Gene: AT4G39200
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G39200
- Transcript Identifier AT4G39200.1
- Gene Type Coding gene
- Location Chr4 : 18257464-18258464 : positive
Gene Family Information
- ID HOM05D001795
- #Genes/#Species 364/98
- Phylogenetic origin
- ID ORTHO05D001741
- #Genes/#Species 361/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G39200.1
- uniprot Q9T029
Descriptions
- Description Ribosomal protein S25 family protein
- Computational description Ribosomal protein S25 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: Ribosomal protein S25 family protein (TAIR:AT2G21580.1); Has 691 Blast hits to 691 proteins in 239 species: Archae - 24; Bacteria - 0; Metazoa - 283; Fungi - 141; Plants - 145; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 1 |
| GO:0003735 | IDA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IBA | Gene Ontology | structural constituent of ribosome | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0022626 | IDA | GOA Database | cytosolic ribosome | |
| GO:0022626 | HDA | Gene Ontology | cytosolic ribosome | 3 |
| GO:0022627 | IDA | GOA Database | cytosolic small ribosomal subunit | |
| GO:0022627 | HDA IBA | Gene Ontology | cytosolic small ribosomal subunit | 2 4 |
| GO:0005794 | RCA | Gene Ontology | Golgi apparatus | 5 |
| GO:0005886 | HDA | Gene Ontology | plasma membrane | 6 |
| GO:0005840 | IEA | GOA Database | ribosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004977 | Ribosomal protein S25 |
| Mapman id | Description |
|---|---|
| 17.1.3.1.26 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS25 |