Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p41780 Brassica napus
A03p03180 Brassica napus
A03p18520 Brassica napus
A06p28580 Brassica napus
A09p20170 Brassica napus
A09p65720 Brassica napus
A10p29080 Brassica napus
Aa31LG11G1610 Aethionema arabicum
Aa31LG3G19070 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3887 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.437 Anthoceros agrestis
Actinidia05740 Actinidia chinensis
Actinidia08909 Actinidia chinensis
Actinidia18300 Actinidia chinensis
Actinidia19816 Actinidia chinensis
Actinidia19817 Actinidia chinensis
Actinidia25519 Actinidia chinensis
Actinidia28389 Actinidia chinensis
Actinidia36842 Actinidia chinensis
Ah.04g159970 Amaranthus hybridus
Ah.05g177680 Amaranthus hybridus
Ah.11g046910 Amaranthus hybridus
AL1G19290 Arabidopsis lyrata
AL6G17540 Arabidopsis lyrata
AL8G38660 Arabidopsis lyrata
Aqoxy2G03147 Aquilegia oxysepala
Aqoxy2G03148 Aquilegia oxysepala
Aqoxy5G00637 Aquilegia oxysepala
Aqoxy5G03119 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2BB7K8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.88B2ED Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DI47VI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FXT2JP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I2S2PV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IJ6373 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LR6B6K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M2GZ1F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MG7Y4R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UI8HZR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WNZL0Z Arachis hypogaea
AT1G08860 Arabidopsis thaliana
AT5G07300 Arabidopsis thaliana
AT5G61900 Arabidopsis thaliana
AT5G61910 Arabidopsis thaliana
ATR0706G192 Amborella trichopoda
Atru.chr2.571 Acer truncatum
Atru.chr2.572 Acer truncatum
Atru.chr2.579 Acer truncatum
Atru.chr2.580 Acer truncatum
Atru.chr2.583 Acer truncatum
Atru.chr2.585 Acer truncatum
Atru.chr2.589 Acer truncatum
Atru.chr2.590 Acer truncatum
Atru.chr6.1917 Acer truncatum
AUR62000906 Chenopodium quinoa
AUR62000943 Chenopodium quinoa
AUR62005069 Chenopodium quinoa
AUR62009539 Chenopodium quinoa
AUR62041702 Chenopodium quinoa
AUR62041704 Chenopodium quinoa
BcaB01g06353 Brassica carinata
BcaB07g29814 Brassica carinata
BcaC01g02446 Brassica carinata
BcaC03g18105 Brassica carinata
BcaC06g32450 Brassica carinata
BcaC06g35202 Brassica carinata
BcaC07g39826 Brassica carinata
BcaC07g39827 Brassica carinata
BcaC07g41920 Brassica carinata
BcaC07g41921 Brassica carinata
BolC2t12227H Brassica oleracea
BolC3t12900H Brassica oleracea
BolC3t18772H Brassica oleracea
BolC7t42382H Brassica oleracea
BolC8t52506H Brassica oleracea
BolC9t59690H Brassica oleracea
BraA03t09674Z Brassica rapa
BraA03t11111Z Brassica rapa
BraA06t25803Z Brassica rapa
BraA07t28095Z Brassica rapa
BraA07t29391Z Brassica rapa
BraA09t41915Z Brassica rapa
BraA10t44956Z Brassica rapa
C02p61690 Brassica napus
C03p03600 Brassica napus
C03p65200 Brassica napus
C05p12270 Brassica napus
C07p18720 Brassica napus
C08p49790 Brassica napus
C09p69450 Brassica napus
CAN.G1.35 Capsicum annuum
CAN.G1089.25 Capsicum annuum
CAN.G305.26 Capsicum annuum
CAN.G305.27 Capsicum annuum
CAN.G305.28 Capsicum annuum
CAN.G790.36 Capsicum annuum
CAN.G843.12 Capsicum annuum
CAN.G90.2 Capsicum annuum
CANSAT54G2243 Cannabis sativa
CANSAT56G1992 Cannabis sativa
CARHR008780 Cardamine hirsuta
CARHR205850 Cardamine hirsuta
CARHR275660 Cardamine hirsuta
Carub.0001s0821 Capsella rubella
Carub.0001s0856 Capsella rubella
Carub.0006s0626 Capsella rubella
Carub.0008s2258 Capsella rubella
Ca_09386_v3 Cicer arietinum L.
Ca_16828_v3 Cicer arietinum L.
Ca_22010_v3 Cicer arietinum L.
