Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p42930 Brassica napus
A03p03970 Brassica napus
A06p30280 Brassica napus
A10p28160 Brassica napus
Aa31LG1G18170 Aethionema arabicum
Aa31LG1G18180 Aethionema arabicum
Aa31LG1G18190 Aethionema arabicum
Aa31LG1G18200 Aethionema arabicum
Aa31LG1G18210 Aethionema arabicum
Aa31LG1G18220 Aethionema arabicum
Aa31LG3G17970 Aethionema arabicum
Aa31LG5G3360 Aethionema arabicum
Aa31sc2459G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.45 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.450 Anthoceros agrestis
Actinidia04071 Actinidia chinensis
Actinidia04369 Actinidia chinensis
Actinidia06830 Actinidia chinensis
Actinidia09506 Actinidia chinensis
Ah.02g120760 Amaranthus hybridus
Ah.08g213730 Amaranthus hybridus
AL6G19280 Arabidopsis lyrata
AL8G16210 Arabidopsis lyrata
AL8G40810 Arabidopsis lyrata
Aqoxy4G00048 Aquilegia oxysepala
Aqoxy5G00085 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.C265D9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ER1LI4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L4URYE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T08E3F Arachis hypogaea
AT5G08560 Arabidopsis thaliana
AT5G43920 Arabidopsis thaliana
ATR0165G049 Amborella trichopoda
ATR0787G180 Amborella trichopoda
Atru.chr11.33 Acer truncatum
Atru.chr5.1951 Acer truncatum
Atru.chr6.2017 Acer truncatum
AUR62003525 Chenopodium quinoa
AUR62008828 Chenopodium quinoa
AUR62017760 Chenopodium quinoa
AUR62017839 Chenopodium quinoa
AUR62025412 Chenopodium quinoa
AUR62032893 Chenopodium quinoa
BcaB01g05584 Brassica carinata
BcaB02g09740 Brassica carinata
BcaB07g29698 Brassica carinata
BcaB07g29699 Brassica carinata
BcaB07g30991 Brassica carinata
BcaB08g37245 Brassica carinata
BcaC01g02634 Brassica carinata
BcaC03g18218 Brassica carinata
BolC2t09875H Brassica oleracea
BolC2t12359H Brassica oleracea
BolC2t12360H Brassica oleracea
BolC3t12975H Brassica oleracea
BolC3t18532H Brassica oleracea
BolC4t22699H Brassica oleracea
BolC4t22735H Brassica oleracea
BolC7t42147H Brassica oleracea
BolC9t59584H Brassica oleracea
BraA02t09215Z Brassica rapa
BraA03t09740Z Brassica rapa
BraA06t25977Z Brassica rapa
BraA10t44865Z Brassica rapa
C02p38570 Brassica napus
C02p62870 Brassica napus
C03p04440 Brassica napus
C03p62780 Brassica napus
C07p16490 Brassica napus
C09p68370 Brassica napus
CAN.G1664.7 Capsicum annuum
CAN.G260.7 Capsicum annuum
CAN.G60.13 Capsicum annuum
CANSAT01G0221 Cannabis sativa
CANSAT64G0881 Cannabis sativa
CANSAT78G2171 Cannabis sativa
CARHR179500 Cardamine hirsuta
CARHR204410 Cardamine hirsuta
CARHR214160 Cardamine hirsuta
CARHR262570 Cardamine hirsuta
CARHR277550 Cardamine hirsuta
CARHR277560 Cardamine hirsuta
CARHR277570 Cardamine hirsuta
CARHR277580 Cardamine hirsuta
Carub.0006s0752 Capsella rubella
Carub.0008s0496 Capsella rubella
Carub.0008s2443 Capsella rubella
Ca_06236_v3 Cicer arietinum L.
Ca_09635_v3 Cicer arietinum L.
Ca_13921_v3 Cicer arietinum L.
CBR_g8662 Chara braunii
Cc01_g17630 Coffea canephora
Cc05_g00850 Coffea canephora
CDE03G0215 Ceratophyllum demersum
CDE04G2430 Ceratophyllum demersum
CDE06G2108 Ceratophyllum demersum
CDE07G0619 Ceratophyllum demersum
CDE07G1418 Ceratophyllum demersum
CDE12G0605 Ceratophyllum demersum
Cfa002502 Carpinus fangiana
Cfa018669 Carpinus fangiana
Cfa023021 Carpinus fangiana
Cfa023985 Carpinus fangiana
Cfa025162 Carpinus fangiana
Ciclev10014731m.g Citrus clementina
Ciclev10019514m.g Citrus clementina
Ciclev10031058m.g Citrus clementina
CiPaw.03G272700 Carya illinoinensis
CiPaw.04G136300 Carya illinoinensis
CiPaw.04G136800 Carya illinoinensis
CiPaw.16G000500 Carya illinoinensis
ClCG07G001480 Citrullus lanatus
ClCG11G016590 Citrullus lanatus
COL.COLO4_08316 Corchorus olitorius
COL.COLO4_29887 Corchorus olitorius
COL.COLO4_33153 Corchorus olitorius
COL.COLO4_37667 Corchorus olitorius
Cpa.g.sc221.5 Carica papaya
Cpa.g.sc3050.1 Carica papaya
Cpa.g.sc87.62 Carica papaya
Cre03.g159350 Chlamydomonas reinhardtii
Cre08.g382515 Chlamydomonas reinhardtii
CsaV3_3G028500 Cucumis sativus L.
