Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p23810 Brassica napus
A02p18510 Brassica napus
A05p38740 Brassica napus
A09p32960 Brassica napus
Aa31LG3G3030 Aethionema arabicum
Aa31LG4G3450 Aethionema arabicum
Aa31LG6G7840 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5732 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1293 Anthoceros agrestis
Actinidia01531 Actinidia chinensis
Actinidia18789 Actinidia chinensis
Actinidia34799 Actinidia chinensis
Actinidia35223 Actinidia chinensis
Actinidia35224 Actinidia chinensis
Actinidia38877 Actinidia chinensis
Ah.01g001860 Amaranthus hybridus
Ah.04g164320 Amaranthus hybridus
Ah.06g185230 Amaranthus hybridus
AL1G47690 Arabidopsis lyrata
AL2G32930 Arabidopsis lyrata
AL3G21790 Arabidopsis lyrata
Aqoxy1G01126 Aquilegia oxysepala
Aqoxy4G00486 Aquilegia oxysepala
Aqoxy6G00031 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7D105I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7Y3RHD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B6VVPR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D34DFJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EJT3BV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KPN1N6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SM1M7J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YLYM4T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZP448L Arachis hypogaea
AT1G33290 Arabidopsis thaliana
AT1G73170 Arabidopsis thaliana
AT3G10420 Arabidopsis thaliana
ATR0602G178 Amborella trichopoda
ATR0665G476 Amborella trichopoda
ATR1089G059 Amborella trichopoda
Atru.BG.230.p Acer truncatum
Atru.chr12.872 Acer truncatum
Atru.chr12.873 Acer truncatum
Atru.chr2.2252 Acer truncatum
AUR62015118 Chenopodium quinoa
AUR62017581 Chenopodium quinoa
AUR62019556 Chenopodium quinoa
AUR62019557 Chenopodium quinoa
AUR62019558 Chenopodium quinoa
AUR62037874 Chenopodium quinoa
AUR62037875 Chenopodium quinoa
BcaB04g21212 Brassica carinata
BcaB07g32968 Brassica carinata
BcaC05g29469 Brassica carinata
BcaC08g43877 Brassica carinata
BcaNung04923 Brassica carinata
BolC1t05402H Brassica oleracea
BolC2t09125H Brassica oleracea
BolC5t34426H Brassica oleracea
BolC5t34432H Brassica oleracea
BolC6t36415H Brassica oleracea
BolC9t59000H Brassica oleracea
BraA02t06890Z Brassica rapa
BraA05t22665Z Brassica rapa
BraA09t38836Z Brassica rapa
C02p30700 Brassica napus
C05p57690 Brassica napus
C05p57700 Brassica napus
C05p57750 Brassica napus
C06p12640 Brassica napus
C09p61620 Brassica napus
CAN.G1390.1 Capsicum annuum
CAN.G321.50 Capsicum annuum
CANSAT35G0436 Cannabis sativa
CANSAT56G2515 Cannabis sativa
CARHR032670 Cardamine hirsuta
CARHR066150 Cardamine hirsuta
CARHR066160 Cardamine hirsuta
CARHR084910 Cardamine hirsuta
Carub.0001s3149 Capsella rubella
Carub.0002s1995 Capsella rubella
Carub.0003s0961 Capsella rubella
Ca_11193_v3 Cicer arietinum L.
Ca_26091_v3 Cicer arietinum L.