CBR_g28518 Chara braunii
CBR_g37540 Chara braunii
CBR_g39155 Chara braunii
CBR_g39156 Chara braunii
CBR_g39159 Chara braunii
CBR_g39161 Chara braunii
CBR_g39166 Chara braunii
Cc02_g32840 Coffea canephora
Cc04_g05870 Coffea canephora
CDE09G0955 Ceratophyllum demersum
Cfa006514 Carpinus fangiana
Cfa018706 Carpinus fangiana
CiPaw.07G012100 Carya illinoinensis
CiPaw.07G012200 Carya illinoinensis
CiPaw.08G134000 Carya illinoinensis
CiPaw.08G168900 Carya illinoinensis
CiPaw.08G169400 Carya illinoinensis
CiPaw.08G170500 Carya illinoinensis
CiPaw.08G170900 Carya illinoinensis
CiPaw.08G171400 Carya illinoinensis
CiPaw.08G173800 Carya illinoinensis
CiPaw.08G174100 Carya illinoinensis
CiPaw.08G174400 Carya illinoinensis
CiPaw.08G175000 Carya illinoinensis
CiPaw.08G175200 Carya illinoinensis
CiPaw.08G175800 Carya illinoinensis
CiPaw.08G175900 Carya illinoinensis
CiPaw.08G176200 Carya illinoinensis
CiPaw.08G176300 Carya illinoinensis
CiPaw.08G176500 Carya illinoinensis
CiPaw.08G176900 Carya illinoinensis
CiPaw.11G000900 Carya illinoinensis
ClCG05G000010 Citrullus lanatus
ClCG05G000020 Citrullus lanatus
ClCG11G011220 Citrullus lanatus
COL.COLO4_06948 Corchorus olitorius
COL.COLO4_06949 Corchorus olitorius
COL.COLO4_36078 Corchorus olitorius
COL.COLO4_37257 Corchorus olitorius
Cpa.g.sc13.174 Carica papaya
Cpa.g.sc504.2 Carica papaya
Cre03.g170150 Chlamydomonas reinhardtii
Cre03.g170200 Chlamydomonas reinhardtii
CsaV3_2G009220 Cucumis sativus L.
CsaV3_3G007070 Cucumis sativus L.
CSS0001052 Camellia sinensis var. sinensis
CSS0001183 Camellia sinensis var. sinensis
CSS0020942 Camellia sinensis var. sinensis
CSS0021239 Camellia sinensis var. sinensis
CSS0040447 Camellia sinensis var. sinensis
CSS0042941 Camellia sinensis var. sinensis
CSS0043837 Camellia sinensis var. sinensis
CSS0047216 Camellia sinensis var. sinensis
CSS0048885 Camellia sinensis var. sinensis
DCAR_021395 Daucus carota
DCAR_022261 Daucus carota
DCAR_022262 Daucus carota
DCAR_025651 Daucus carota
Dinv00661 Davidia involucrata
Dinv00875 Davidia involucrata
Dinv01784 Davidia involucrata
Dinv03770 Davidia involucrata
Dinv03771 Davidia involucrata
Dinv03772 Davidia involucrata
Dinv03773 Davidia involucrata
Dinv03774 Davidia involucrata
Dinv04644 Davidia involucrata
Dinv04738 Davidia involucrata
Dinv08259 Davidia involucrata
Dinv13721 Davidia involucrata
Dinv23225 Davidia involucrata
Duzib068G1059 Durio zibethinus
Duzib084G0588 Durio zibethinus
Duzib128G1338 Durio zibethinus
Duzib205G0496 Durio zibethinus
ECA232G1318 Erigeron canadensis
ECA232G3862 Erigeron canadensis
ECA232G4421 Erigeron canadensis
EL10Ac4g09278 Beta vulgaris
EL10Ac5g11285 Beta vulgaris
Eucgr.B01774 Eucalyptus grandis
Eucgr.B02033 Eucalyptus grandis
Eucgr.K00066 Eucalyptus grandis
Eucgr.L03014 Eucalyptus grandis
FAN02G0359 Fragaria x ananassa
FAN02G1133 Fragaria x ananassa
FAN02G3996 Fragaria x ananassa
FAN04G0584 Fragaria x ananassa
FAN05G1004 Fragaria x ananassa
FAN05G3787 Fragaria x ananassa
FAN07G1572 Fragaria x ananassa
FAN09G0416 Fragaria x ananassa
FAN09G0638 Fragaria x ananassa
FAN09G3211 Fragaria x ananassa
FAN09G3603 Fragaria x ananassa
FAN13G2020 Fragaria x ananassa
FAN14G3977 Fragaria x ananassa
FAN14G5873 Fragaria x ananassa
FAN17G0674 Fragaria x ananassa
FAN17G1048 Fragaria x ananassa
FAN18G2081 Fragaria x ananassa
FAN18G2599 Fragaria x ananassa
FAN21G1153 Fragaria x ananassa
FAN22G0852 Fragaria x ananassa
FvH4_5g09500 Fragaria vesca
FvH4_5g22031 Fragaria vesca
FvH4_6g04840 Fragaria vesca
FvH4_6g04860 Fragaria vesca
