Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00280 Brassica napus
A03p45750 Brassica napus
A04p16230 Brassica napus
A06p48640 Brassica napus
A08p23740 Brassica napus
A09p58110 Brassica napus
Aa31LG2G15970 Aethionema arabicum
Aa31LG6G16050 Aethionema arabicum
Aa31LG7G14900 Aethionema arabicum
Aa31LG8G13730 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.837 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1608 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1288 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1292 Anthoceros agrestis
Actinidia00537 Actinidia chinensis
Actinidia17806 Actinidia chinensis
Actinidia27887 Actinidia chinensis
Ah.01g019220 Amaranthus hybridus
AL3G52500 Arabidopsis lyrata
AL4G10780 Arabidopsis lyrata
AL7G11160 Arabidopsis lyrata
AL7G16660 Arabidopsis lyrata
Aqoxy4G01656 Aquilegia oxysepala
Aqoxy4G02761 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.16MNR3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.23MTW0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7C619S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8N4V0D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D8CMXH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DXQ6L2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HF8X40 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LCB0K0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V3A3J9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WB4NLC Arachis hypogaea
AT2G16360 Arabidopsis thaliana
AT2G21580 Arabidopsis thaliana
AT4G34555 Arabidopsis thaliana
AT4G39200 Arabidopsis thaliana
ATR0568G047 Amborella trichopoda
ATR0776G045 Amborella trichopoda
Atru.chr12.1028 Acer truncatum
Atru.chr12.1031 Acer truncatum
Atru.chr2.1284 Acer truncatum
Atru.chr3.3234 Acer truncatum
Atru.chr4.633 Acer truncatum
Atru.chr5.3050 Acer truncatum
AUR62011297 Chenopodium quinoa
AUR62016761 Chenopodium quinoa
BcaB03g12252 Brassica carinata
BcaB06g27770 Brassica carinata
BcaB08g34985 Brassica carinata
BcaC02g08783 Brassica carinata
BcaC07g41135 Brassica carinata
BcaNung01274 Brassica carinata
BcaNung02350 Brassica carinata
BcaNung03885 Brassica carinata
BcaNung07122 Brassica carinata
BolC1t00045H Brassica oleracea
BolC3t20027H Brassica oleracea
BolC4t26667H Brassica oleracea
BolC7t46742H Brassica oleracea
BraA01t00035Z Brassica rapa
BraA04t17262Z Brassica rapa
BraA06t27731Z Brassica rapa
BraA08t34326Z Brassica rapa
BraA09t41199Z Brassica rapa
C01p00400 Brassica napus
C03p77700 Brassica napus
C04p50700 Brassica napus
C07p63310 Brassica napus
C08p41380 Brassica napus
CAN.G1153.7 Capsicum annuum
CAN.G1352.1 Capsicum annuum
CAN.G179.48 Capsicum annuum
CAN.G79.41 Capsicum annuum
CANSAT01G2051 Cannabis sativa
CANSAT56G0927 Cannabis sativa
CARHR106570 Cardamine hirsuta
CARHR112530 Cardamine hirsuta
CARHR242850 Cardamine hirsuta
CARHR247520 Cardamine hirsuta
Carub.0004s0061 Capsella rubella
Carub.0007s0111 Capsella rubella
Carub.0007s0574 Capsella rubella
Ca_01653_v3 Cicer arietinum L.
Ca_20901_v3 Cicer arietinum L.
CBR_g8278 Chara braunii
Cc02_g17330 Coffea canephora
CDE04G1189 Ceratophyllum demersum
CDE04G1722 Ceratophyllum demersum
CDE07G1736 Ceratophyllum demersum
CDE12G0133 Ceratophyllum demersum
Cfa021940 Carpinus fangiana
Ciclev10017451m.g Citrus clementina
Ciclev10029626m.g Citrus clementina
Ciclev10029627m.g Citrus clementina
CiPaw.03G104600 Carya illinoinensis
CiPaw.05G066800 Carya illinoinensis
CiPaw.06G134000 Carya illinoinensis
CiPaw.13G039800 Carya illinoinensis
CiPaw.13G040000 Carya illinoinensis
ClCG01G025110 Citrullus lanatus
ClCG03G016480 Citrullus lanatus
ClCG04G000630 Citrullus lanatus
ClCG08G008280 Citrullus lanatus
COL.COLO4_25962 Corchorus olitorius
Cpa.g.sc56.10 Carica papaya
Cpa.g.sc56.11 Carica papaya
Cpa.g.sc94.48 Carica papaya
Cre08.g382500 Chlamydomonas reinhardtii
CsaV3_1G039500 Cucumis sativus L.
