Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p19210 Brassica napus
A05p11030 Brassica napus
A06p12950 Brassica napus
A07p43780 Brassica napus
Aa31LG10G300 Aethionema arabicum
Aa31LG10G6720 Aethionema arabicum
Aa31LG7G1880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.153 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3945 Anthoceros agrestis
Actinidia07515 Actinidia chinensis
Actinidia12617 Actinidia chinensis
Actinidia32343 Actinidia chinensis
Actinidia39590 Actinidia chinensis
Ah.02g110910 Amaranthus hybridus
Ah.11g041640 Amaranthus hybridus
AL2G38910 Arabidopsis lyrata
AL4G30620 Arabidopsis lyrata
AL7G51010 Arabidopsis lyrata
Aqoxy1G01776 Aquilegia oxysepala
Aqoxy5G01321 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1MPM44 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2T8IP4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HABD5Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HG5XTQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HGL34I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XQ2AST Arachis hypogaea
AT1G17050 Arabidopsis thaliana
AT1G78510 Arabidopsis thaliana
AT2G34630 Arabidopsis thaliana
ATR1098G155 Amborella trichopoda
ATR1153G023 Amborella trichopoda
Atru.chr10.1117 Acer truncatum
Atru.chr10.1119 Acer truncatum
Atru.chr5.1010 Acer truncatum
AUR62002688 Chenopodium quinoa
AUR62019685 Chenopodium quinoa
AUR62030144 Chenopodium quinoa
AUR62039570 Chenopodium quinoa
AUR62041868 Chenopodium quinoa
AUR62043008 Chenopodium quinoa
BcaB02g06681 Brassica carinata
BcaB02g09520 Brassica carinata
BcaB03g16025 Brassica carinata
BcaB06g28788 Brassica carinata
BcaC01g05786 Brassica carinata
BcaC02g11539 Brassica carinata
BcaC05g25678 Brassica carinata
BcaC08g47421 Brassica carinata
BcaNung07261 Brassica carinata
BolC3t14624H Brassica oleracea
BolC4t27861H Brassica oleracea
BolC5t30243H Brassica oleracea
BolC6t40261H Brassica oleracea
BolC8t51959H Brassica oleracea
BraA03t11176Z Brassica rapa
BraA05t20048Z Brassica rapa
BraA06t24454Z Brassica rapa
BraA07t31886Z Brassica rapa
C03p22410 Brassica napus
C04p14150 Brassica napus
C05p15370 Brassica napus
C06p52420 Brassica napus
C08p44110 Brassica napus
CAN.G1226.43 Capsicum annuum
CAN.G375.68 Capsicum annuum
CAN.G633.1 Capsicum annuum
CANSAT35G1643 Cannabis sativa
CANSAT56G3507 Cannabis sativa
CARHR017580 Cardamine hirsuta
CARHR072000 Cardamine hirsuta
CARHR103440 Cardamine hirsuta
CARHR107750 Cardamine hirsuta
CARHR128730 Cardamine hirsuta
CARHR184270 Cardamine hirsuta
Carub.0001s1677 Capsella rubella
Carub.0002s2536 Capsella rubella
Carub.0004s1632 Capsella rubella
Ca_03415_v3 Cicer arietinum L.
Ca_22120_v3 Cicer arietinum L.
Ca_24734_v3 Cicer arietinum L.
Ca_29740_v3 Cicer arietinum L.
CBR_g22317 Chara braunii
CBR_g47123 Chara braunii
Cc05_g10510 Coffea canephora
Cc09_g03060 Coffea canephora
CDE02G0912 Ceratophyllum demersum
CDE05G2585 Ceratophyllum demersum
CDE09G0513 Ceratophyllum demersum
CDE11G1008 Ceratophyllum demersum
Cfa019489 Carpinus fangiana
Cfa025068 Carpinus fangiana
Cfa025200 Carpinus fangiana
Ciclev10015336m.g Citrus clementina
Ciclev10015559m.g Citrus clementina
Ciclev10020312m.g Citrus clementina
CiPaw.09G120000 Carya illinoinensis
CiPaw.10G088900 Carya illinoinensis
CiPaw.12G046600 Carya illinoinensis
ClCG01G024860 Citrullus lanatus
ClCG07G010380 Citrullus lanatus
COL.COLO4_17445 Corchorus olitorius
COL.COLO4_19227 Corchorus olitorius
COL.COLO4_31013 Corchorus olitorius
COL.COLO4_31015 Corchorus olitorius
Cpa.g.c47384 Carica papaya
Cpa.g.sc1272.2 Carica papaya
Cpa.g.sc17.47 Carica papaya
Cre12.g511700 Chlamydomonas reinhardtii
Cre13.g565650 Chlamydomonas reinhardtii
CsaV3_4G007960 Cucumis sativus L.