CBR_g20454 Chara braunii
CBR_g23317 Chara braunii
Cc02_g10800 Coffea canephora
Cc05_g11420 Coffea canephora
Cc10_g16230 Coffea canephora
CDE02G4584 Ceratophyllum demersum
CDE05G0400 Ceratophyllum demersum
CDE05G0479 Ceratophyllum demersum
CDE05G1462 Ceratophyllum demersum
CDE05G1876 Ceratophyllum demersum
CDE09G0931 Ceratophyllum demersum
Cfa001802 Carpinus fangiana
Cfa019601 Carpinus fangiana
Ciclev10010563m.g Citrus clementina
Ciclev10020352m.g Citrus clementina
Ciclev10030851m.g Citrus clementina
CiPaw.01G267600 Carya illinoinensis
CiPaw.03G010600 Carya illinoinensis
CiPaw.11G163500 Carya illinoinensis
ClCG08G007800 Citrullus lanatus
ClCG11G017580 Citrullus lanatus
COL.COLO4_17613 Corchorus olitorius
COL.COLO4_36550 Corchorus olitorius
Cpa.g.sc131.68 Carica papaya
Cpa.g.sc131.69 Carica papaya
Cpa.g.sc53.144 Carica papaya
Cre06.g299200 Chlamydomonas reinhardtii
Cre06.g300400 Chlamydomonas reinhardtii
Cre06.g300450 Chlamydomonas reinhardtii
Cre12.g496150 Chlamydomonas reinhardtii
Cre16.g676850 Chlamydomonas reinhardtii
Cre16.g682811 Chlamydomonas reinhardtii
Cre16.g683035 Chlamydomonas reinhardtii
Cre17.g716050 Chlamydomonas reinhardtii
CsaV3_2G020890 Cucumis sativus L.
CsaV3_2G021110 Cucumis sativus L.
CsaV3_2G021120 Cucumis sativus L.
CsaV3_4G033260 Cucumis sativus L.
CSS0012751 Camellia sinensis var. sinensis
CSS0026586 Camellia sinensis var. sinensis
CSS0041061 Camellia sinensis var. sinensis
DCAR_010122 Daucus carota
DCAR_019064 Daucus carota
DCAR_019588 Daucus carota
Dinv18342 Davidia involucrata
Dinv22074 Davidia involucrata
Dinv36384 Davidia involucrata
Duzib106G0034 Durio zibethinus
Duzib170G0291 Durio zibethinus
ECA232G1029 Erigeron canadensis
ECA232G2749 Erigeron canadensis
ECA232G3154 Erigeron canadensis
ECA236G0336 Erigeron canadensis
EL10Ac4g08326 Beta vulgaris
EL10Ac9g22792 Beta vulgaris
EL10Ac9g22796 Beta vulgaris
EL10Ac9g22801 Beta vulgaris
EL10Ac9g22803 Beta vulgaris
EL10Ac9g22819 Beta vulgaris
Eucgr.F03249 Eucalyptus grandis
Eucgr.F04102 Eucalyptus grandis
Eucgr.J01045 Eucalyptus grandis
FAN01G1128 Fragaria x ananassa
FAN03G3235 Fragaria x ananassa
FAN06G1750 Fragaria x ananassa
FAN06G2865 Fragaria x ananassa
FAN10G1388 Fragaria x ananassa
FAN10G3933 Fragaria x ananassa
FAN11G4014 Fragaria x ananassa
FAN16G2367 Fragaria x ananassa
FAN19G2408 Fragaria x ananassa
FAN21G0150 Fragaria x ananassa
FAN25G3778 Fragaria x ananassa
FvH4_2g00120 Fragaria vesca
FvH4_3g18730 Fragaria vesca
FvH4_4g08471 Fragaria vesca
FvH4_6g20602 Fragaria vesca
FvH4_6g38552 Fragaria vesca
FvH4_7g17990 Fragaria vesca
FvH4_7g18530 Fragaria vesca
Glyma.06G232100 Glycine max
Glyma.10G276400 Glycine max
Glyma.20G113300 Glycine max
Glyma.20G213000 Glycine max
Gohir.A01G058600 Gossypium hirsutum
Gohir.A10G201300 Gossypium hirsutum
Gohir.D01G044800 Gossypium hirsutum
Gohir.D10G209100 Gossypium hirsutum
Gorai.002G064400 Gossypium raimondii
Gorai.011G235200 Gossypium raimondii
GSVIVG01014235001 Vitis vinifera
GSVIVG01016194001 Vitis vinifera
GSVIVG01037109001 Vitis vinifera
HanXRQChr11g0326511 Helianthus annuus
HanXRQChr13g0404501 Helianthus annuus
