Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p34220 Brassica napus
A06p37280 Brassica napus
A09p05460 Brassica napus
Aa31LG11G9600 Aethionema arabicum
Aa31LG1G28900 Aethionema arabicum
Aa31LG5G16010 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.127 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.945 Anthoceros agrestis
Actinidia08300 Actinidia chinensis
Actinidia21037 Actinidia chinensis
Actinidia21223 Actinidia chinensis
Actinidia25810 Actinidia chinensis
Actinidia33281 Actinidia chinensis
Ah.04g161350 Amaranthus hybridus
Ah.06g189910 Amaranthus hybridus
Ah.06g189920 Amaranthus hybridus
Ah.08g213340 Amaranthus hybridus
AL3G16220 Arabidopsis lyrata
AL6G39090 Arabidopsis lyrata
Aqoxy2G02917 Aquilegia oxysepala
Aqoxy5G00781 Aquilegia oxysepala
Aqoxy7G00972 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1JEP19 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1UU3TQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3437EF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6XU4W8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.87QPVY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ANK4CW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D28YNW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F95CHY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G8YEBA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HLZ67J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KFAN20 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MVE003 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MW0P8M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UB6XNG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VJFV1A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZS3YFB Arachis hypogaea
AT2G47570 Arabidopsis thaliana
AT3G05590 Arabidopsis thaliana
AT5G27850 Arabidopsis thaliana
ATR0099G030 Amborella trichopoda
ATR0150G015 Amborella trichopoda
ATR0308G004 Amborella trichopoda
Atru.chr2.102 Acer truncatum
Atru.chr5.1124 Acer truncatum
AUR62000739 Chenopodium quinoa
AUR62005225 Chenopodium quinoa
AUR62008685 Chenopodium quinoa
AUR62025559 Chenopodium quinoa
AUR62044270 Chenopodium quinoa
BcaB04g19255 Brassica carinata
BcaB04g19690 Brassica carinata
BcaB04g21437 Brassica carinata
BcaB07g34206 Brassica carinata
BcaC03g17810 Brassica carinata
BcaC04g23646 Brassica carinata
BcaC05g30106 Brassica carinata
BcaNung04746 Brassica carinata
BolC1t02275H Brassica oleracea
BolC1t05683H Brassica oleracea
BolC2t11898H Brassica oleracea
BolC3t16442H Brassica oleracea
BolC5t34819H Brassica oleracea
BolC7t44645H Brassica oleracea
BolC9t53518H Brassica oleracea
BolC9t55066H Brassica oleracea
BraA01t04483Z Brassica rapa
BraA02t08855Z Brassica rapa
BraA03t12596Z Brassica rapa
BraA05t22956Z Brassica rapa
BraA06t26651Z Brassica rapa
BraA09t36184Z Brassica rapa
C02p58340 Brassica napus
C03p41610 Brassica napus
C05p61590 Brassica napus
C05p61620 Brassica napus
C07p01390 Brassica napus
C07p41170 Brassica napus
C09p05920 Brassica napus
C09p21610 Brassica napus
CAN.G1273.46 Capsicum annuum
CAN.G472.18 Capsicum annuum
CANSAT21G0140 Cannabis sativa
CANSAT54G0585 Cannabis sativa
CARHR080020 Cardamine hirsuta
CARHR186330 Cardamine hirsuta
Carub.0003s0490 Capsella rubella
Carub.0006s2473 Capsella rubella
Ca_09181_v3 Cicer arietinum L.
Ca_09346_v3 Cicer arietinum L.
Ca_10144_v3 Cicer arietinum L.
Ca_10145_v3 Cicer arietinum L.
Ca_30606_v3 Cicer arietinum L.
CBR_g36905 Chara braunii
CBR_g50118 Chara braunii
Cc00_g35440 Coffea canephora
Cc01_g21010 Coffea canephora
Cc02_g31450 Coffea canephora
Cc03_g01600 Coffea canephora
Cc08_g05830 Coffea canephora
Cc09_g05040 Coffea canephora
Cc11_g01530 Coffea canephora
Cc11_g05980 Coffea canephora
CDE01G0698 Ceratophyllum demersum
CDE05G2120 Ceratophyllum demersum
CDE11G0021 Ceratophyllum demersum
CDE12G0343 Ceratophyllum demersum
Cfa006652 Carpinus fangiana
Ciclev10002597m.g Citrus clementina
Ciclev10022435m.g Citrus clementina
CiPaw.07G023300 Carya illinoinensis
CiPaw.07G110700 Carya illinoinensis
CiPaw.08G160400 Carya illinoinensis
ClCG02G015260 Citrullus lanatus
ClCG03G017220 Citrullus lanatus
COL.COLO4_23326 Corchorus olitorius
Cpa.g.sc151.14 Carica papaya
Cpa.g.sc48.108 Carica papaya
Cre12.g512600 Chlamydomonas reinhardtii
CsaV3_1G038670 Cucumis sativus L.
