Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p09700 Brassica napus
A02p30790 Brassica napus
A03p24860 Brassica napus
A03p50580 Brassica napus
A04p14220 Brassica napus
A05p04830 Brassica napus
A06p45280 Brassica napus
A07p25040 Brassica napus
A09p52530 Brassica napus
Aa31LG10G14360 Aethionema arabicum
Aa31LG1G26240 Aethionema arabicum
Aa31LG6G390 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2158 Anthoceros agrestis
Actinidia03413 Actinidia chinensis
Actinidia05781 Actinidia chinensis
Actinidia10867 Actinidia chinensis
Actinidia12637 Actinidia chinensis
Actinidia21625 Actinidia chinensis
Actinidia25922 Actinidia chinensis
Actinidia30944 Actinidia chinensis
Actinidia31489 Actinidia chinensis
Ah.05g177690 Amaranthus hybridus
Ah.07g199900 Amaranthus hybridus
Ah.12g053850 Amaranthus hybridus
AL4G43750 Arabidopsis lyrata
AL5G42470 Arabidopsis lyrata
AL7G36950 Arabidopsis lyrata
AL8G11120 Arabidopsis lyrata
Aqoxy3G02603 Aquilegia oxysepala
Aqoxy7G00834 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1Q3TB5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2BM1Y5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.84UTM8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A0XYYU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EM4L5Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T6L3DL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X2EPYD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X82UB4 Arachis hypogaea
AT2G44680 Arabidopsis thaliana
AT3G60250 Arabidopsis thaliana
AT4G17640 Arabidopsis thaliana
AT5G47080 Arabidopsis thaliana
ATR0582G026 Amborella trichopoda
ATR0665G016 Amborella trichopoda
ATR0665G614 Amborella trichopoda
ATR0684G034 Amborella trichopoda
Atru.chr12.2331 Acer truncatum
Atru.chr5.86 Acer truncatum
Atru.chr9.1155 Acer truncatum
AUR62007193 Chenopodium quinoa
AUR62013773 Chenopodium quinoa
AUR62018810 Chenopodium quinoa
AUR62023383 Chenopodium quinoa
BcaB02g07424 Brassica carinata
BcaB02g08182 Brassica carinata
BcaB02g08847 Brassica carinata
BcaB04g18435 Brassica carinata
BcaB06g27575 Brassica carinata
BcaB06g27665 Brassica carinata
BcaC01g05202 Brassica carinata
BcaC02g08994 Brassica carinata
BcaC03g16933 Brassica carinata
BcaC06g31416 Brassica carinata
BcaC06g31417 Brassica carinata
BcaC06g34286 Brassica carinata
BcaC07g40420 Brassica carinata
BcaC08g45044 Brassica carinata
BcaC09g51624 Brassica carinata
BcaNung00073 Brassica carinata
BcaNung03451 Brassica carinata
BcaNung04597 Brassica carinata
BcaNung04600 Brassica carinata
BcaNung06714 Brassica carinata
BcaNung07143 Brassica carinata
BcaNung07207 Brassica carinata
BolC1t01097H Brassica oleracea
BolC2t10866H Brassica oleracea
BolC3t15313H Brassica oleracea
BolC4t22195H Brassica oleracea
BolC4t26377H Brassica oleracea
BolC6t37826H Brassica oleracea
BolC7t43621H Brassica oleracea
BolC7t45398H Brassica oleracea
BolC8t51122H Brassica oleracea
BraA01t00913Z Brassica rapa
BraA02t08093Z Brassica rapa
BraA03t11693Z Brassica rapa
BraA03t14148Z Brassica rapa
BraA04t17081Z Brassica rapa
BraA04t17135Z Brassica rapa
BraA05t19458Z Brassica rapa
BraA07t30144Z Brassica rapa
BraA09t40684Z Brassica rapa
C01p11310 Brassica napus
C02p48350 Brassica napus
C03p29650 Brassica napus
C04p05660 Brassica napus
C04p47740 Brassica napus
C06p26650 Brassica napus
C07p30800 Brassica napus
C07p48900 Brassica napus
C08p35290 Brassica napus
CAN.G112.11 Capsicum annuum
CAN.G422.11 Capsicum annuum
CAN.G756.32 Capsicum annuum
CAN.G768.4 Capsicum annuum
CANSAT21G0160 Cannabis sativa
CANSAT25G2604 Cannabis sativa
CARHR110930 Cardamine hirsuta
CARHR139890 Cardamine hirsuta
CARHR170570 Cardamine hirsuta
CARHR174310 Cardamine hirsuta
CARHR224360 Cardamine hirsuta
Carub.0004s2723 Capsella rubella
Carub.0005s2700 Capsella rubella
Carub.0007s2374 Capsella rubella
Carub.0008s0071 Capsella rubella
Ca_22025_v3 Cicer arietinum L.
