinensis var. sinensis
CSS0011208 Camellia sinensis var. sinensis
CSS0017928 Camellia sinensis var. sinensis
CSS0026743 Camellia sinensis var. sinensis
DCAR_014384 Daucus carota
DCAR_018582 Daucus carota
Dinv15927 Davidia involucrata
Dinv28751 Davidia involucrata
Duzib114G0724 Durio zibethinus
Duzib128G0825 Durio zibethinus
Duzib168G1129 Durio zibethinus
ECA233G0444 Erigeron canadensis
ECA247G1278 Erigeron canadensis
ECA248G0702 Erigeron canadensis
ECA248G3616 Erigeron canadensis
EL10Ac7g17020 Beta vulgaris
EL10Ac7g17021 Beta vulgaris
Eucgr.B03574 Eucalyptus grandis
Eucgr.J00099 Eucalyptus grandis
FAN01G1766 Fragaria x ananassa
FAN06G0914 Fragaria x ananassa
FAN10G2851 Fragaria x ananassa
FAN10G3384 Fragaria x ananassa
FAN11G2169 Fragaria x ananassa
FAN16G1015 Fragaria x ananassa
FAN18G2131 Fragaria x ananassa
FAN21G2891 Fragaria x ananassa
FAN25G3500 Fragaria x ananassa
FvH4_3g40920 Fragaria vesca
FvH4_5g28360 Fragaria vesca
FvH4_5g28461 Fragaria vesca
FvH4_5g28490 Fragaria vesca
FvH4_7g26240 Fragaria vesca
Glyma.02G220000 Glycine max
Glyma.03G106300 Glycine max
Glyma.04G224000 Glycine max
Glyma.06G140900 Glycine max
Glyma.14G152860 Glycine max
Glyma.14G187800 Glycine max
Glyma.18G050600 Glycine max
Gohir.A05G277100 Gossypium hirsutum
Gohir.A05G404500 Gossypium hirsutum
Gohir.A10G177300 Gossypium hirsutum
Gohir.A13G235000 Gossypium hirsutum
Gohir.D04G011200 Gossypium hirsutum
Gohir.D05G278800 Gossypium hirsutum
Gohir.D10G183900 Gossypium hirsutum
Gohir.D13G240700 Gossypium hirsutum
Gorai.009G292300 Gossypium raimondii
Gorai.011G206100 Gossypium raimondii
Gorai.012G013400 Gossypium raimondii
Gorai.013G271500 Gossypium raimondii
GSVIVG01001137001 Vitis vinifera
GSVIVG01024537001 Vitis vinifera
HanXRQChr01g0012781 Helianthus annuus
HanXRQChr08g0210901 Helianthus annuus
HanXRQChr08g0230861 Helianthus annuus
HanXRQChr13g0391831 Helianthus annuus
Haze_05041 Corylus avellana
Haze_05042 Corylus avellana
Haze_05048 Corylus avellana
Haze_12542 Corylus avellana
Haze_24486 Corylus avellana
Haze_26185 Corylus avellana
HPP92_001793 Vanilla planifolia
HPP92_014088 Vanilla planifolia
HPP92_022874 Vanilla planifolia
Hund05448 Selenicereus undatus
Hund18207 Selenicereus undatus
Lalb_Chr08g0239291 Lupinus albus
Lalb_Chr10g0102881 Lupinus albus
Lalb_Chr11g0067641 Lupinus albus
Lalb_Chr23g0272101 Lupinus albus
Lj1A112G58 Lonicera japonica
Lj1A112T62 Lonicera japonica
Lj1g0025400 Lotus japonicus
Lj2A1104T74 Lonicera japonica
Lj5P334T36 Lonicera japonica
Lj6g0015316 Lotus japonicus
LjContig00408g0021924 Lotus japonicus
Lsat_1_v5_gn_1_19261 Lactuca sativa
Lsat_1_v5_gn_5_177261 Lactuca sativa
Lsat_1_v5_gn_8_98880 Lactuca sativa
