Gene: AT3G05590
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G05590
- Transcript Identifier AT3G05590.1
- Gene Type Coding gene
- Location Chr3 : 1621511-1622775 : positive
Gene Family Information
- ID HOM05D001727
- #Genes/#Species 375/99
- Phylogenetic origin
- ID ORTHO05D001758
- #Genes/#Species 359/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G05590.1
- symbol RPL18
- uniprot P42791
Descriptions
- Description ribosomal protein L18
- Computational description ribosomal protein L18 (RPL18); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole, large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G27850.1); Has 786 Blast hits to 785 proteins in 305 species: Archae - 30; Bacteria - 0; Metazoa - 334; Fungi - 154; Plants - 130; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | TAS, IEA | Gene Ontology | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IDA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IBA TAS, IEA | Gene Ontology | structural constituent of ribosome | 1 |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003723 | IBA | Gene Ontology | RNA binding | 1 |
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0022625 | IDA | GOA Database | cytosolic large ribosomal subunit | |
| GO:0022625 | HDA IBA | Gene Ontology | cytosolic large ribosomal subunit | 1 4 |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT5G27850 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT5G27850 |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0009507 | IDA | GOA Database | chloroplast | |
| GO:0009507 | HDA | Gene Ontology | chloroplast | 5 |
| GO:0005886 | IDA | GOA Database | plasma membrane | |
| GO:0005773 | IDA | GOA Database | vacuole | |
| GO:0005773 | HDA | Gene Ontology | vacuole | 6 |
| GO:0005774 | IDA | GOA Database | vacuolar membrane | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 7 |
| GO:0005794 | RCA | Gene Ontology | Golgi apparatus | 8 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 9 |
| GO:0015934 | IDA TAS | Gene Ontology | large ribosomal subunit | 10 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.2.1.18 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL18 |