Ca_24618_v3 Cicer arietinum L.
CBR_g5678 Chara braunii
Cc02_g25430 Coffea canephora
Cc08_g11150 Coffea canephora
CDE02G1864 Ceratophyllum demersum
CDE02G4193 Ceratophyllum demersum
CDE04G2634 Ceratophyllum demersum
CDE09G0938 Ceratophyllum demersum
CDE11G0352 Ceratophyllum demersum
CDE11G1192 Ceratophyllum demersum
CDE12G0001 Ceratophyllum demersum
Cfa011037 Carpinus fangiana
Cfa012349 Carpinus fangiana
Cfa026322 Carpinus fangiana
Ciclev10021491m.g Citrus clementina
Ciclev10021529m.g Citrus clementina
CiPaw.11G084500 Carya illinoinensis
CiPaw.12G056300 Carya illinoinensis
CiPaw.13G023100 Carya illinoinensis
CiPaw.14G017900 Carya illinoinensis
ClCG06G008090 Citrullus lanatus
ClCG09G012620 Citrullus lanatus
COL.COLO4_12366 Corchorus olitorius
Cpa.g.sc98.66 Carica papaya
Cpa.g.sc98.67 Carica papaya
Cpa.g.sc98.69 Carica papaya
Cre01.g016556 Chlamydomonas reinhardtii
CsaV3_2G011100 Cucumis sativus L.
CsaV3_3G049750 Cucumis sativus L.
CSS0015060 Camellia sinensis var. sinensis
CSS0032818 Camellia sinensis var. sinensis
CSS0033545 Camellia sinensis var. sinensis
DCAR_005590 Daucus carota
DCAR_014650 Daucus carota
DCAR_018069 Daucus carota
DCAR_025040 Daucus carota
DCAR_025042 Daucus carota
DCAR_029505 Daucus carota
Dinv23338 Davidia involucrata
Dinv25154 Davidia involucrata
Dinv28890 Davidia involucrata
Dinv34522 Davidia involucrata
Dinv43598 Davidia involucrata
Dinv44037 Davidia involucrata
Duzib068G0841 Durio zibethinus
Duzib133G0611 Durio zibethinus
Duzib138G1535 Durio zibethinus
Duzib205G1975 Durio zibethinus
Duzib268G1211 Durio zibethinus
ECA234G1344 Erigeron canadensis
ECA240G4635 Erigeron canadensis
ECA246G2416 Erigeron canadensis
ECA248G1070 Erigeron canadensis
EL10Ac1g00732 Beta vulgaris
EL10Ac5g12227 Beta vulgaris
Eucgr.D02139 Eucalyptus grandis
Eucgr.E01661 Eucalyptus grandis
FAN01G2224 Fragaria x ananassa
FAN01G2542 Fragaria x ananassa
FAN03G0955 Fragaria x ananassa
FAN03G1802 Fragaria x ananassa
FAN04G2284 Fragaria x ananassa
FAN06G1594 Fragaria x ananassa
FAN06G3936 Fragaria x ananassa
FAN08G1919 Fragaria x ananassa
FAN10G0212 Fragaria x ananassa
FAN10G2598 Fragaria x ananassa
FAN10G3345 Fragaria x ananassa
FAN13G2000 Fragaria x ananassa
FAN18G4232 Fragaria x ananassa
FvH4_5g20700 Fragaria vesca
FvH4_7g09090 Fragaria vesca
FvH4_7g26460 Fragaria vesca
Glyma.01G203800 Glycine max
Glyma.05G067100 Glycine max
Glyma.05G067300 Glycine max
Glyma.11G039100 Glycine max
Glyma.17G149300 Glycine max
Glyma.17G149500 Glycine max
Gohir.A03G003600 Gossypium hirsutum
Gohir.A08G029000 Gossypium hirsutum
Gohir.A08G140000 Gossypium hirsutum
Gohir.A08G162100 Gossypium hirsutum