CsaV3_4G032060 Cucumis sativus L.
CsaV3_4G032080 Cucumis sativus L.
CSS0002043 Camellia sinensis var. sinensis
CSS0037837 Camellia sinensis var. sinensis
CSS0040123 Camellia sinensis var. sinensis
CSS0045960 Camellia sinensis var. sinensis
DCAR_012614 Daucus carota
DCAR_023497 Daucus carota
DCAR_026871 Daucus carota
DCAR_030291 Daucus carota
Dinv00957 Davidia involucrata
Dinv04150 Davidia involucrata
Dinv11944 Davidia involucrata
Dinv13261 Davidia involucrata
Dinv17656 Davidia involucrata
Dinv18278 Davidia involucrata
Dinv19257 Davidia involucrata
Duzib052G0966 Durio zibethinus
Duzib132G0499 Durio zibethinus
Duzib138G1480 Durio zibethinus
Duzib147G0143 Durio zibethinus
Duzib187G1035 Durio zibethinus
Duzib264G0527 Durio zibethinus
ECA234G4246 Erigeron canadensis
ECA246G2154 Erigeron canadensis
ECA247G1163 Erigeron canadensis
EL10Ac5g12250 Beta vulgaris
EL10Ac6g15355 Beta vulgaris
EL10Ac6g15356 Beta vulgaris
EL10Ac7g17725 Beta vulgaris
EL10Ac8g19024 Beta vulgaris
Eucgr.A02037 Eucalyptus grandis
Eucgr.H00847 Eucalyptus grandis
Eucgr.L01054 Eucalyptus grandis
FAN02G0823 Fragaria x ananassa
FAN05G5738 Fragaria x ananassa
FAN09G3671 Fragaria x ananassa
FAN14G1184 Fragaria x ananassa
FAN15G1803 Fragaria x ananassa
FAN24G0562 Fragaria x ananassa
FAN27G0589 Fragaria x ananassa
FvH4_2g20200 Fragaria vesca
FvH4_6g38890 Fragaria vesca
Glyma.02G282600 Glycine max
Glyma.03G169100 Glycine max
Glyma.08G304300 Glycine max
Glyma.14G031700 Glycine max
Glyma.18G114800 Glycine max
Glyma.19G170400 Glycine max
Gohir.A05G340650 Gossypium hirsutum
Gohir.A08G151400 Gossypium hirsutum
Gohir.A08G192200 Gossypium hirsutum
Gohir.A09G008000 Gossypium hirsutum
Gohir.A12G011100 Gossypium hirsutum
Gohir.A12G086100 Gossypium hirsutum
Gohir.D08G210200 Gossypium hirsutum
Gohir.D09G007400 Gossypium hirsutum
Gohir.D12G011500 Gossypium hirsutum
Gohir.D12G084800 Gossypium hirsutum
Gorai.004G222700 Gossypium raimondii
Gorai.006G008900 Gossypium raimondii
Gorai.008G011600 Gossypium raimondii
Gorai.008G095100 Gossypium raimondii
GSVIVG01020820001 Vitis vinifera
GSVIVG01028456001 Vitis vinifera
GSVIVG01034348001 Vitis vinifera
HanXRQChr01g0028831 Helianthus annuus
HanXRQChr02g0042801 Helianthus annuus
HanXRQChr10g0280271 Helianthus annuus
HanXRQChr14g0454321 Helianthus annuus
HanXRQChr17g0541441 Helianthus annuus
Haze_13610 Corylus avellana
Haze_17396 Corylus avellana
Haze_24746 Corylus avellana
Hma1.2p1_0123F.1_g058220 Hydrangea macrophylla
Hma1.2p1_0130F.1_g060530 Hydrangea macrophylla
Hma1.2p1_0326F.1_g126190 Hydrangea macrophylla
Hma1.2p1_0513F.1_g169660 Hydrangea macrophylla
HPP92_013911 Vanilla planifolia
HPP92_013921 Vanilla planifolia
HPP92_018668 Vanilla planifolia
HPP92_018686 Vanilla planifolia
HPP92_025563 Vanilla planifolia
HPP92_025564 Vanilla planifolia
Hund18325 Selenicereus undatus
Hund18326 Selenicereus undatus
Lalb_Chr02g0152801 Lupinus albus
Lalb_Chr04g0249001 Lupinus albus
Lalb_Chr06g0170781 Lupinus albus
Lalb_Chr10g0106491 Lupinus albus
Lalb_Chr17g0348131 Lupinus albus
Lj1A652T35 Lonicera japonica
Lj1A652T36 Lonicera japonica
Lj2A1141T59 Lonicera japonica
