Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p27110 Brassica napus
A02p10070 Brassica napus
A03p14440 Brassica napus
A09p19350 Brassica napus
A10p01930 Brassica napus
A10p11990 Brassica napus
Aa31LG1G9180 Aethionema arabicum
Aa31LG1G9190 Aethionema arabicum
Aa31LG2G12090 Aethionema arabicum
Aa31LG3G10640 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2865 Anthoceros agrestis
Actinidia05734 Actinidia chinensis
Actinidia21084 Actinidia chinensis
Actinidia24864 Actinidia chinensis
Actinidia30897 Actinidia chinensis
Actinidia35314 Actinidia chinensis
Actinidia38627 Actinidia chinensis
Ah.04g159870 Amaranthus hybridus
Ah.06g183070 Amaranthus hybridus
Ah.06g190270 Amaranthus hybridus
AL1G12910 Arabidopsis lyrata
AL1G65130 Arabidopsis lyrata
AL8G30150 Arabidopsis lyrata
Aqoxy2G03172 Aquilegia oxysepala
Aqoxy4G02087 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4AME8L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C2FWCT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EM1RFY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FP0QNU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J9BD7G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N8YXAN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U6HGF1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X0EQV8 Arachis hypogaea
AT1G03380 Arabidopsis thaliana
AT1G54710 Arabidopsis thaliana
AT5G54730 Arabidopsis thaliana
ATR0005G001 Amborella trichopoda
ATR0580G230 Amborella trichopoda
ATR0618G181 Amborella trichopoda
ATR1088G016 Amborella trichopoda
Atru.chr2.3205 Acer truncatum
Atru.chr2.524 Acer truncatum
Atru.chr5.1315 Acer truncatum
Atru.chr5.1316 Acer truncatum
Atru.chr5.1317 Acer truncatum
AUR62000848 Chenopodium quinoa
AUR62005127 Chenopodium quinoa
AUR62015639 Chenopodium quinoa
AUR62029232 Chenopodium quinoa
BcaB01g04322 Brassica carinata
BcaB04g20140 Brassica carinata
BcaB05g22155 Brassica carinata
BcaB06g26386 Brassica carinata
BcaB07g31100 Brassica carinata
BcaB08g35831 Brassica carinata
BcaC01g06324 Brassica carinata
BcaC03g14293 Brassica carinata
BcaC04g20308 Brassica carinata
BcaC04g22028 Brassica carinata
BcaC05g24533 Brassica carinata
BcaC09g49609 Brassica carinata
BolC1t03423H Brassica oleracea
BolC2t07777H Brassica oleracea
BolC3t14101H Brassica oleracea
BolC5t28968H Brassica oleracea
BolC9t55356H Brassica oleracea
BolC9t57387H Brassica oleracea
BraA01t02845Z Brassica rapa
BraA02t06076Z Brassica rapa
BraA03t10740Z Brassica rapa
BraA09t37552Z Brassica rapa
BraA10t42466Z Brassica rapa
BraA10t43301Z Brassica rapa
C01p34530 Brassica napus
C02p16710 Brassica napus
C03p16810 Brassica napus
C03p16830 Brassica napus
C05p01870 Brassica napus
C09p24390 Brassica napus
C09p45150 Brassica napus
CAN.G134.233 Capsicum annuum
CAN.G337.152 Capsicum annuum
CANSAT11G2547 Cannabis sativa
CANSAT54G2580 Cannabis sativa
CARHR002760 Cardamine hirsuta
CARHR055840 Cardamine hirsuta
CARHR268040 Cardamine hirsuta
Carub.0001s0251 Capsella rubella
Carub.0002s0889 Capsella rubella
Carub.0008s1497 Capsella rubella
Ca_01755_v3 Cicer arietinum L.
Ca_01760_v3 Cicer arietinum L.
Ca_01761_v3 Cicer arietinum L.
Ca_10081_v3 Cicer arietinum L.