Gohir.A11G029300 Gossypium hirsutum
Gohir.A11G074500 Gossypium hirsutum
Gohir.A12G098400 Gossypium hirsutum
Gohir.A12G212300 Gossypium hirsutum
Gohir.D03G168800 Gossypium hirsutum
Gohir.D08G039700 Gossypium hirsutum
Gohir.D08G161000 Gossypium hirsutum
Gohir.D08G182100 Gossypium hirsutum
Gohir.D11G027800 Gossypium hirsutum
Gohir.D11G079200 Gossypium hirsutum
Gohir.D12G101600 Gossypium hirsutum
Gohir.D12G214800 Gossypium hirsutum
Gorai.003G178900 Gossypium raimondii
Gorai.004G038500 Gossypium raimondii
Gorai.004G167300 Gossypium raimondii
Gorai.004G191000 Gossypium raimondii
Gorai.007G030400 Gossypium raimondii
Gorai.007G084900 Gossypium raimondii
Gorai.008G110700 Gossypium raimondii
Gorai.008G230400 Gossypium raimondii
GSVIVG01013280001 Vitis vinifera
GSVIVG01018326001 Vitis vinifera
HanXRQChr01g0019781 Helianthus annuus
HanXRQChr06g0167141 Helianthus annuus
HanXRQChr06g0168311 Helianthus annuus
HanXRQChr11g0344031 Helianthus annuus
HanXRQChr16g0509261 Helianthus annuus
HanXRQChr16g0521001 Helianthus annuus
HanXRQChr17g0535561 Helianthus annuus
Haze_02888 Corylus avellana
Haze_08347 Corylus avellana
Haze_26215 Corylus avellana
Hma1.2p1_0173F.1_g076380 Hydrangea macrophylla
Hma1.2p1_0264F.1_g105620 Hydrangea macrophylla
Hma1.2p1_1397F.1_g280680 Hydrangea macrophylla
Hma1.2p1_1672F.1_g296820 Hydrangea macrophylla
Hma1.2p1_2356F.1_g320560 Hydrangea macrophylla
HPP92_001529 Vanilla planifolia
HPP92_001553 Vanilla planifolia
HPP92_003333 Vanilla planifolia
Hund11306 Selenicereus undatus
Hund14469 Selenicereus undatus
Hund17116 Selenicereus undatus
Hund27415 Selenicereus undatus
Lalb_Chr05g0214191 Lupinus albus
Lalb_Chr05g0220851 Lupinus albus
Lalb_Chr09g0324071 Lupinus albus
Lalb_Chr09g0324081 Lupinus albus
Lalb_Chr09g0329751 Lupinus albus
Lalb_Chr16g0379331 Lupinus albus
Lalb_Chr16g0386371 Lupinus albus
Lj2A253T53 Lonicera japonica
Lj2A253T54 Lonicera japonica
Lj2g0013879 Lotus japonicus
Lj4g0018043 Lotus japonicus
Lj7A550G17 Lonicera japonica
Lj8A286G48 Lonicera japonica
Lj8A50G57 Lonicera japonica
Lj8C279G6 Lonicera japonica
Lj9A525G26 Lonicera japonica
Lj9A552T70 Lonicera japonica
Lsat_1_v5_gn_1_83801 Lactuca sativa
Lsat_1_v5_gn_3_15540 Lactuca sativa
Lsat_1_v5_gn_4_40200 Lactuca sativa
Lsat_1_v5_gn_4_80460 Lactuca sativa
Lsat_1_v5_gn_6_94800 Lactuca sativa
Lsat_1_v5_gn_8_132341 Lactuca sativa
Manes.05G057200 Manihot esculenta
Manes.15G174600 Manihot esculenta
Manes.17G025100 Manihot esculenta
Mapoly0023s0136 Marchantia polymorpha
MBI04_g20753_MAGBIO Magnolia biondii
MBI04_g46824_MAGBIO Magnolia biondii
MBI07_g11066_MAGBIO Magnolia biondii