CsaV3_2G006750 Cucumis sativus L.
CSS0005020 Camellia sinensis var. sinensis
CSS0039020 Camellia sinensis var. sinensis
DCAR_002849 Daucus carota
DCAR_012384 Daucus carota
DCAR_018325 Daucus carota
Dinv19677 Davidia involucrata
Dinv30835 Davidia involucrata
Dinv40357 Davidia involucrata
Dinv44354 Davidia involucrata
Duzib106G1643 Durio zibethinus
Duzib128G0711 Durio zibethinus
Duzib138G0259 Durio zibethinus
Duzib177G0289 Durio zibethinus
ECA236G0924 Erigeron canadensis
ECA248G0417 Erigeron canadensis
EL10Ac4g09896 Beta vulgaris
EL10Ac7g17537 Beta vulgaris
Eucgr.B01908 Eucalyptus grandis
Eucgr.H04551 Eucalyptus grandis
FAN15G0984 Fragaria x ananassa
FAN15G1477 Fragaria x ananassa
FAN15G2633 Fragaria x ananassa
FAN20G2234 Fragaria x ananassa
FAN24G1494 Fragaria x ananassa
FAN27G2392 Fragaria x ananassa
FvH4_2g25920 Fragaria vesca
Glyma.03G215300 Glycine max
Glyma.03G234600 Glycine max
Glyma.10G150800 Glycine max
Glyma.19G211800 Glycine max
Glyma.19G232100 Glycine max
Glyma.20G237400 Glycine max
Gohir.A08G042200 Gossypium hirsutum
Gohir.A08G077100 Gossypium hirsutum
Gohir.A08G208200 Gossypium hirsutum
Gohir.A11G113800 Gossypium hirsutum
Gohir.A11G269300 Gossypium hirsutum
Gohir.A13G174820 Gossypium hirsutum
Gohir.D08G052000 Gossypium hirsutum
Gohir.D08G086700 Gossypium hirsutum
Gohir.D08G225000 Gossypium hirsutum
Gohir.D11G118800 Gossypium hirsutum
Gohir.D11G279500 Gossypium hirsutum
Gohir.D13G180650 Gossypium hirsutum
Gorai.004G052100 Gossypium raimondii
Gorai.004G091200 Gossypium raimondii
Gorai.004G239000 Gossypium raimondii
Gorai.007G127300 Gossypium raimondii
Gorai.007G301700 Gossypium raimondii
Gorai.013G206100 Gossypium raimondii
GSVIVG01010928001 Vitis vinifera
GSVIVG01023433001 Vitis vinifera
GSVIVG01028036001 Vitis vinifera
GSVIVG01031168001 Vitis vinifera
GSVIVG01035120001 Vitis vinifera
GSVIVG01037882001 Vitis vinifera
HanXRQChr01g0001041 Helianthus annuus
HanXRQChr04g0105471 Helianthus annuus
HanXRQChr04g0114801 Helianthus annuus
HanXRQChr06g0164551 Helianthus annuus
Haze_04956 Corylus avellana
Haze_13327 Corylus avellana
Hma1.2p1_0494F.1_g165330 Hydrangea macrophylla
Hma1.2p1_0804F.1_g221020 Hydrangea macrophylla
HPP92_001316 Vanilla planifolia
Hund05437 Selenicereus undatus
Hund07109 Selenicereus undatus
Hund11153 Selenicereus undatus
Hund18180 Selenicereus undatus
Lalb_Chr02g0148051 Lupinus albus
Lalb_Chr04g0260641 Lupinus albus
Lalb_Chr06g0167741 Lupinus albus
Lalb_Chr15g0077431 Lupinus albus
Lalb_Chr21g0310541 Lupinus albus
Lj1A23T84 Lonicera japonica
Lj1g0008033 Lotus japonicus
Lj1g0008782 Lotus japonicus
Lj2A197T64 Lonicera japonica
Lj5g0002946 Lotus japonicus
Lj9A185T10 Lonicera japonica
Lj9A190T30 Lonicera japonica
Lsat_1_v5_gn_5_190780 Lactuca sativa
Lsat_1_v5_gn_8_163980 Lactuca sativa
Lsat_1_v5_gn_9_5540 Lactuca sativa
Manes.01G001151 Manihot esculenta
