Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p66640 Brassica napus
A05p16360 Brassica napus
A09p50130 Brassica napus
Aa31LG10G12100 Aethionema arabicum
Aa31LG1G3580 Aethionema arabicum
Aa31LG1G3590 Aethionema arabicum
Aa31LG2G11500 Aethionema arabicum
Aa31LG3G8060 Aethionema arabicum
Aa31LG9G17900 Aethionema arabicum
Aa31sc2053G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4940 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.638 Anthoceros agrestis
Actinidia31345 Actinidia chinensis
Ah.06g188840 Amaranthus hybridus
AL1G65980 Arabidopsis lyrata
AL5G38680 Arabidopsis lyrata
AL7G45120 Arabidopsis lyrata
Aqoxy144s001 Aquilegia oxysepala
Aqoxy1G00753 Aquilegia oxysepala
Aqoxy2G00268 Aquilegia oxysepala
Aqoxy2G04124 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.322B5E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5A5R3G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.68Y0RY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C7S1DP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LUDT77 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MWR02K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SK6M7U Arachis hypogaea
AT1G56350 Arabidopsis thaliana
AT3G57190 Arabidopsis thaliana
AT5G36170 Arabidopsis thaliana
ATR0706G206 Amborella trichopoda
ATR0721G134 Amborella trichopoda
ATR0743G112 Amborella trichopoda
Atru.BG.131.p Acer truncatum
Atru.chr1.1244 Acer truncatum
Atru.chr1.1245 Acer truncatum
Atru.chr1.1277 Acer truncatum
Atru.chr12.1702 Acer truncatum
AUR62000284 Chenopodium quinoa
AUR62000671 Chenopodium quinoa
AUR62005282 Chenopodium quinoa
AUR62006632 Chenopodium quinoa
AUR62025763 Chenopodium quinoa
AUR62030395 Chenopodium quinoa
AUR62041193 Chenopodium quinoa
BcaB02g08040 Brassica carinata
BcaC02g10734 Brassica carinata
BcaC06g31771 Brassica carinata
BcaC07g40066 Brassica carinata
BcaC08g44326 Brassica carinata
BcaNung06571 Brassica carinata
BolC4t24075H Brassica oleracea
BolC6t36945H Brassica oleracea
BraA03t15722Z Brassica rapa
BraA05t20544Z Brassica rapa
BraA09t40464Z Brassica rapa
C04p27150 Brassica napus
C06p17510 Brassica napus
C06p24350 Brassica napus
C08p32500 Brassica napus
CAN.G1656.9 Capsicum annuum
CAN.G1715.4 Capsicum annuum
CAN.G4.22 Capsicum annuum
CANSAT54G0429 Cannabis sativa
CANSAT54G1215 Cannabis sativa
CANSAT80G1353 Cannabis sativa
CANSAT80G2358 Cannabis sativa
CARHR055350 Cardamine hirsuta
CARHR167390 Cardamine hirsuta
CARHR216570 Cardamine hirsuta
Carub.0002s0779 Capsella rubella
Carub.0005s2401 Capsella rubella
Carub.0007s3185 Capsella rubella
Ca_08007_v3 Cicer arietinum L.
Ca_09300_v3 Cicer arietinum L.
Ca_11913_v3 Cicer arietinum L.
Ca_30977_v3 Cicer arietinum L.
CBR_g54104 Chara braunii
Cc02_g34960 Coffea canephora
Cc06_g18400 Coffea canephora
Cc09_g03960 Coffea canephora
CDE01G0522 Ceratophyllum demersum
CDE07G1999 Ceratophyllum demersum
CDE08G1323 Ceratophyllum demersum
CDE09G0031 Ceratophyllum demersum
Cfa006240 Carpinus fangiana
Cfa006698 Carpinus fangiana
Cfa016750 Carpinus fangiana
Ciclev10000955m.g Citrus clementina
Ciclev10005039m.g Citrus clementina
Ciclev10012132m.g Citrus clementina
CiPaw.07G029100 Carya illinoinensis
CiPaw.07G082900 Carya illinoinensis
CiPaw.09G042600 Carya illinoinensis
ClCG03G017680 Citrullus lanatus
ClCG05G013730 Citrullus lanatus
COL.COLO4_04155 Corchorus olitorius
COL.COLO4_21292 Corchorus olitorius
Cpa.g.sc120.14 Carica papaya
Cpa.g.sc123.43 Carica papaya
Cpa.g.sc48.155 Carica papaya
Cre01.g010864 Chlamydomonas reinhardtii
CsaV3_1G038310 Cucumis sativus L.
CsaV3_1G044280 Cucumis sativus L.