CsaV3_4G031420 Cucumis sativus L.
CsaV3_6G004250 Cucumis sativus L.
CSS0012026 Camellia sinensis var. sinensis
CSS0032188 Camellia sinensis var. sinensis
CSS0040094 Camellia sinensis var. sinensis
DCAR_001565 Daucus carota
DCAR_003662 Daucus carota
Dinv22837 Davidia involucrata
Dinv23500 Davidia involucrata
Dinv42050 Davidia involucrata
Dinv42547 Davidia involucrata
Duzib052G1062 Durio zibethinus
Duzib132G0966 Durio zibethinus
Duzib150G1601 Durio zibethinus
Duzib170G0231 Durio zibethinus
Duzib248G0750 Durio zibethinus
Duzib248G1325 Durio zibethinus
Duzib248G1464 Durio zibethinus
ECA232G1466 Erigeron canadensis
ECA233G2939 Erigeron canadensis
EL10Ac9g21702 Beta vulgaris
Eucgr.G01616 Eucalyptus grandis
Eucgr.G01617 Eucalyptus grandis
Eucgr.G01618 Eucalyptus grandis
Eucgr.G01620 Eucalyptus grandis
Eucgr.G01621 Eucalyptus grandis
Eucgr.G01623 Eucalyptus grandis
Eucgr.G02690 Eucalyptus grandis
Eucgr.I01282 Eucalyptus grandis
Eucgr.L02469 Eucalyptus grandis
FAN02G3505 Fragaria x ananassa
FAN03G2123 Fragaria x ananassa
FAN06G1358 Fragaria x ananassa
FAN10G1312 Fragaria x ananassa
FAN11G0123 Fragaria x ananassa
FAN11G0881 Fragaria x ananassa
FAN11G2760 Fragaria x ananassa
FAN14G0303 Fragaria x ananassa
FAN15G1470 Fragaria x ananassa
FAN16G0905 Fragaria x ananassa
FAN16G2432 Fragaria x ananassa
FAN19G2801 Fragaria x ananassa
FAN21G2514 Fragaria x ananassa
FAN23G0899 Fragaria x ananassa
FAN24G2215 Fragaria x ananassa
FAN25G0005 Fragaria x ananassa
FAN25G0632 Fragaria x ananassa
FAN25G3543 Fragaria x ananassa
FAN26G0222 Fragaria x ananassa
FAN27G2378 Fragaria x ananassa
FvH4_1g21830 Fragaria vesca
FvH4_2g09230 Fragaria vesca
FvH4_3g21050 Fragaria vesca
FvH4_3g25090 Fragaria vesca
FvH4_3g25350 Fragaria vesca
FvH4_5g07911 Fragaria vesca
FvH4_7g07520 Fragaria vesca
Glyma.04G011100 Glycine max
Glyma.06G011000 Glycine max
Glyma.11G115400 Glycine max
Glyma.12G041300 Glycine max
Gohir.A01G004400 Gossypium hirsutum
Gohir.A03G195900 Gossypium hirsutum
Gohir.A04G124800 Gossypium hirsutum
Gohir.A12G029901 Gossypium hirsutum
Gohir.A13G033400 Gossypium hirsutum
Gohir.D01G004400 Gossypium hirsutum
Gohir.D02G217000 Gossypium hirsutum
Gohir.D04G166900 Gossypium hirsutum
Gohir.D12G029200 Gossypium hirsutum
Gohir.D13G031300 Gossypium hirsutum
Gorai.002G005300 Gossypium raimondii
Gorai.005G245000 Gossypium raimondii
Gorai.008G029900 Gossypium raimondii
Gorai.012G155200 Gossypium raimondii
Gorai.013G035700 Gossypium raimondii
GSVIVG01000974001 Vitis vinifera
GSVIVG01010721001 Vitis vinifera
GSVIVG01023806001 Vitis vinifera
HanXRQChr05g0147841 Helianthus annuus
HanXRQChr06g0181071 Helianthus annuus
HanXRQChr07g0194301 Helianthus annuus
HanXRQChr08g0217281 Helianthus annuus
HanXRQChr11g0321341 Helianthus annuus
HanXRQChr11g0342101 Helianthus annuus