Lsat_1_v5_gn_9_13401 Lactuca sativa
Manes.02G217700 Manihot esculenta
Manes.02G218000 Manihot esculenta
Manes.18G125200 Manihot esculenta
Mapoly0020s0158 Marchantia polymorpha
MBI02_g15930_MAGBIO Magnolia biondii
MBI04_g25416_MAGBIO Magnolia biondii
MBI11_g22247_MAGBIO Magnolia biondii
MBI15_g31041_MAGBIO Magnolia biondii
MCO01G089 Micromonas commoda
MD01G1171100 Malus domestica
MD03G1048400 Malus domestica
MD03G1145000 Malus domestica
MD03G1145600 Malus domestica
MD07G1237500 Malus domestica
MD11G1051200 Malus domestica
Medtr2g090910 Medicago truncatula
Medtr3g062600 Medicago truncatula
Medtr3g094230 Medicago truncatula
MELO3C016148.2 Cucumis melo
MELO3C022104.2 Cucumis melo
MELO3C023223.2 Cucumis melo
Migut.D00806 Erythranthe guttata
Migut.J01458 Erythranthe guttata
MSTRG.14747 Avicennia marina
MSTRG.18532 Avicennia marina
MSTRG.26230 Avicennia marina
MSTRG.6199 Avicennia marina
Nitab4.5_0000105g0280 Nicotiana tabacum
Nitab4.5_0000244g0330 Nicotiana tabacum
Nitab4.5_0000311g0060 Nicotiana tabacum
Nitab4.5_0002167g0010 Nicotiana tabacum
Nitab4.5_0002902g0030 Nicotiana tabacum
Nitab4.5_0003194g0050 Nicotiana tabacum
Nitab4.5_0005574g0030 Nicotiana tabacum
Nitab4.5_0007040g0040 Nicotiana tabacum
Nn2g10232 Nelumbo nucifera
Nn3g16180 Nelumbo nucifera
Oeu005349.1 Olea europaea
Oeu025213.1 Olea europaea
Oeu029990.1 Olea europaea
Oeu058227.1 Olea europaea
Oeu058229.1 Olea europaea
Oeu064694.1 Olea europaea
Os03g0332500 Oryza sativa ssp. japonica
Os05g0169100 Oryza sativa ssp. japonica
Os11g0220800 Oryza sativa ssp. japonica
Peaxi162Scf00131g01212 Petunia axillaris
Peaxi162Scf00390g00215 Petunia axillaris
Peaxi162Scf00455g00019 Petunia axillaris
Peaxi162Scf00610g00034 Petunia axillaris
PGR044G1642 Punica granatum
PGR102G3243 Punica granatum
PGR142G2728 Punica granatum
PGSC0003DMG400002405 Solanum tuberosum
PGSC0003DMG400020636 Solanum tuberosum
PGSC0003DMG400030386 Solanum tuberosum
Phvul.001G052700 Phaseolus vulgaris
Phvul.006G080600 Phaseolus vulgaris
Phvul.008G187000 Phaseolus vulgaris
Phvul.009G042100 Phaseolus vulgaris
Phvul.010G043500 Phaseolus vulgaris
Potri.013G159301 Populus trichocarpa
Potri.013G159600 Populus trichocarpa
Potri.019G131900 Populus trichocarpa
Pp3c11_4130 Physcomitrium patens
Pp3c1_3170 Physcomitrium patens
Pp3c22_22010 Physcomitrium patens
Pp3c2_29600 Physcomitrium patens
Pp3c7_22400 Physcomitrium patens
PRCOL_00005010 Prasinoderma coloniale
Prupe.2G266600 Prunus persica
Prupe.6G039000 Prunus persica
Prupe.8G107100 Prunus persica
Psat0s3366g0120 Pisum sativum
Psat2g062400 Pisum sativum
Psat4g197080 Pisum sativum
Psat5g069720 Pisum sativum
Psat5g146840 Pisum sativum