CSS0003470 Camellia sinensis var. sinensis
CSS0010651 Camellia sinensis var. sinensis
CSS0020791 Camellia sinensis var. sinensis
CSS0031282 Camellia sinensis var. sinensis
CSS0033803 Camellia sinensis var. sinensis
CSS0043011 Camellia sinensis var. sinensis
CSS0046412 Camellia sinensis var. sinensis
CSS0046553 Camellia sinensis var. sinensis
DCAR_013618 Daucus carota
DCAR_025276 Daucus carota
DCAR_030007 Daucus carota
Dinv18689 Davidia involucrata
Dinv21370 Davidia involucrata
Dinv24435 Davidia involucrata
Dinv30293 Davidia involucrata
Duzib093G1214 Durio zibethinus
Duzib106G1257 Durio zibethinus
Duzib150G1308 Durio zibethinus
Duzib177G0269 Durio zibethinus
Duzib177G0460 Durio zibethinus
ECA233G5271 Erigeron canadensis
ECA236G2262 Erigeron canadensis
ECA236G2794 Erigeron canadensis
EL10Ac3g07168 Beta vulgaris
EL10Ac4g09821 Beta vulgaris
EL10Ac4g10010 Beta vulgaris
Eucgr.B01462 Eucalyptus grandis
Eucgr.E02486 Eucalyptus grandis
Eucgr.F00951 Eucalyptus grandis
Eucgr.F02187 Eucalyptus grandis
Eucgr.F03826 Eucalyptus grandis
Eucgr.H03286 Eucalyptus grandis
Eucgr.H04520 Eucalyptus grandis
Eucgr.K01580 Eucalyptus grandis
FAN02G0822 Fragaria x ananassa
FAN02G2468 Fragaria x ananassa
FAN05G1868 Fragaria x ananassa
FAN07G0795 Fragaria x ananassa
FAN09G3274 Fragaria x ananassa
FAN12G1117 Fragaria x ananassa
FAN12G1718 Fragaria x ananassa
FAN12G2981 Fragaria x ananassa
FAN12G4107 Fragaria x ananassa
FAN14G3265 Fragaria x ananassa
FAN14G3268 Fragaria x ananassa
FAN14G4355 Fragaria x ananassa
FAN17G0860 Fragaria x ananassa
FAN22G1650 Fragaria x ananassa
FvH4_4g11990 Fragaria vesca
FvH4_4g12020 Fragaria vesca
FvH4_6g00190 Fragaria vesca
FvH4_6g07390 Fragaria vesca
Glyma.02G191600 Glycine max
Glyma.03G008400 Glycine max
Glyma.03G231500 Glycine max
Glyma.09G248300 Glycine max
Glyma.10G105300 Glycine max
Glyma.19G228600 Glycine max
Gohir.A08G206100 Gossypium hirsutum
Gohir.A08G227200 Gossypium hirsutum
Gohir.A13G010900 Gossypium hirsutum
Gohir.D08G222900 Gossypium hirsutum
Gohir.D08G247600 Gossypium hirsutum
Gohir.D13G011600 Gossypium hirsutum
Gorai.004G236800 Gossypium raimondii
Gorai.004G264100 Gossypium raimondii
Gorai.013G012700 Gossypium raimondii
GSVIVG01019055001 Vitis vinifera
GSVIVG01031232001 Vitis vinifera
GSVIVG01033556001 Vitis vinifera
HanXRQChr04g0096301 Helianthus annuus
HanXRQChr05g0157031 Helianthus annuus
HanXRQChr06g0176831 Helianthus annuus
HanXRQChr17g0541541 Helianthus annuus
Haze_04069 Corylus avellana
Haze_27410 Corylus avellana
Hma1.2p1_0008F-1.1_g005660 Hydrangea macrophylla
Hma1.2p1_0008F-1.1_g005670 Hydrangea macrophylla
Hma1.2p1_0056F.1_g031640 Hydrangea macrophylla
Hma1.2p1_0222F.1_g093440 Hydrangea macrophylla
Hma1.2p1_0831F.1_g225370 Hydrangea macrophylla
Hma1.2p1_0831F.1_g225380 Hydrangea macrophylla
HPP92_001435 Vanilla planifolia
HPP92_001437 Vanilla planifolia
HPP92_003581 Vanilla planifolia
HPP92_003744 Vanilla planifolia
HPP92_003762 Vanilla planifolia
Hund07142 Selenicereus undatus
Hund19122 Selenicereus undatus
Hund21839 Selenicereus undatus
Lalb_Chr18g0046081 Lupinus albus
Lalb_Chr19g0127621 Lupinus albus
Lalb_Chr21g0316621 Lupinus albus