CsaV3_6G051980 Cucumis sativus L.
CSS0015991 Camellia sinensis var. sinensis
CSS0017352 Camellia sinensis var. sinensis
CSS0019388 Camellia sinensis var. sinensis
CSS0031554 Camellia sinensis var. sinensis
CSS0035593 Camellia sinensis var. sinensis
DCAR_005501 Daucus carota
DCAR_017581 Daucus carota
DCAR_019378 Daucus carota
DCAR_019630 Daucus carota
Dinv13333 Davidia involucrata
Dinv13346 Davidia involucrata
Dinv21526 Davidia involucrata
Dinv26692 Davidia involucrata
Duzib168G0633 Durio zibethinus
Duzib187G0679 Durio zibethinus
Duzib192G0405 Durio zibethinus
Duzib192G1020 Durio zibethinus
Duzib235G0792 Durio zibethinus
ECA234G2248 Erigeron canadensis
ECA240G4835 Erigeron canadensis
EL10Ac1g00430 Beta vulgaris
EL10Ac4g08456 Beta vulgaris
Eucgr.E02449 Eucalyptus grandis
Eucgr.E02451 Eucalyptus grandis
Eucgr.F03219 Eucalyptus grandis
Eucgr.L03208 Eucalyptus grandis
FAN11G0153 Fragaria x ananassa
FAN11G3589 Fragaria x ananassa
FAN16G0271 Fragaria x ananassa
FAN16G1751 Fragaria x ananassa
FAN21G3597 Fragaria x ananassa
FAN25G1074 Fragaria x ananassa
FAN25G2993 Fragaria x ananassa
FAN25G3064 Fragaria x ananassa
FvH4_3g05080 Fragaria vesca
FvH4_3g17330 Fragaria vesca
Glyma.05G100400 Glycine max
Glyma.11G151600 Glycine max
Glyma.13G262200 Glycine max
Glyma.15G243100 Glycine max
Glyma.17G166000 Glycine max
Gohir.A07G106000 Gossypium hirsutum
Gohir.A10G043800 Gossypium hirsutum
Gohir.A13G151300 Gossypium hirsutum
Gohir.A13G180700 Gossypium hirsutum
Gohir.D06G203750 Gossypium hirsutum
Gohir.D07G109900 Gossypium hirsutum
Gohir.D09G067700 Gossypium hirsutum
Gohir.D10G045000 Gossypium hirsutum
Gohir.D13G155500 Gossypium hirsutum
Gorai.001G118100 Gossypium raimondii
Gorai.006G082100 Gossypium raimondii
Gorai.010G237700 Gossypium raimondii
Gorai.011G047900 Gossypium raimondii
Gorai.011G147200 Gossypium raimondii
Gorai.013G176100 Gossypium raimondii
GSVIVG01000316001 Vitis vinifera
GSVIVG01005681001 Vitis vinifera
GSVIVG01014066001 Vitis vinifera
GSVIVG01019299001 Vitis vinifera
GSVIVG01037302001 Vitis vinifera
HanXRQChr02g0047111 Helianthus annuus
HanXRQChr03g0064741 Helianthus annuus
HanXRQChr10g0305631 Helianthus annuus
HanXRQChr12g0373361 Helianthus annuus
Haze_05658 Corylus avellana
Haze_05666 Corylus avellana
Haze_05672 Corylus avellana
Haze_08466 Corylus avellana
Haze_27152 Corylus avellana
Hma1.2p1_0713F.1_g207770 Hydrangea macrophylla
HPP92_010049 Vanilla planifolia
HPP92_026527 Vanilla planifolia
HPP92_026554 Vanilla planifolia
Hund10378 Selenicereus undatus
Hund10801 Selenicereus undatus
Hund10802 Selenicereus undatus
Hund17741 Selenicereus undatus
Lalb_Chr01g0016221 Lupinus albus
Lalb_Chr05g0226141 Lupinus albus
Lalb_Chr09g0333981 Lupinus albus
Lalb_Chr16g0388861 Lupinus albus
Lalb_Chr20g0109041 Lupinus albus
Lj1A821G46 Lonicera japonica
Lj1A821T47 Lonicera japonica
Lj1A821T48 Lonicera japonica
Lj2g0024621 Lotus japonicus