Ca_10389_v3 Cicer arietinum L.
CBR_g6304 Chara braunii
Cc02_g32430 Coffea canephora
Cc05_g13210 Coffea canephora
CDE02G0084 Ceratophyllum demersum
CDE05G0276 Ceratophyllum demersum
CDE05G1975 Ceratophyllum demersum
CDE05G2341 Ceratophyllum demersum
CDE11G0177 Ceratophyllum demersum
Cfa006525 Carpinus fangiana
Ciclev10000138m.g Citrus clementina
Ciclev10007389m.g Citrus clementina
Ciclev10018690m.g Citrus clementina
CiPaw.07G012900 Carya illinoinensis
CiPaw.07G097800 Carya illinoinensis
CiPaw.08G101200 Carya illinoinensis
CiPaw.08G167900 Carya illinoinensis
CiPaw.11G183400 Carya illinoinensis
CiPaw.12G126300 Carya illinoinensis
ClCG03G016690 Citrullus lanatus
ClCG05G014790 Citrullus lanatus
ClCG09G006690 Citrullus lanatus
COL.COLO4_09156 Corchorus olitorius
COL.COLO4_09563 Corchorus olitorius
COL.COLO4_13556 Corchorus olitorius
Cpa.g.sc84.121 Carica papaya
Cpa.g.sc9.141 Carica papaya
Cpa.g.sc97.73 Carica papaya
CsaV3_1G039320 Cucumis sativus L.
CsaV3_3G022880 Cucumis sativus L.
CsaV3_7G028450 Cucumis sativus L.
CsaV3_UNG229010 Cucumis sativus L.
CsaV3_UNG229020 Cucumis sativus L.
CSS0010177 Camellia sinensis var. sinensis
CSS0012744 Camellia sinensis var. sinensis
CSS0016690 Camellia sinensis var. sinensis
CSS0021708 Camellia sinensis var. sinensis
CSS0026650 Camellia sinensis var. sinensis
CSS0039456 Camellia sinensis var. sinensis
CSS0040351 Camellia sinensis var. sinensis
CSS0042691 Camellia sinensis var. sinensis
DCAR_000309 Daucus carota
DCAR_001934 Daucus carota
DCAR_022522 Daucus carota
DCAR_029450 Daucus carota
Dinv03937 Davidia involucrata
Dinv11275 Davidia involucrata
Dinv22308 Davidia involucrata
Dinv22920 Davidia involucrata
Dinv32974 Davidia involucrata
Duzib138G1839 Durio zibethinus
Duzib177G0168 Durio zibethinus
Duzib211G0097 Durio zibethinus
Duzib213G0680 Durio zibethinus
Duzib268G1066 Durio zibethinus
ECA233G6059 Erigeron canadensis
ECA246G1276 Erigeron canadensis
ECA246G3242 Erigeron canadensis
ECA247G1588 Erigeron canadensis
EL10Ac4g07983 Beta vulgaris
EL10Ac4g09289 Beta vulgaris
EL10Ac6g13810 Beta vulgaris
EL10Ac7g16487 Beta vulgaris
Eucgr.B02027 Eucalyptus grandis
Eucgr.F03423 Eucalyptus grandis
Eucgr.H01605 Eucalyptus grandis
FAN02G2273 Fragaria x ananassa
FAN02G3686 Fragaria x ananassa
FAN05G1651 Fragaria x ananassa
FAN05G2935 Fragaria x ananassa
FAN09G1386 Fragaria x ananassa
FAN11G3615 Fragaria x ananassa
FAN14G0612 Fragaria x ananassa
FAN15G0286 Fragaria x ananassa
FAN15G3740 Fragaria x ananassa
FAN16G2991 Fragaria x ananassa
FAN20G0526 Fragaria x ananassa
FAN21G0746 Fragaria x ananassa
FAN21G1514 Fragaria x ananassa
FAN21G1944 Fragaria x ananassa
FAN21G2089 Fragaria x ananassa