Lj1A1122G39 Lonicera japonica
Lj1g0007632 Lotus japonicus
Lj1g0017266 Lotus japonicus
Lj3A233G8 Lonicera japonica
Lj4g0002014 Lotus japonicus
Lj5g0021823 Lotus japonicus
Lju926A9G33 Lonicera japonica
Lsat_1_v5_gn_5_6501 Lactuca sativa
Lsat_1_v5_gn_7_74521 Lactuca sativa
Lsat_1_v5_gn_8_2240 Lactuca sativa
Lsat_1_v5_gn_8_83140 Lactuca sativa
Manes.08G111800 Manihot esculenta
Manes.09G016400 Manihot esculenta
Manes.09G016710 Manihot esculenta
Manes.12G003100 Manihot esculenta
Mapoly0009s0190 Marchantia polymorpha
Mapoly0011s0200 Marchantia polymorpha
MBI18_g31674_MAGBIO Magnolia biondii
MBI19_g08305_MAGBIO Magnolia biondii
MCO09G220 Micromonas commoda
MD04G1193500 Malus domestica
MD04G1193600 Malus domestica
MD04G1193700 Malus domestica
MD04G1247400 Malus domestica
MD12G1206300 Malus domestica
MD12G1263000 Malus domestica
Medtr1g041890 Medicago truncatula
Medtr7g080430 Medicago truncatula
Medtr7g112100 Medicago truncatula
MELO3C010022.2 Cucumis melo
MELO3C015260.2 Cucumis melo
Migut.C00728 Erythranthe guttata
Migut.F01856 Erythranthe guttata
Migut.J01698 Erythranthe guttata
MSTRG.27943 Avicennia marina
MSTRG.6399 Avicennia marina
MSTRG.8200 Avicennia marina
Nitab4.5_0000368g0140 Nicotiana tabacum
Nitab4.5_0000562g0010 Nicotiana tabacum
Nitab4.5_0000677g0050 Nicotiana tabacum
Nitab4.5_0001449g0040 Nicotiana tabacum
Nitab4.5_0004873g0060 Nicotiana tabacum
Nitab4.5_0021834g0010 Nicotiana tabacum
Nitab4.5_0024954g0010 Nicotiana tabacum
Nn2g15055 Nelumbo nucifera
Nn3g21681 Nelumbo nucifera
Nn4g25606 Nelumbo nucifera
Nn4g25607 Nelumbo nucifera
Nn4g25608 Nelumbo nucifera
Nn7g37576 Nelumbo nucifera
Oeu000013.1 Olea europaea
Oeu010169.1 Olea europaea
Oeu021184.1 Olea europaea
Oeu023924.1 Olea europaea
Oeu026327.1 Olea europaea
Oeu038963.1 Olea europaea
Oeu039502.1 Olea europaea
Oeu043105.1 Olea europaea
Os03g0305700 Oryza sativa ssp. japonica
Os05g0375600 Oryza sativa ssp. japonica
Os07g0546600 Oryza sativa ssp. japonica
Peaxi162Scf00619g00046 Petunia axillaris
Peaxi162Scf00673g00320 Petunia axillaris
Peaxi162Scf01315g00113 Petunia axillaris
PGR031G0820 Punica granatum
PGR031G1216 Punica granatum
PGR142G0049 Punica granatum
PGSC0003DMG400029846 Solanum tuberosum
PGSC0003DMG401002803 Solanum tuberosum
Phvul.001G225200 Phaseolus vulgaris
Phvul.007G249100 Phaseolus vulgaris
Phvul.008G052200 Phaseolus vulgaris
Potri.006G045200 Populus trichocarpa
Potri.008G075800 Populus trichocarpa
Potri.010G181600 Populus trichocarpa
Potri.013G009200 Populus trichocarpa
Pp3c21_10940 Physcomitrium patens
Pp3c3_11640 Physcomitrium patens
PRCOL_00004465 Prasinoderma coloniale
Prupe.6G313600 Prunus persica
Prupe.6G363800 Prunus persica
Prupe.7G049700 Prunus persica
Psat0s1991g0160 Pisum sativum
Psat3g012840 Pisum sativum
Psat3g102320 Pisum sativum
PSO170G2861 Papaver somniferum
PSO210G6757 Papaver somniferum
PSO339G3968 Papaver somniferum
PSO357G0676 Papaver somniferum
PSO384G4779 Papaver somniferum
PSO832G2456 Papaver somniferum
QL01p048021 Quercus lobata
QL01p048042 Quercus lobata
QL03p013475 Quercus lobata
QL03p040031 Quercus lobata
RcHm_v2.0_Chr1g0343471 Rosa chinensis
RcHm_v2.0_Chr2g0168541 Rosa chinensis