Lj3g0019503 Lotus japonicus
Lj4g0014792 Lotus japonicus
Lj7A455G26 Lonicera japonica
Lj8A144T69 Lonicera japonica
Lj9A714T21 Lonicera japonica
Lsat_1_v5_gn_7_49040 Lactuca sativa
Manes.03G083900 Manihot esculenta
Manes.15G100400 Manihot esculenta
Mapoly0043s0003 Marchantia polymorpha
Mapoly0058s0036 Marchantia polymorpha
MBI10_g03528_MAGBIO Magnolia biondii
MBI18_g11223_MAGBIO Magnolia biondii
MCO03G218 Micromonas commoda
MCO05G629 Micromonas commoda
MD03G1252200 Malus domestica
MD05G1280000 Malus domestica
MD05G1280200 Malus domestica
MD10G1258500 Malus domestica
MD11G1273800 Malus domestica
Medtr2g072470 Medicago truncatula
Medtr4g095055 Medicago truncatula
MELO3C007109.2 Cucumis melo
MELO3C016140.2 Cucumis melo
Migut.G00061 Erythranthe guttata
Migut.H02035 Erythranthe guttata
Migut.M00682 Erythranthe guttata
Migut.M00683 Erythranthe guttata
MSTRG.14259 Avicennia marina
MSTRG.14994 Avicennia marina
MSTRG.16263 Avicennia marina
MSTRG.6698 Avicennia marina
MSTRG.7509 Avicennia marina
Nitab4.5_0000315g0070 Nicotiana tabacum
Nitab4.5_0001140g0030 Nicotiana tabacum
Nitab4.5_0002071g0040 Nicotiana tabacum
Nitab4.5_0007036g0010 Nicotiana tabacum
Nn3g20339 Nelumbo nucifera
Nn3g20342 Nelumbo nucifera
Nn3g20662 Nelumbo nucifera
Nn4g26511 Nelumbo nucifera
Oeu025324.1 Olea europaea
Oeu030960.2 Olea europaea
Oeu032719.1 Olea europaea
Oeu035786.1 Olea europaea
Oeu050685.1 Olea europaea
Os05g0582300 Oryza sativa ssp. japonica
Os06g0678200 Oryza sativa ssp. japonica
Os08g0193100 Oryza sativa ssp. japonica
Os12g0271700 Oryza sativa ssp. japonica
Peaxi162Scf00045g02426 Petunia axillaris
Peaxi162Scf00111g01144 Petunia axillaris
PGR004G1548 Punica granatum
PGR031G0641 Punica granatum
PGR031G0881 Punica granatum
PGSC0003DMG400007081 Solanum tuberosum
Phvul.002G108500 Phaseolus vulgaris
Phvul.003G239100 Phaseolus vulgaris
Phvul.005G064200 Phaseolus vulgaris
Potri.001G380500 Populus trichocarpa
Potri.006G135300 Populus trichocarpa
Potri.010G138800 Populus trichocarpa
Potri.011G099500 Populus trichocarpa
Potri.011G101200 Populus trichocarpa
Potri.011G101301 Populus trichocarpa
Pp3c16_16550 Physcomitrium patens
Pp3c27_1880 Physcomitrium patens
Pp3c3_31610 Physcomitrium patens
Pp3c8_7380 Physcomitrium patens
PRCOL_00003890 Prasinoderma coloniale
PRCOL_00004938 Prasinoderma coloniale
Prupe.4G085300 Prunus persica
Prupe.4G153300 Prunus persica
Psat1g006600 Pisum sativum
Psat4g084000 Pisum sativum
PSO063G0049 Papaver somniferum
PSO063G4095 Papaver somniferum
PSO063G5674 Papaver somniferum
PSO170G1730 Papaver somniferum
PSO541G0989 Papaver somniferum
PSO541G2557 Papaver somniferum
PSO675G4072 Papaver somniferum
PSO675G5815 Papaver somniferum
PSO675G8508 Papaver somniferum
PSO724G0221 Papaver somniferum
QL05p055167 Quercus lobata
QL08p027904 Quercus lobata
RcHm_v2.0_Chr5g0014811 Rosa chinensis
RcHm_v2.0_Chr5g0014881 Rosa chinensis
RcHm_v2.0_Chr5g0014891 Rosa chinensis