Lj3A843T76 Lonicera japonica
Lj5g0003800 Lotus japonicus
Lj6g0011817 Lotus japonicus
Lj8A98T43 Lonicera japonica
LjContig00049g0010351 Lotus japonicus
LjContig00049g0014740 Lotus japonicus
Lsat_1_v5_gn_1_16041 Lactuca sativa
Lsat_1_v5_gn_2_39600 Lactuca sativa
Lsat_1_v5_gn_3_36081 Lactuca sativa
Lsat_1_v5_gn_4_162420 Lactuca sativa
Lsat_1_v5_gn_4_171861 Lactuca sativa
Lsat_1_v5_gn_4_27080 Lactuca sativa
Lsat_1_v5_gn_5_133461 Lactuca sativa
Lsat_1_v5_gn_5_147480 Lactuca sativa
Lsat_1_v5_gn_5_147500 Lactuca sativa
Lsat_1_v5_gn_5_15721 Lactuca sativa
Lsat_1_v5_gn_5_45120 Lactuca sativa
Lsat_1_v5_gn_5_45140 Lactuca sativa
Lsat_1_v5_gn_5_63640 Lactuca sativa
Lsat_1_v5_gn_7_72641 Lactuca sativa
Lsat_1_v5_gn_8_75680 Lactuca sativa
Lsat_1_v5_gn_9_11741 Lactuca sativa
Manes.01G131200 Manihot esculenta
Manes.02G089800 Manihot esculenta
Manes.04G160600 Manihot esculenta
Manes.12G039300 Manihot esculenta
Mapoly0005s0175 Marchantia polymorpha
MBI02_g40083_MAGBIO Magnolia biondii
MBI10_g16784_MAGBIO Magnolia biondii
MBI18_g38095_MAGBIO Magnolia biondii
MCO15G705 Micromonas commoda
MD05G1185500 Malus domestica
MD09G1146400 Malus domestica
MD10G1173700 Malus domestica
MD17G1133000 Malus domestica
Medtr1g063790 Medicago truncatula
Medtr1g069345 Medicago truncatula
Medtr3g449950 Medicago truncatula
Medtr3g449990 Medicago truncatula
Medtr5g090420 Medicago truncatula
MELO3C012831.2 Cucumis melo
MELO3C022966.2 Cucumis melo
MELO3C022968.2 Cucumis melo
Migut.D01824 Erythranthe guttata
Migut.M00069 Erythranthe guttata
Migut.M00080 Erythranthe guttata
Migut.M00083 Erythranthe guttata
Migut.M00084 Erythranthe guttata
Migut.M00085 Erythranthe guttata
Migut.M00086 Erythranthe guttata
Migut.M00116 Erythranthe guttata
Migut.M00117 Erythranthe guttata
Migut.M00118 Erythranthe guttata
Migut.M00119 Erythranthe guttata
Migut.M00120 Erythranthe guttata
Migut.M00121 Erythranthe guttata
Migut.N02237 Erythranthe guttata
MSTRG.12264 Avicennia marina
MSTRG.14104 Avicennia marina
MSTRG.14888 Avicennia marina
MSTRG.14889 Avicennia marina
MSTRG.14892 Avicennia marina
Nitab4.5_0000019g0280 Nicotiana tabacum
Nitab4.5_0000385g0140 Nicotiana tabacum
Nitab4.5_0000392g0050 Nicotiana tabacum
Nitab4.5_0003755g0010 Nicotiana tabacum
Nitab4.5_0003755g0020 Nicotiana tabacum
Nitab4.5_0004406g0050 Nicotiana tabacum
Nitab4.5_0006378g0030 Nicotiana tabacum
Nitab4.5_0006644g0020 Nicotiana tabacum
Nitab4.5_0008321g0020 Nicotiana tabacum
Nn1g03043 Nelumbo nucifera
Nn2g15990 Nelumbo nucifera
Nn2g16052 Nelumbo nucifera
Nn3g20380 Nelumbo nucifera
Nn3g20384 Nelumbo nucifera
Nn4g26475 Nelumbo nucifera
Nn5g27631 Nelumbo nucifera
Oeu003262.1 Olea europaea
Oeu007463.1 Olea europaea
Oeu007464.1 Olea europaea
Oeu012356.1 Olea europaea
Oeu022918.1 Olea europaea
Oeu033548.3 Olea europaea
Oeu056848.1 Olea europaea
Os02g0294600 Oryza sativa ssp. japonica
Os10g0465000 Oryza sativa ssp. japonica
Peaxi162Scf00043g00204 Petunia axillaris
Peaxi162Scf00047g02230 Petunia axillaris
Peaxi162Scf00359g01221 Petunia axillaris
PGR042G3409 Punica granatum
PGR083G2127 Punica granatum
PGSC0003DMG400007716 Solanum tuberosum