HanXRQChr12g0376191 Helianthus annuus
HanXRQChr16g0508001 Helianthus annuus
Haze_02409 Corylus avellana
Haze_02411 Corylus avellana
Haze_02489 Corylus avellana
Haze_23367 Corylus avellana
Haze_26152 Corylus avellana
Hma1.2p1_0066F.1_g036230 Hydrangea macrophylla
Hma1.2p1_2496F.1_g323300 Hydrangea macrophylla
HPP92_001106 Vanilla planifolia
HPP92_027556 Vanilla planifolia
Hund00248 Selenicereus undatus
Hund06260 Selenicereus undatus
Hund20904 Selenicereus undatus
Lalb_Chr01g0002421 Lupinus albus
Lalb_Chr03g0025541 Lupinus albus
Lalb_Chr08g0246661 Lupinus albus
Lalb_Chr19g0138751 Lupinus albus
Lalb_Chr23g0265351 Lupinus albus
Lj1g0010638 Lotus japonicus
Lsat_1_v5_gn_0_8021 Lactuca sativa
Lsat_1_v5_gn_5_119301 Lactuca sativa
Lsat_1_v5_gn_8_24221 Lactuca sativa
Lsat_1_v5_gn_9_108360 Lactuca sativa
Manes.04G003200 Manihot esculenta
Manes.07G087100 Manihot esculenta
Manes.11G085400 Manihot esculenta
Manes.11G162400 Manihot esculenta
Mapoly0114s0042 Marchantia polymorpha
MBI11_g26445_MAGBIO Magnolia biondii
MBI17_g08332_MAGBIO Magnolia biondii
MCO16G607 Micromonas commoda
MD02G1289800 Malus domestica
MD03G1147300 Malus domestica
MD07G1037200 Malus domestica
MD11G1166000 Malus domestica
Medtr2g086610 Medicago truncatula
Medtr3g117040 Medicago truncatula
Medtr4g070600 Medicago truncatula
Medtr6g015615 Medicago truncatula
MELO3C009036.2 Cucumis melo
MELO3C015373.2 Cucumis melo
MELO3C019896.2 Cucumis melo
Migut.B00220 Erythranthe guttata
Migut.N01250 Erythranthe guttata
MSTRG.16818 Avicennia marina
MSTRG.20070 Avicennia marina
MSTRG.27690 Avicennia marina
MSTRG.5403 Avicennia marina
Nitab4.5_0001225g0020 Nicotiana tabacum
Nitab4.5_0004615g0070 Nicotiana tabacum
Nitab4.5_0007728g0060 Nicotiana tabacum
Nitab4.5_0009921g0010 Nicotiana tabacum
Nn1g04017 Nelumbo nucifera
Nn1g04922 Nelumbo nucifera
Nn1g06609 Nelumbo nucifera
Nn5g29675 Nelumbo nucifera
Nn7g36460 Nelumbo nucifera
Oeu003729.1 Olea europaea
Oeu020744.1 Olea europaea
Oeu055601.1 Olea europaea
Oeu061218.1 Olea europaea
Os08g0559200 Oryza sativa ssp. japonica
Os09g0568800 Oryza sativa ssp. japonica
Os11g0153800 Oryza sativa ssp. japonica
Peaxi162Scf00003g01123 Petunia axillaris
Peaxi162Scf00539g00411 Petunia axillaris
Peaxi162Scf00684g00227 Petunia axillaris
PGR042G2896 Punica granatum
PGR119G1105 Punica granatum
PGR142G3009 Punica granatum
PGSC0003DMG400007731 Solanum tuberosum
PGSC0003DMG400021189 Solanum tuberosum
PGSC0003DMG400027535 Solanum tuberosum
Phvul.009G022600 Phaseolus vulgaris
Phvul.011G043300 Phaseolus vulgaris
Potri.004G157200 Populus trichocarpa
Potri.008G020000 Populus trichocarpa
Potri.009G118900 Populus trichocarpa
Potri.010G239300 Populus trichocarpa
Pp3c14_13580 Physcomitrium patens
Pp3c17_4670 Physcomitrium patens
Pp3c1_25330 Physcomitrium patens
Pp3c2_14800 Physcomitrium patens