FAN24G0632 Fragaria x ananassa
FAN25G3568 Fragaria x ananassa
FAN27G1000 Fragaria x ananassa
FvH4_2g24310 Fragaria vesca
FvH4_3g21770 Fragaria vesca
FvH4_6g04980 Fragaria vesca
Glyma.03G148700 Glycine max
Glyma.06G267000 Glycine max
Glyma.10G157700 Glycine max
Glyma.12G136000 Glycine max
Glyma.12G214600 Glycine max
Glyma.13G287000 Glycine max
Glyma.19G152000 Glycine max
Glyma.20G230851 Glycine max
Glyma.20G230900 Glycine max
Gohir.A01G074300 Gossypium hirsutum
Gohir.A11G261000 Gossypium hirsutum
Gohir.A11G280400 Gossypium hirsutum
Gohir.A12G007200 Gossypium hirsutum
Gohir.A13G172700 Gossypium hirsutum
Gohir.D01G060800 Gossypium hirsutum
Gohir.D11G271300 Gossypium hirsutum
Gohir.D11G290700 Gossypium hirsutum
Gohir.D12G006600 Gossypium hirsutum
Gohir.D13G178500 Gossypium hirsutum
Gorai.002G082200 Gossypium raimondii
Gorai.007G291800 Gossypium raimondii
Gorai.007G314600 Gossypium raimondii
Gorai.008G006700 Gossypium raimondii
Gorai.013G203700 Gossypium raimondii
GSVIVG01001549001 Vitis vinifera
GSVIVG01011044001 Vitis vinifera
GSVIVG01014598001 Vitis vinifera
GSVIVG01014601001 Vitis vinifera
GSVIVG01014602001 Vitis vinifera
GSVIVG01022020001 Vitis vinifera
HanXRQChr05g0159231 Helianthus annuus
HanXRQChr08g0233951 Helianthus annuus
HanXRQChr10g0283131 Helianthus annuus
HanXRQChr16g0512331 Helianthus annuus
Haze_04260 Corylus avellana
Haze_04791 Corylus avellana
Haze_09606 Corylus avellana
Haze_27762 Corylus avellana
Hma1.2p1_0257F.1_g104010 Hydrangea macrophylla
Hma1.2p1_0538F.1_g174370 Hydrangea macrophylla
HPP92_011812 Vanilla planifolia
HPP92_015948 Vanilla planifolia
HPP92_015951 Vanilla planifolia
Hund02138 Selenicereus undatus
Hund07027 Selenicereus undatus
Hund21674 Selenicereus undatus
Lalb_Chr03g0030151 Lupinus albus
Lalb_Chr03g0030161 Lupinus albus
Lalb_Chr06g0163231 Lupinus albus
Lalb_Chr06g0167841 Lupinus albus
Lalb_Chr14g0366091 Lupinus albus
Lalb_Chr19g0134731 Lupinus albus
Lalb_Chr22g0357051 Lupinus albus
Lj1C41T12 Lonicera japonica
Lj1C863G20 Lonicera japonica
Lj1g0020362 Lotus japonicus
Lj3g0015626 Lotus japonicus
Lj5g0002193 Lotus japonicus
Lj8A165T111 Lonicera japonica
Lj9C678G11 Lonicera japonica
Lsat_1_v5_gn_4_136881 Lactuca sativa
Lsat_1_v5_gn_5_37921 Lactuca sativa
Lsat_1_v5_gn_5_39040 Lactuca sativa
Lsat_1_v5_gn_5_5661 Lactuca sativa
Lsat_1_v5_gn_5_5681 Lactuca sativa
Lsat_1_v5_gn_9_1741 Lactuca sativa
Manes.01G211900 Manihot esculenta
Manes.03G122700 Manihot esculenta
Manes.08G124500 Manihot esculenta
Manes.09G161900 Manihot esculenta
Manes.15G076800 Manihot esculenta
Mapoly0006s0048 Marchantia polymorpha
MBI02_g18407_MAGBIO Magnolia biondii
MBI18_g24130_MAGBIO Magnolia biondii