PGSC0003DMG400028814 Solanum tuberosum
Phvul.001G167600 Phaseolus vulgaris
Phvul.006G027500 Phaseolus vulgaris
Phvul.008G196400 Phaseolus vulgaris
Potri.002G055800 Populus trichocarpa
Potri.005G206600 Populus trichocarpa
Potri.008G002700 Populus trichocarpa
Potri.010G254300 Populus trichocarpa
Potri.014G194100 Populus trichocarpa
Pp3c11_18610 Physcomitrium patens
Pp3c7_3690 Physcomitrium patens
PRCOL_00005022 Prasinoderma coloniale
PRCOL_00006331 Prasinoderma coloniale
Prupe.1G352100 Prunus persica
Prupe.3G179200 Prunus persica
Prupe.8G212300 Prunus persica
Psat0s255g0040 Pisum sativum
Psat2g018240 Pisum sativum
Psat5g182520 Pisum sativum
Psat6g064200 Pisum sativum
PSO170G6159 Papaver somniferum
PSO675G7486 Papaver somniferum
PSO675G8969 Papaver somniferum
QL01p000253 Quercus lobata
QL08p045507 Quercus lobata
QL09p042455 Quercus lobata
RcHm_v2.0_Chr2g0152471 Rosa chinensis
RcHm_v2.0_Chr6g0285971 Rosa chinensis
Rhsim01G0204000 Rhododendron simsii
Rhsim01G0259400 Rhododendron simsii
Rhsim13G0166600 Rhododendron simsii
Sabra02G0045300 Salix brachista
Sabra05G0157100 Salix brachista
Sabra08G0000700 Salix brachista
SalBow6G3782 Salvia bowleyana
SalBow7G0942 Salvia bowleyana
Sc10g0006570 Simmondsia chinensis
Sc17g0002880 Simmondsia chinensis
Sed0007716 Sechium edule
Sed0012735 Sechium edule
Sed0021790 Sechium edule
Sed0027128 Sechium edule
SEGI_15505 Sequoiadendron giganteum
SGA_v2.0_scaffold3G01598 Striga asiatica
SGA_v2.0_scaffold49G18387 Striga asiatica
SGA_v2.0_scaffold73G24473 Striga asiatica
SHI10526 Sapria himalayana
SMO232G0108 Selaginella moellendorffii
Solyc05g025510.3 Solanum lycopersicum
Solyc07g044850.3 Solanum lycopersicum
Solyc09g064310.3 Solanum lycopersicum
Solyc09g064320.3 Solanum lycopersicum
Solyc12g006300.2 Solanum lycopersicum
Solyc12g006317.1 Solanum lycopersicum
Sopen05g019720 Solanum pennellii
Sopen07g023410 Solanum pennellii
Sopen09g025480 Solanum pennellii
Sopen12g002260 Solanum pennellii
Sp2g08740 Schrenkiella parvula
Sp2g26750 Schrenkiella parvula
Sp6g34330 Schrenkiella parvula
TAR362G0874 Trochodendron aralioides
TAR624G0727 Trochodendron aralioides
TAR626G1842 Trochodendron aralioides
TAR633G0593 Trochodendron aralioides
THA.LOC104801118 Tarenaya hassleriana
THA.LOC104818401 Tarenaya hassleriana
Thecc.01G166700 Theobroma cacao
Thecc.02G151800 Theobroma cacao
Thhalv10003179m.g Eutrema salsugineum
Thhalv10013060m.g Eutrema salsugineum
TPR.G14758 Trifolium pratense
TPR.G22855 Trifolium pratense
TPR.G8785 Trifolium pratense
TWI12G0775 Tripterygium wilfordii
TWI14G0856 Tripterygium wilfordii
TWI23G0089 Tripterygium wilfordii
TWI59G0554 Tripterygium wilfordii
unitig_52.g17318 Utricularia gibba
unitig_62.g23251 Utricularia gibba
unitig_699.g19322 Utricularia gibba
vmacro14786 Vaccinium macrocarpon
vmacro16030 Vaccinium macrocarpon
VMungo0464G1631 Vigna mungo
VMungo0540G0221 Vigna mungo
VMungo0647G2499 Vigna mungo
VMungo1383G2423 Vigna mungo
Zm00001eb046310 Zea mays
Zm00001eb173190 Zea mays
Zm00001eb261740 Zea mays

User provided reference genes

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