RcHm_v2.0_Chr5g0028851 Rosa chinensis
Rhsim02G0159400 Rhododendron simsii
Rhsim02G0159500 Rhododendron simsii
Rhsim05G0190400 Rhododendron simsii
Rhsim06G0187500 Rhododendron simsii
Rhsim07G0216400 Rhododendron simsii
Rhsim07G0216500 Rhododendron simsii
Sabra06G0106100 Salix brachista
Sabra10G0107100 Salix brachista
Sabra16G0250700 Salix brachista
SalBow7G0098 Salvia bowleyana
SalBow7G0347 Salvia bowleyana
SalBow8G0683 Salvia bowleyana
Sc03g0010800 Simmondsia chinensis
Sc19g0006420 Simmondsia chinensis
Sc25g0002910 Simmondsia chinensis
Sed0012054 Sechium edule
Sed0013121 Sechium edule
Sed0015613 Sechium edule
Sed0021402 Sechium edule
SEGI_00831 Sequoiadendron giganteum
SEGI_01529 Sequoiadendron giganteum
SEGI_04874 Sequoiadendron giganteum
SEGI_06571 Sequoiadendron giganteum
SEGI_22965 Sequoiadendron giganteum
SEGI_39327 Sequoiadendron giganteum
SGA_v2.0_scaffold130G34245 Striga asiatica
SGA_v2.0_scaffold223G42822 Striga asiatica
SGA_v2.0_scaffold4G02146 Striga asiatica
SHI24857 Sapria himalayana
SHI24858 Sapria himalayana
SMO141G0186 Selaginella moellendorffii
SMO201G0139 Selaginella moellendorffii
Solyc07g061990.3 Solanum lycopersicum
Solyc08g023470.3 Solanum lycopersicum
Sopen07g030260 Solanum pennellii
Sopen08g008630 Solanum pennellii
Sp1g15170 Schrenkiella parvula
Sp4g16900 Schrenkiella parvula
Sp5g33600 Schrenkiella parvula
TAR624G0293 Trochodendron aralioides
TAR624G0447 Trochodendron aralioides
TAR627G1108 Trochodendron aralioides
TAR629G1663 Trochodendron aralioides
THA.LOC104810419 Tarenaya hassleriana
THA.LOC104812299 Tarenaya hassleriana
THA.LOC104813301 Tarenaya hassleriana
THA.LOC104813987 Tarenaya hassleriana
THA.LOC104814312 Tarenaya hassleriana
THA.LOC104820661 Tarenaya hassleriana
THA.LOC104820662 Tarenaya hassleriana
THA.LOC104820663 Tarenaya hassleriana
THA.LOC104822586 Tarenaya hassleriana
Thecc.06G144700 Theobroma cacao
Thecc.06G144800 Theobroma cacao
Thecc.07G140500 Theobroma cacao
Thecc.09G296000 Theobroma cacao
Thhalv10007715m.g Eutrema salsugineum
Thhalv10016708m.g Eutrema salsugineum
Thhalv10018616m.g Eutrema salsugineum
TPR.G23860 Trifolium pratense
TPR.G6839 Trifolium pratense
TWI09G0900 Tripterygium wilfordii
TWI39G0829 Tripterygium wilfordii
TWI73G0250 Tripterygium wilfordii
unitig_26.g9767 Utricularia gibba
unitig_37.g12550 Utricularia gibba
unitig_46.g18306 Utricularia gibba
vmacro07928 Vaccinium macrocarpon
vmacro07929 Vaccinium macrocarpon
vmacro07930 Vaccinium macrocarpon
vmacro10964 Vaccinium macrocarpon
vmacro10965 Vaccinium macrocarpon
vmacro10966 Vaccinium macrocarpon
vmacro11993 Vaccinium macrocarpon
vmacro23234 Vaccinium macrocarpon
vmacro23235 Vaccinium macrocarpon
VMungo1080G1543 Vigna mungo
Zm00001eb004050 Zea mays
Zm00001eb224620 Zea mays
Zm00001eb224640 Zea mays
Zm00001eb297120 Zea mays
Zm00001eb299390 Zea mays

User provided reference genes

Program Settings