HanXRQChr15g0494221 Helianthus annuus
Haze_09357 Corylus avellana
Haze_14031 Corylus avellana
Haze_16749 Corylus avellana
Hma1.2p1_0378F.1_g139720 Hydrangea macrophylla
HPP92_004659 Vanilla planifolia
HPP92_010176 Vanilla planifolia
HPP92_010244 Vanilla planifolia
HPP92_021760 Vanilla planifolia
HPP92_026766 Vanilla planifolia
Hund02250 Selenicereus undatus
Hund04590 Selenicereus undatus
Hund24212 Selenicereus undatus
Hund24219 Selenicereus undatus
Hund24224 Selenicereus undatus
Hund30308 Selenicereus undatus
Hund30309 Selenicereus undatus
Hund30810 Selenicereus undatus
Hund30811 Selenicereus undatus
Lalb_Chr06g0166191 Lupinus albus
Lalb_Chr06g0168841 Lupinus albus
Lalb_Chr19g0133931 Lupinus albus
Lj3C938G2 Lonicera japonica
Lj3g0025658 Lotus japonicus
Lj5g0007344 Lotus japonicus
Lj5g0026180 Lotus japonicus
Lj7A414G40 Lonicera japonica
Lj8A151T53 Lonicera japonica
Lsat_1_v5_gn_3_2461 Lactuca sativa
Lsat_1_v5_gn_4_131781 Lactuca sativa
Lsat_1_v5_gn_7_103120 Lactuca sativa
Lsat_1_v5_gn_9_69640 Lactuca sativa
Manes.07G094300 Manihot esculenta
Manes.15G091200 Manihot esculenta
Manes.15G183700 Manihot esculenta
Mapoly0010s0157 Marchantia polymorpha
MBI01_g31370_MAGBIO Magnolia biondii
MBI03_g24412_MAGBIO Magnolia biondii
MBI03_g28850_MAGBIO Magnolia biondii
MBI07_g17043_MAGBIO Magnolia biondii
MCO06G139 Micromonas commoda
MCO11G151 Micromonas commoda
MD00G1103600 Malus domestica
MD01G1101700 Malus domestica
MD03G1239300 Malus domestica
MD03G1239400 Malus domestica
MD05G1000300 Malus domestica
MD07G1168300 Malus domestica
MD11G1259100 Malus domestica
Medtr1g076810 Medicago truncatula
Medtr1g111400 Medicago truncatula
Medtr8g463650 Medicago truncatula
MELO3C019832.2 Cucumis melo
MELO3C025630.2 Cucumis melo
Migut.C01410 Erythranthe guttata
Migut.F01708 Erythranthe guttata
Migut.M00748 Erythranthe guttata
Migut.M00749 Erythranthe guttata
MSTRG.393 Avicennia marina
MSTRG.6807 Avicennia marina
Nitab4.5_0000035g0010 Nicotiana tabacum
Nitab4.5_0000710g0060 Nicotiana tabacum
Nitab4.5_0001450g0010 Nicotiana tabacum
Nitab4.5_0001629g0010 Nicotiana tabacum
Nitab4.5_0004828g0040 Nicotiana tabacum
Nitab4.5_0008227g0030 Nicotiana tabacum
Nn1g00852 Nelumbo nucifera
Nn1g02354 Nelumbo nucifera
Nn1g04340 Nelumbo nucifera
Nn3g17403 Nelumbo nucifera
Nn4g23413 Nelumbo nucifera
Nn5g27158 Nelumbo nucifera
Nn6g35251 Nelumbo nucifera
Oeu013851.1 Olea europaea
Oeu059275.3 Olea europaea
Os06g0155600 Oryza sativa ssp. japonica
Os07g0187400 Oryza sativa ssp. japonica
Os12g0209000 Oryza sativa ssp. japonica
Peaxi162Scf00000g00221 Petunia axillaris
Peaxi162Scf00145g00812 Petunia axillaris
Peaxi162Scf00852g00061 Petunia axillaris
PGR044G1477 Punica granatum
PGR044G2472 Punica granatum
PGSC0003DMG400002837 Solanum tuberosum
PGSC0003DMG400031081 Solanum tuberosum
Phvul.007G025200 Phaseolus vulgaris
Phvul.007G113200 Phaseolus vulgaris
Phvul.011G160500 Phaseolus vulgaris
Potri.001G375900 Populus trichocarpa
Potri.010G228600 Populus trichocarpa
Pp3c14_10860 Physcomitrium patens
Pp3c17_10950 Physcomitrium patens
PRCOL_00001349 Prasinoderma coloniale