Manes.01G221200 Manihot esculenta
Manes.08G115900 Manihot esculenta
Manes.09G172100 Manihot esculenta
Mapoly0118s0037 Marchantia polymorpha
MBI19_g30022_MAGBIO Magnolia biondii
MBI19_g30023_MAGBIO Magnolia biondii
MBI19_g32856_MAGBIO Magnolia biondii
MBI19_g34791_MAGBIO Magnolia biondii
MBI19_g36235_MAGBIO Magnolia biondii
MCO10G300 Micromonas commoda
MD01G1075100 Malus domestica
MD01G1075200 Malus domestica
MD03G1290600 Malus domestica
MD04G1198200 Malus domestica
MD05G1046400 Malus domestica
MD06G1052000 Malus domestica
MD06G1112500 Malus domestica
MD07G1120600 Malus domestica
MD11G1307900 Malus domestica
MD12G1103900 Malus domestica
MD12G1210800 Malus domestica
MD15G1175200 Malus domestica
MD15G1340500 Malus domestica
MD16G1022700 Malus domestica
MD16G1264700 Malus domestica
Medtr1g083460 Medicago truncatula
Medtr7g108805 Medicago truncatula
Medtr7g112880 Medicago truncatula
MELO3C004215.2 Cucumis melo
MELO3C015293.2 Cucumis melo
Migut.D00144 Erythranthe guttata
Migut.I00791 Erythranthe guttata
MSTRG.12609 Avicennia marina
MSTRG.18141 Avicennia marina
MSTRG.21642 Avicennia marina
Nitab4.5_0000116g0420 Nicotiana tabacum
Nitab4.5_0000176g0120 Nicotiana tabacum
Nitab4.5_0000602g0050 Nicotiana tabacum
Nitab4.5_0000726g0040 Nicotiana tabacum
Nitab4.5_0003102g0010 Nicotiana tabacum
Nitab4.5_0003113g0030 Nicotiana tabacum
Nitab4.5_0003497g0020 Nicotiana tabacum
Nitab4.5_0003925g0040 Nicotiana tabacum
Nitab4.5_0004739g0050 Nicotiana tabacum
Nitab4.5_0005924g0050 Nicotiana tabacum
Nn3g21532 Nelumbo nucifera
Nn4g23950 Nelumbo nucifera
Nn4g25766 Nelumbo nucifera
Nn5g28773 Nelumbo nucifera
Nn6g35712 Nelumbo nucifera
Oeu011463.1 Olea europaea
Oeu017786.1 Olea europaea
Oeu020534.2 Olea europaea
Oeu034279.1 Olea europaea
Oeu034915.1 Olea europaea
Oeu046671.2 Olea europaea
Oeu048766.1 Olea europaea
Oeu058903.1 Olea europaea
Os03g0341100 Oryza sativa ssp. japonica
Os05g0155100 Oryza sativa ssp. japonica
Os07g0674700 Oryza sativa ssp. japonica
Peaxi162Scf00001g40023 Petunia axillaris
Peaxi162Scf00037g01420 Petunia axillaris
Peaxi162Scf00071g00532 Petunia axillaris
Peaxi162Scf00298g00072 Petunia axillaris
Peaxi162Scf00340g00088 Petunia axillaris
Peaxi162Scf00872g00036 Petunia axillaris
PGR003G0006 Punica granatum
PGR031G2564 Punica granatum
PGR044G0020 Punica granatum
PGR083G1504 Punica granatum
PGSC0003DMG400024723 Solanum tuberosum
PGSC0003DMG400031789 Solanum tuberosum
Phvul.001G208200 Phaseolus vulgaris
Phvul.006G088800 Phaseolus vulgaris
Phvul.007G100200 Phaseolus vulgaris
Phvul.007G197900 Phaseolus vulgaris
Potri.002G202800 Populus trichocarpa
Potri.005G023500 Populus trichocarpa
Potri.005G023700 Populus trichocarpa
Potri.013G013600 Populus trichocarpa
Potri.014G127300 Populus trichocarpa
Pp3c1_3480 Physcomitrium patens
Pp3c1_5330 Physcomitrium patens
Pp3c2_32510 Physcomitrium patens