RcHm_v2.0_Chr3g0447561 Rosa chinensis
RcHm_v2.0_Chr3g0456991 Rosa chinensis
RcHm_v2.0_Chr4g0409641 Rosa chinensis
RcHm_v2.0_Chr5g0045081 Rosa chinensis
RcHm_v2.0_Chr5g0071051 Rosa chinensis
RcHm_v2.0_Chr6g0273161 Rosa chinensis
RcHm_v2.0_Chr7g0240011 Rosa chinensis
Rhsim04G0108200 Rhododendron simsii
Rhsim09G0128900 Rhododendron simsii
Rhsim11G0094700 Rhododendron simsii
Sabra08G0056400 Salix brachista
Sabra13G0007800 Salix brachista
SalBow3G1034 Salvia bowleyana
SalBow5G0353 Salvia bowleyana
SalBow5G0603 Salvia bowleyana
SalBow5G2095 Salvia bowleyana
SalBow5G4231 Salvia bowleyana
SalBow5G4336 Salvia bowleyana
SalBow5G4778 Salvia bowleyana
SalBow5G5270 Salvia bowleyana
SalBow6G6011 Salvia bowleyana
Sc09g0002650 Simmondsia chinensis
Sc16g0010530 Simmondsia chinensis
Sc19g0008400 Simmondsia chinensis
Sed0013113 Sechium edule
Sed0020329 Sechium edule
SEGI_04522 Sequoiadendron giganteum
SEGI_05234 Sequoiadendron giganteum
SEGI_18756 Sequoiadendron giganteum
SEGI_22364 Sequoiadendron giganteum
SEGI_33328 Sequoiadendron giganteum
SEGI_34635 Sequoiadendron giganteum
SEGI_37907 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30346 Striga asiatica
SGA_v2.0_scaffold122G33194 Striga asiatica
SGA_v2.0_scaffold5G02885 Striga asiatica
SMO217G0019 Selaginella moellendorffii
SMO239G0109 Selaginella moellendorffii
SMO290G0017 Selaginella moellendorffii
SMO356G0043 Selaginella moellendorffii
SMO356G0207 Selaginella moellendorffii
SMO367G0410 Selaginella moellendorffii
Solyc01g100420.3 Solanum lycopersicum
Solyc04g025290.4 Solanum lycopersicum
Solyc10g079840.2 Solanum lycopersicum
Sopen01g043940 Solanum pennellii
Sopen04g011940 Solanum pennellii
Sopen10g030450 Solanum pennellii
Sp2g06480 Schrenkiella parvula
Sp5g05380 Schrenkiella parvula
Sp7g05990 Schrenkiella parvula
TAR362G0798 Trochodendron aralioides
TAR362G1091 Trochodendron aralioides
TAR636G0319 Trochodendron aralioides
THA.LOC104805706 Tarenaya hassleriana
THA.LOC104816887 Tarenaya hassleriana
THA.LOC104824425 Tarenaya hassleriana
Thecc.05G144700 Theobroma cacao
Thecc.05G187200 Theobroma cacao
Thecc.05G322100 Theobroma cacao
Thhalv10004205m.g Eutrema salsugineum
Thhalv10006006m.g Eutrema salsugineum
Thhalv10023424m.g Eutrema salsugineum
TPR.G1660 Trifolium pratense
TPR.G19649 Trifolium pratense
TPR.G32008 Trifolium pratense
TWI36G0167 Tripterygium wilfordii
TWI36G0981 Tripterygium wilfordii
TWI36G1697 Tripterygium wilfordii
TWI74G0460 Tripterygium wilfordii
unitig_52.g17413 Utricularia gibba
vmacro01558 Vaccinium macrocarpon
vmacro09041 Vaccinium macrocarpon
vmacro10415 Vaccinium macrocarpon
VMungo0720G0829 Vigna mungo
VMungo1383G0488 Vigna mungo
VMungo1383G1817 Vigna mungo
Zm00001eb056770 Zea mays
Zm00001eb074740 Zea mays
Zm00001eb104940 Zea mays
Zm00001eb115410 Zea mays
Zm00001eb123680 Zea mays
Zm00001eb192100 Zea mays
Zm00001eb237950 Zea mays
Zm00001eb251150 Zea mays
Zm00001eb257380 Zea mays
Zm00001eb264320 Zea mays
Zm00001eb264350 Zea mays
Zm00001eb286770 Zea mays
Zm00001eb323570 Zea mays
Zm00001eb345050 Zea mays

User provided reference genes

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