MBI18_g28250_MAGBIO Magnolia biondii
MBI19_g13520_MAGBIO Magnolia biondii
MD01G1018400 Malus domestica
MD03G1089400 Malus domestica
MD03G1212200 Malus domestica
MD03G1272800 Malus domestica
MD04G1212000 Malus domestica
MD11G1227300 Malus domestica
MD11G1293800 Malus domestica
MD12G1226700 Malus domestica
Medtr1g082300 Medicago truncatula
Medtr1g089110 Medicago truncatula
Medtr2g082770 Medicago truncatula
MELO3C015358.2 Cucumis melo
MELO3C015877.2 Cucumis melo
MELO3C018126.2 Cucumis melo
MELO3C028484.2 Cucumis melo
Migut.D00247 Erythranthe guttata
Migut.H01859 Erythranthe guttata
Migut.N02132 Erythranthe guttata
MSTRG.12955 Avicennia marina
MSTRG.15168 Avicennia marina
MSTRG.17430 Avicennia marina
MSTRG.18204 Avicennia marina
MSTRG.21589 Avicennia marina
Nitab4.5_0000092g0040 Nicotiana tabacum
Nitab4.5_0000245g0290 Nicotiana tabacum
Nitab4.5_0000397g0080 Nicotiana tabacum
Nitab4.5_0000749g0010 Nicotiana tabacum
Nitab4.5_0001903g0120 Nicotiana tabacum
Nitab4.5_0002238g0080 Nicotiana tabacum
Nn1g03665 Nelumbo nucifera
Nn1g06996 Nelumbo nucifera
Nn3g17316 Nelumbo nucifera
Nn3g21207 Nelumbo nucifera
Nn4g26109 Nelumbo nucifera
Oeu001450.1 Olea europaea
Oeu007622.1 Olea europaea
Oeu007627.1 Olea europaea
Oeu013855.1 Olea europaea
Oeu042914.1 Olea europaea
Oeu062620.4 Olea europaea
Os01g0786900 Oryza sativa ssp. japonica
Os05g0405900 Oryza sativa ssp. japonica
Peaxi162Scf00434g00727 Petunia axillaris
Peaxi162Scf01086g00110 Petunia axillaris
Peaxi162Scf01097g00111 Petunia axillaris
Peaxi162Scf01097g00112 Petunia axillaris
PGR031G2196 Punica granatum
PGR083G0549 Punica granatum
PGR119G2390 Punica granatum
PGSC0003DMG400019227 Solanum tuberosum
PGSC0003DMG400025620 Solanum tuberosum
PGSC0003DMG400028594 Solanum tuberosum
Phvul.001G146700 Phaseolus vulgaris
Phvul.005G091300 Phaseolus vulgaris
Phvul.007G183100 Phaseolus vulgaris
Phvul.011G140900 Phaseolus vulgaris
Potri.001G417000 Populus trichocarpa
Potri.005G040300 Populus trichocarpa
Potri.011G132700 Populus trichocarpa
Potri.013G028200 Populus trichocarpa
Pp3c20_18810 Physcomitrium patens
Pp3c23_8190 Physcomitrium patens
Pp3c24_5800 Physcomitrium patens
Pp3c8_5760 Physcomitrium patens
Prupe.4G201900 Prunus persica
Prupe.6G332400 Prunus persica
Prupe.8G249300 Prunus persica
Psat5g249880 Pisum sativum
Psat6g148560 Pisum sativum
Psat6g169560 Pisum sativum
PSO017G6374 Papaver somniferum
PSO170G4830 Papaver somniferum
PSO210G2393 Papaver somniferum
PSO541G0622 Papaver somniferum
PSO675G0598 Papaver somniferum
PSO675G2225 Papaver somniferum
PSO832G0916 Papaver somniferum
QL03p003637 Quercus lobata
QL08p013394 Quercus lobata
QL08p013554 Quercus lobata