PRCOL_00001699 Prasinoderma coloniale
Prupe.2G075600 Prunus persica
Prupe.7G005700 Prunus persica
Psat5g004920 Pisum sativum
Psat5g258160 Pisum sativum
Psat7g183600 Pisum sativum
PSO339G3513 Papaver somniferum
PSO339G5833 Papaver somniferum
PSO384G1230 Papaver somniferum
PSO731G0107 Papaver somniferum
PSO764G0247 Papaver somniferum
PSO801G0852 Papaver somniferum
QL01p012145 Quercus lobata
QL01p020763 Quercus lobata
QL04p046692 Quercus lobata
QL04p081473 Quercus lobata
QL11p044426 Quercus lobata
RcHm_v2.0_Chr1g0339301 Rosa chinensis
RcHm_v2.0_Chr3g0463111 Rosa chinensis
RcHm_v2.0_Chr5g0045631 Rosa chinensis
RcHm_v2.0_Chr6g0265071 Rosa chinensis
Rhsim05G0072800 Rhododendron simsii
Rhsim11G0179100 Rhododendron simsii
Sabra04G0105000 Salix brachista
Sabra08G0013300 Salix brachista
Sabra09G0091100 Salix brachista
Sabra10G0187400 Salix brachista
SalBow3G0083 Salvia bowleyana
SalBow6G6655 Salvia bowleyana
Sc06g0008790 Simmondsia chinensis
Sc12g0004550 Simmondsia chinensis
Sc21g0007060 Simmondsia chinensis
Sed0002170 Sechium edule
Sed0009519 Sechium edule
Sed0022624 Sechium edule
Sed0023025 Sechium edule
SGA_v2.0_scaffold32G13179 Striga asiatica
SGA_v2.0_scaffold58G20513 Striga asiatica
SHI07943 Sapria himalayana
SMO137G0158 Selaginella moellendorffii
Solyc02g069850.3 Solanum lycopersicum
Sopen01g012450 Solanum pennellii
Sopen02g019010 Solanum pennellii
Sopen06g020450 Solanum pennellii
Sopen07g023190 Solanum pennellii
Sopen09g020270 Solanum pennellii
Sopen10g017830 Solanum pennellii
Sopen10g023380 Solanum pennellii
Sp3g29590 Schrenkiella parvula
Sp4g00730 Schrenkiella parvula
Sp7g06330 Schrenkiella parvula
Sp7g32340 Schrenkiella parvula
TAR623G1223 Trochodendron aralioides
TAR633G1973 Trochodendron aralioides
TAR636G0754 Trochodendron aralioides
THA.LOC104804126 Tarenaya hassleriana
THA.LOC104807306 Tarenaya hassleriana
THA.LOC104807307 Tarenaya hassleriana
THA.LOC104807742 Tarenaya hassleriana
THA.LOC104819614 Tarenaya hassleriana
THA.LOC104824817 Tarenaya hassleriana
Thecc.02G082500 Theobroma cacao
Thecc.09G281800 Theobroma cacao
Thhalv10023150m.g Eutrema salsugineum
Thhalv10026626m.g Eutrema salsugineum
Thhalv10026627m.g Eutrema salsugineum
Thhalv10028004m.g Eutrema salsugineum
TPR.G11069 Trifolium pratense
TPR.G32183 Trifolium pratense
TPR.G4486 Trifolium pratense
TWI31G0798 Tripterygium wilfordii
TWI75G1678 Tripterygium wilfordii
TWI79G0237 Tripterygium wilfordii
unitig_26.g10251 Utricularia gibba
unitig_46.g18504 Utricularia gibba
unitig_749.g13160 Utricularia gibba
vmacro02089 Vaccinium macrocarpon
vmacro17478 Vaccinium macrocarpon
VMungo1127G0093 Vigna mungo
VMungo1309G2988 Vigna mungo
Zm00001eb039380 Zea mays
Zm00001eb151050 Zea mays
Zm00001eb369660 Zea mays

User provided reference genes

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