PRCOL_00002208 Prasinoderma coloniale
Prupe.2G206900 Prunus persica
Prupe.4G171000 Prunus persica
Prupe.8G001000 Prunus persica
Psat4g137080 Pisum sativum
Psat6g112280 Pisum sativum
Psat6g229720 Pisum sativum
PSO017G2295 Papaver somniferum
PSO170G3314 Papaver somniferum
PSO339G3966 Papaver somniferum
PSO782G2512 Papaver somniferum
QL03p058546 Quercus lobata
QL08p027181 Quercus lobata
QL08p027199 Quercus lobata
QL08p027216 Quercus lobata
QL08p053655 Quercus lobata
QL09p000896 Quercus lobata
RcHm_v2.0_Chr1g0362311 Rosa chinensis
RcHm_v2.0_Chr5g0031521 Rosa chinensis
RcHm_v2.0_Chr6g0249381 Rosa chinensis
Rhsim04G0024300 Rhododendron simsii
Rhsim09G0146900 Rhododendron simsii
Rhsim12G0000400 Rhododendron simsii
Sabra10G0177300 Salix brachista
Sabra16G0247800 Salix brachista
SalBow6G5878 Salvia bowleyana
SalBow7G3160 Salvia bowleyana
SalBow8G3795 Salvia bowleyana
SalBow8G5238 Salvia bowleyana
Sc03g0010410 Simmondsia chinensis
Sc06g0002060 Simmondsia chinensis
Sed0013593 Sechium edule
Sed0013834 Sechium edule
SEGI_11016 Sequoiadendron giganteum
SEGI_12242 Sequoiadendron giganteum
SEGI_17700 Sequoiadendron giganteum
SEGI_23479 Sequoiadendron giganteum
SEGI_26967 Sequoiadendron giganteum
SEGI_32931 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32653 Striga asiatica
SGA_v2.0_scaffold73G24205 Striga asiatica
SMO116G0013 Selaginella moellendorffii
SMO174G0125 Selaginella moellendorffii
Solyc04g005830.3 Solanum lycopersicum
Solyc11g008250.2 Solanum lycopersicum
Solyc12g014150.3 Solanum lycopersicum
Solyc12g014160.3 Solanum lycopersicum
Sopen04g001890 Solanum pennellii
Sopen11g004060 Solanum pennellii
Sopen12g005940 Solanum pennellii
Sp1g28750 Schrenkiella parvula
Sp3g08700 Schrenkiella parvula
Sp5g28130 Schrenkiella parvula
SpUn1429_0010 Schrenkiella parvula
TAR626G0861 Trochodendron aralioides
TAR628G1194 Trochodendron aralioides
TAR633G0552 Trochodendron aralioides
TAR633G2145 Trochodendron aralioides
TAR636G3645 Trochodendron aralioides
THA.LOC104813294 Tarenaya hassleriana
THA.LOC104815626 Tarenaya hassleriana
THA.LOC104823203 Tarenaya hassleriana
Thecc.07G104000 Theobroma cacao
Thecc.10G086300 Theobroma cacao
Thhalv10007949m.g Eutrema salsugineum
Thhalv10016033m.g Eutrema salsugineum
Thhalv10018237m.g Eutrema salsugineum
Thhalv10020197m.g Eutrema salsugineum
TPR.G11058 Trifolium pratense
TPR.G16628 Trifolium pratense
TPR.G26285 Trifolium pratense
TPR.G6790 Trifolium pratense
TPR.G9378 Trifolium pratense
TWI12G0441 Tripterygium wilfordii
TWI38G1273 Tripterygium wilfordii
TWI39G1304 Tripterygium wilfordii
unitig_85.g27414 Utricularia gibba
unitig_86.g29834 Utricularia gibba
unitig_899.g15042 Utricularia gibba
vmacro00906 Vaccinium macrocarpon
vmacro00907 Vaccinium macrocarpon
vmacro06393 Vaccinium macrocarpon
vmacro06394 Vaccinium macrocarpon
vmacro09504 Vaccinium macrocarpon
vmacro10246 Vaccinium macrocarpon
vmacro16640 Vaccinium macrocarpon
VMungo0720G1646 Vigna mungo
VMungo0720G2402 Vigna mungo
VMungo0720G2878 Vigna mungo
Zm00001eb005420 Zea mays
Zm00001eb116580 Zea mays
Zm00001eb271060 Zea mays

User provided reference genes

Program Settings