QL12p023119 Quercus lobata
RcHm_v2.0_Chr3g0453491 Rosa chinensis
RcHm_v2.0_Chr5g0037241 Rosa chinensis
RcHm_v2.0_Chr6g0292181 Rosa chinensis
Rhsim01G0278400 Rhododendron simsii
Rhsim07G0178500 Rhododendron simsii
RhsimUnG0253300 Rhododendron simsii
Sabra05G0039300 Salix brachista
Sabra11G0119500 Salix brachista
Sabra13G0028700 Salix brachista
Sabra16G0283400 Salix brachista
SalBow3G0971 Salvia bowleyana
SalBow7G2055 Salvia bowleyana
Sc03g0009120 Simmondsia chinensis
Sc09g0003620 Simmondsia chinensis
Sed0016223 Sechium edule
Sed0017837 Sechium edule
Sed0020701 Sechium edule
Sed0024597 Sechium edule
Sed0024628 Sechium edule
SEGI_02236 Sequoiadendron giganteum
SEGI_08841 Sequoiadendron giganteum
SEGI_29639 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05778 Striga asiatica
SGA_v2.0_scaffold1G00433 Striga asiatica
SHI18222 Sapria himalayana
SHI18223 Sapria himalayana
SMO146G0123 Selaginella moellendorffii
Solyc01g098430.3 Solanum lycopersicum
Solyc07g064060.3 Solanum lycopersicum
Solyc12g005230.3 Solanum lycopersicum
Sopen01g041990 Solanum pennellii
Sopen07g032200 Solanum pennellii
Sopen12g001220 Solanum pennellii
Sp1g02380 Schrenkiella parvula
Sp6g16670 Schrenkiella parvula
SpUN0002_0210 Schrenkiella parvula
TAR362G0210 Trochodendron aralioides
TAR365G1201 Trochodendron aralioides
TAR624G0744 Trochodendron aralioides
TAR626G1457 Trochodendron aralioides
TAR636G1465 Trochodendron aralioides
THA.LOC104801208 Tarenaya hassleriana
THA.LOC104805847 Tarenaya hassleriana
THA.LOC104813412 Tarenaya hassleriana
THA.LOC104821048 Tarenaya hassleriana
Thecc.01G286900 Theobroma cacao
Thecc.05G298200 Theobroma cacao
Thecc.07G054500 Theobroma cacao
Thhalv10006706m.g Eutrema salsugineum
Thhalv10012811m.g Eutrema salsugineum
Thhalv10023243m.g Eutrema salsugineum
TPR.G16922 Trifolium pratense
TPR.G16932 Trifolium pratense
TPR.G16953 Trifolium pratense
TPR.G2713 Trifolium pratense
TPR.G36798 Trifolium pratense
TWI12G1213 Tripterygium wilfordii
TWI36G1034 Tripterygium wilfordii
TWI38G1832 Tripterygium wilfordii
TWI39G1140 Tripterygium wilfordii
unitig_0.g1189 Utricularia gibba
unitig_0.g638 Utricularia gibba
unitig_26.g9970 Utricularia gibba
unitig_52.g17358 Utricularia gibba
unitig_61.g26320 Utricularia gibba
vmacro05043 Vaccinium macrocarpon
vmacro09747 Vaccinium macrocarpon
vmacro09748 Vaccinium macrocarpon
vmacro14950 Vaccinium macrocarpon
VMungo0720G2593 Vigna mungo
VMungo1080G1382 Vigna mungo
VMungo1127G1627 Vigna mungo
VMungo1383G3368 Vigna mungo
Zm00001eb151200 Zea mays
Zm00001eb287690 Zea mays
Zm00001eb349780 Zea mays

User provided reference genes

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