Psat6g136200 Pisum sativum
Psat7g219200 Pisum sativum
PSO017G0998 Papaver somniferum
PSO170G1120 Papaver somniferum
PSO339G2036 Papaver somniferum
PSO339G6209 Papaver somniferum
PSO384G1889 Papaver somniferum
PSO478G2061 Papaver somniferum
PSO541G0780 Papaver somniferum
PSO541G1575 Papaver somniferum
PSO675G6768 Papaver somniferum
PSO837G0052 Papaver somniferum
QL01p023786 Quercus lobata
QL08p065170 Quercus lobata
RcHm_v2.0_Chr1g0372691 Rosa chinensis
RcHm_v2.0_Chr5g0073671 Rosa chinensis
Rhsim01G0244400 Rhododendron simsii
Rhsim13G0057500 Rhododendron simsii
Sabra09G0061100 Salix brachista
Sabra13G0127800 Salix brachista
Sabra19G0128600 Salix brachista
SalBow5G5155 Salvia bowleyana
Sc10g0002730 Simmondsia chinensis
Sc11g0005410 Simmondsia chinensis
Sed0001877 Sechium edule
Sed0004050 Sechium edule
Sed0010576 Sechium edule
Sed0018411 Sechium edule
SEGI_07499 Sequoiadendron giganteum
SGA_v2.0_scaffold66G22466 Striga asiatica
SGA_v2.0_scaffold66G22514 Striga asiatica
SGA_v2.0_scaffold69G23278 Striga asiatica
SGA_v2.0_scaffold69G23309 Striga asiatica
SMO151G0002 Selaginella moellendorffii
SMO337G0102 Selaginella moellendorffii
SMO367G0253 Selaginella moellendorffii
Solyc06g007520.4 Solanum lycopersicum
Solyc06g082650.4 Solanum lycopersicum
Solyc06g082670.3 Solanum lycopersicum
Sopen06g002430 Solanum pennellii
Sopen06g034040 Solanum pennellii
Sopen06g034060 Solanum pennellii
Sp1g12670 Schrenkiella parvula
Sp1g21870 Schrenkiella parvula
Sp5g24860 Schrenkiella parvula
TAR369G0143 Trochodendron aralioides
TAR623G1738 Trochodendron aralioides
TAR629G0493 Trochodendron aralioides
TAR633G0688 Trochodendron aralioides
THA.LOC104801790 Tarenaya hassleriana
THA.LOC104805151 Tarenaya hassleriana
THA.LOC104822190 Tarenaya hassleriana
THA.LOC104822920 Tarenaya hassleriana
THA.LOC104824078 Tarenaya hassleriana
Thecc.02G301200 Theobroma cacao
Thecc.09G365500 Theobroma cacao
Thecc.10G186300 Theobroma cacao
Thhalv10008763m.g Eutrema salsugineum
Thhalv10019112m.g Eutrema salsugineum
TPR.G13800 Trifolium pratense
TPR.G13899 Trifolium pratense
TPR.G13968 Trifolium pratense
TPR.G33947 Trifolium pratense
TPR.G8398 Trifolium pratense
TWI09G0212 Tripterygium wilfordii
TWI53G0598 Tripterygium wilfordii
TWI79G0978 Tripterygium wilfordii
unitig_0.g213 Utricularia gibba
unitig_0.g2149 Utricularia gibba
unitig_747.g21440 Utricularia gibba
vmacro02863 Vaccinium macrocarpon
vmacro14652 Vaccinium macrocarpon
VMungo0540G0183 Vigna mungo
VMungo0647G1613 Vigna mungo
VMungo1309G2686 Vigna mungo
Zm00001eb049570 Zea mays
Zm00001eb150930 Zea mays
Zm00001eb219490 Zea mays

User provided reference genes

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