MBI11_g22243_MAGBIO Magnolia biondii
MCO01G307 Micromonas commoda
MD01G1173300 Malus domestica
MD02G1221400 Malus domestica
MD04G1054100 Malus domestica
MD06G1044800 Malus domestica
MD07G1094900 Malus domestica
MD07G1240200 Malus domestica
Medtr1g020070 Medicago truncatula
Medtr4g099170 Medicago truncatula
Medtr5g013590 Medicago truncatula
MELO3C003341.2 Cucumis melo
MELO3C020365.2 Cucumis melo
Migut.B01502 Erythranthe guttata
Migut.E00819 Erythranthe guttata
Migut.N01722 Erythranthe guttata
MSTRG.20669 Avicennia marina
MSTRG.28138 Avicennia marina
MSTRG.4945 Avicennia marina
Nitab4.5_0000293g0120 Nicotiana tabacum
Nitab4.5_0000506g0190 Nicotiana tabacum
Nitab4.5_0000563g0140 Nicotiana tabacum
Nitab4.5_0002341g0060 Nicotiana tabacum
Nitab4.5_0002598g0100 Nicotiana tabacum
Nitab4.5_0006060g0030 Nicotiana tabacum
Nitab4.5_0006622g0050 Nicotiana tabacum
Nitab4.5_0013289g0020 Nicotiana tabacum
Nn3g16182 Nelumbo nucifera
Nn6g33734 Nelumbo nucifera
Oeu010778.1 Olea europaea
Oeu012026.2 Olea europaea
Oeu017318.1 Olea europaea
Oeu024398.1 Olea europaea
Oeu037427.1 Olea europaea
Os07g0495100 Oryza sativa ssp. japonica
Os10g0564900 Oryza sativa ssp. japonica
Peaxi162Scf00103g01213 Petunia axillaris
Peaxi162Scf00190g00611 Petunia axillaris
Peaxi162Scf00423g00816 Petunia axillaris
Peaxi162Scf00793g00362 Petunia axillaris
PGR031G0484 Punica granatum
PGR042G2253 Punica granatum
PGSC0003DMG400007001 Solanum tuberosum
PGSC0003DMG400026584 Solanum tuberosum
PGSC0003DMG403001724 Solanum tuberosum
Phvul.002G002500 Phaseolus vulgaris
Phvul.003G226100 Phaseolus vulgaris
Phvul.003G226300 Phaseolus vulgaris
Potri.001G149600 Populus trichocarpa
Potri.002G139900 Populus trichocarpa
Potri.003G084900 Populus trichocarpa
Potri.014G052100 Populus trichocarpa
Pp3c16_12520 Physcomitrium patens
Pp3c27_4120 Physcomitrium patens
Pp3c5_14940 Physcomitrium patens
Pp3c6_12500 Physcomitrium patens
PRCOL_00006425 Prasinoderma coloniale
Prupe.2G119400 Prunus persica
Prupe.2G268900 Prunus persica
Prupe.5G053000 Prunus persica
Psat2g175440 Pisum sativum
Psat4g076400 Pisum sativum
PSO017G5073 Papaver somniferum
PSO063G6667 Papaver somniferum
PSO478G1221 Papaver somniferum
PSO675G7765 Papaver somniferum
PSO732G0220 Papaver somniferum
PSO732G0393 Papaver somniferum
PSO782G5036 Papaver somniferum
QL04p026608 Quercus lobata
QL04p027009 Quercus lobata
QL12p008434 Quercus lobata
RcHm_v2.0_Chr1g0344941 Rosa chinensis
RcHm_v2.0_Chr1g0373051 Rosa chinensis
RcHm_v2.0_Chr7g0206431 Rosa chinensis
Rhsim07G0038300 Rhododendron simsii
Rhsim11G0008800 Rhododendron simsii
Rhsim11G0008900 Rhododendron simsii
Sabra01G0119600 Salix brachista