Pp3c2_34080 Physcomitrium patens
Pp3c7_22030 Physcomitrium patens
PRCOL_00003484 Prasinoderma coloniale
Prupe.6G034300 Prunus persica
Prupe.6G318700 Prunus persica
Prupe.8G263600 Prunus persica
Psat0s1175g0040 Pisum sativum
Psat3g011640 Pisum sativum
Psat3g022400 Pisum sativum
Psat7g012960 Pisum sativum
PSO170G1652 Papaver somniferum
PSO210G1475 Papaver somniferum
PSO407G0321 Papaver somniferum
PSO832G0917 Papaver somniferum
QL03p019615 Quercus lobata
QL12p028237 Quercus lobata
RcHm_v2.0_Chr6g0294241 Rosa chinensis
Rhsim01G0286600 Rhododendron simsii
Rhsim13G0009100 Rhododendron simsii
Sabra02G0156400 Salix brachista
Sabra05G0029200 Salix brachista
Sabra13G0012200 Salix brachista
Sabra14G0094700 Salix brachista
SalBow2G1561 Salvia bowleyana
SalBow6G0207 Salvia bowleyana
SalBow7G3436 Salvia bowleyana
Sc05g0003700 Simmondsia chinensis
Sc24g0003750 Simmondsia chinensis
Sed0003508 Sechium edule
Sed0015327 Sechium edule
Sed0027948 Sechium edule
SEGI_09211 Sequoiadendron giganteum
SGA_v2.0_scaffold198G41136 Striga asiatica
SGA_v2.0_scaffold199G41195 Striga asiatica
SGA_v2.0_scaffold1G00356 Striga asiatica
SGA_v2.0_scaffold2G01387 Striga asiatica
SGA_v2.0_scaffold36G14332 Striga asiatica
SGA_v2.0_scaffold375G50247 Striga asiatica
SMO174G0064 Selaginella moellendorffii
Solyc01g099900.4 Solanum lycopersicum
Solyc09g025200.2 Solanum lycopersicum
Solyc09g075290.3 Solanum lycopersicum
Sopen01g043420 Solanum pennellii
Sopen09g028320 Solanum pennellii
Sopen09g030080 Solanum pennellii
Sp2g20970 Schrenkiella parvula
Sp3g04470 Schrenkiella parvula
TAR362G0149 Trochodendron aralioides
TAR365G0862 Trochodendron aralioides
TAR636G2307 Trochodendron aralioides
THA.LOC104802178 Tarenaya hassleriana
THA.LOC104802791 Tarenaya hassleriana
THA.LOC104805895 Tarenaya hassleriana
THA.LOC104817484 Tarenaya hassleriana
THA.LOC104818728 Tarenaya hassleriana
THA.LOC104821729 Tarenaya hassleriana
THA.LOC104827664 Tarenaya hassleriana
THA.LOC104827665 Tarenaya hassleriana
Thecc.01G303200 Theobroma cacao
Thecc.05G315400 Theobroma cacao
Thhalv10004865m.g Eutrema salsugineum
Thhalv10009910m.g Eutrema salsugineum
Thhalv10021598m.g Eutrema salsugineum
Thhalv10023847m.g Eutrema salsugineum
Thhalv10028278m.g Eutrema salsugineum
TPR.G1658 Trifolium pratense
TPR.G17726 Trifolium pratense
TPR.G9613 Trifolium pratense
TWI12G1014 Tripterygium wilfordii
TWI14G1172 Tripterygium wilfordii
TWI23G0834 Tripterygium wilfordii
TWI59G0455 Tripterygium wilfordii
unitig_0.g672 Utricularia gibba
unitig_22.g5239 Utricularia gibba
unitig_8.g3704 Utricularia gibba
vmacro02439 Vaccinium macrocarpon
vmacro15148 Vaccinium macrocarpon
VMungo0540G1580 Vigna mungo
VMungo0720G0447 Vigna mungo
VMungo1383G1396 Vigna mungo
Zm00001eb282790 Zea mays
Zm00001eb330480 Zea mays
Zm00001eb346100 Zea mays

User provided reference genes

Program Settings