Sabra02G0109200 Salix brachista
Sabra03G0055000 Salix brachista
Sabra14G0036900 Salix brachista
Sabra14G0037000 Salix brachista
Sabra14G0039100 Salix brachista
SalBow5G4613 Salvia bowleyana
Sc01g0007890 Simmondsia chinensis
Sc07g0009030 Simmondsia chinensis
Sc22g0001170 Simmondsia chinensis
Sed0005760 Sechium edule
Sed0006440 Sechium edule
Sed0014332 Sechium edule
Sed0015631 Sechium edule
SEGI_18938 Sequoiadendron giganteum
SEGI_26741 Sequoiadendron giganteum
SEGI_27343 Sequoiadendron giganteum
SGA_v2.0_scaffold340G49339 Striga asiatica
SGA_v2.0_scaffold52G19258 Striga asiatica
SGA_v2.0_scaffold662G53406 Striga asiatica
SGA_v2.0_scaffold77G25262 Striga asiatica
SMO114G0061 Selaginella moellendorffii
SMO119G0456 Selaginella moellendorffii
SMO361G0662 Selaginella moellendorffii
Solyc01g088740.4 Solanum lycopersicum
Solyc05g050680.4 Solanum lycopersicum
Solyc06g061000.3 Solanum lycopersicum
Solyc10g061930.1 Solanum lycopersicum
Solyc10g061940.3 Solanum lycopersicum
Sopen01g035580 Solanum pennellii
Sopen05g029090 Solanum pennellii
Sopen06g021140 Solanum pennellii
Sopen10g026140 Solanum pennellii
Sp2g11890 Schrenkiella parvula
Sp4g26760 Schrenkiella parvula
Sp5g02950 Schrenkiella parvula
Sp5g31520 Schrenkiella parvula
Sp7g16500 Schrenkiella parvula
TAR374G0993 Trochodendron aralioides
TAR375G0966 Trochodendron aralioides
TAR629G1876 Trochodendron aralioides
TAR723G0004 Trochodendron aralioides
THA.LOC104798346 Tarenaya hassleriana
THA.LOC104802504 Tarenaya hassleriana
THA.LOC104806683 Tarenaya hassleriana
THA.LOC104807933 Tarenaya hassleriana
THA.LOC104817184 Tarenaya hassleriana
Thecc.01G401000 Theobroma cacao
Thecc.03G237800 Theobroma cacao
Thhalv10000988m.g Eutrema salsugineum
Thhalv10001572m.g Eutrema salsugineum
Thhalv10006152m.g Eutrema salsugineum
Thhalv10025930m.g Eutrema salsugineum
TPR.G22927 Trifolium pratense
TPR.G22968 Trifolium pratense
TPR.G25740 Trifolium pratense
TPR.G32148 Trifolium pratense
TWI14G0015 Tripterygium wilfordii
TWI14G0256 Tripterygium wilfordii
TWI14G0419 Tripterygium wilfordii
TWI59G1263 Tripterygium wilfordii
unitig_0.g1336 Utricularia gibba
unitig_22.g5408 Utricularia gibba
unitig_8.g3847 Utricularia gibba
vmacro00381 Vaccinium macrocarpon
vmacro13525 Vaccinium macrocarpon
vmacro14120 Vaccinium macrocarpon
vmacro23517 Vaccinium macrocarpon
VMungo0251G0999 Vigna mungo
VMungo0251G2829 Vigna mungo
VMungo1215G3434 Vigna mungo
Zm00001eb023910 Zea mays
Zm00001eb075050 Zea mays
Zm00001eb105560 Zea mays
Zm00001eb322050 Zea mays
Zm00001eb390860 Zea mays

User provided reference genes

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