Glyma.03G242100 Glycine max
Glyma.03G242200 Glycine max
Glyma.04G201500 Glycine max
Glyma.06G163800 Glycine max
Glyma.08G007500 Glycine max
Glyma.13G150400 Glycine max
Glyma.19G239500 Glycine max
Gohir.A03G056100 Gossypium hirsutum
Gohir.A09G247900 Gossypium hirsutum
Gohir.A11G038600 Gossypium hirsutum
Gohir.A13G099900 Gossypium hirsutum
Gohir.D03G110500 Gossypium hirsutum
Gohir.D09G248700 Gossypium hirsutum
Gohir.D11G041900 Gossypium hirsutum
Gohir.D13G103300 Gossypium hirsutum
Gorai.003G116900 Gossypium raimondii
Gorai.006G273100 Gossypium raimondii
Gorai.007G045000 Gossypium raimondii
Gorai.013G115800 Gossypium raimondii
Gorai.013G115900 Gossypium raimondii
GSVIVG01008648001 Vitis vinifera
GSVIVG01010056001 Vitis vinifera
GSVIVG01013313001 Vitis vinifera
GSVIVG01021986001 Vitis vinifera
GSVIVG01021992001 Vitis vinifera
GSVIVG01021994001 Vitis vinifera
GSVIVG01021995001 Vitis vinifera
GSVIVG01021997001 Vitis vinifera
GSVIVG01022002001 Vitis vinifera
GSVIVG01022003001 Vitis vinifera
GSVIVG01034533001 Vitis vinifera
HanXRQChr05g0155391 Helianthus annuus
HanXRQChr09g0254871 Helianthus annuus
HanXRQChr09g0273831 Helianthus annuus
HanXRQChr10g0316021 Helianthus annuus
HanXRQChr15g0485321 Helianthus annuus
HanXRQChr15g0485331 Helianthus annuus
HanXRQChr15g0485341 Helianthus annuus
Haze_04269 Corylus avellana
Haze_04271 Corylus avellana
Haze_04272 Corylus avellana
Haze_07097 Corylus avellana
Hma1.2p1_0702F.1_g206110 Hydrangea macrophylla
Hma1.2p1_2912F.1_g330220 Hydrangea macrophylla
HPP92_020111 Vanilla planifolia
Hund21671 Selenicereus undatus
Lalb_Chr07g0183821 Lupinus albus
Lalb_Chr13g0296951 Lupinus albus
Lalb_Chr18g0045331 Lupinus albus
Lj1g0022507 Lotus japonicus
Lj4g0000743 Lotus japonicus
Lj5A87G66 Lonicera japonica
Lj7A484T31 Lonicera japonica
Lj7C484G3 Lonicera japonica
Lj9A487T48 Lonicera japonica
Lj9A676T58 Lonicera japonica
Lsat_1_v5_gn_1_30260 Lactuca sativa
Lsat_1_v5_gn_4_140940 Lactuca sativa
Lsat_1_v5_gn_4_84480 Lactuca sativa
Lsat_1_v5_gn_5_10060 Lactuca sativa
Manes.06G126900 Manihot esculenta
Manes.08G125011 Manihot esculenta
Manes.14G044800 Manihot esculenta
Mapoly0109s0037 Marchantia polymorpha
MBI10_g42607_MAGBIO Magnolia biondii
MBI18_g04708_MAGBIO Magnolia biondii
MD06G1130500 Malus domestica
MD12G1227600 Malus domestica
MD12G1227900 Malus domestica
MD12G1228100 Malus domestica
MD12G1228200 Malus domestica
MD12G1228300 Malus domestica
MD14G1147300 Malus domestica
Medtr1g048160 Medicago truncatula
Medtr3g110052 Medicago truncatula
Medtr7g114100 Medicago truncatula
Medtr7g114130 Medicago truncatula
Medtr8g096190 Medicago truncatula
MELO3C003911.2 Cucumis melo
MELO3C005926.2 Cucumis melo
MELO3C033894.2 Cucumis melo
Migut.D01183 Erythranthe guttata
Migut.H02535 Erythranthe guttata
MSTRG.4645 Avicennia marina
Nitab4.5_0000976g0030 Nicotiana tabacum
Nitab4.5_0001841g0070 Nicotiana tabacum
Nitab4.5_0005097g0040 Nicotiana tabacum
Nitab4.5_0008257g0020 Nicotiana tabacum
Nitab4.5_0010249g0010 Nicotiana tabacum
Nn3g16275 Nelumbo nucifera
Nn3g21253 Nelumbo nucifera
Nn4g22132 Nelumbo nucifera
Nn4g26065 Nelumbo nucifera
Oeu023318.1 Olea europaea
Oeu046605.2 Olea europaea
Os02g0521300 Oryza sativa ssp. japonica
Os05g0373300 Oryza sativa ssp. japonica
Os08g0133200 Oryza sativa ssp. japonica
Peaxi162Scf00207g00143 Petunia axillaris
Peaxi162Scf00314g00627 Petunia axillaris
PGR042G1880 Punica granatum
PGR083G0590 Punica granatum
PGR083G0952 Punica granatum
Phvul.002G281400 Phaseolus vulgaris
Phvul.006G096100 Phaseolus vulgaris
Phvul.006G096200 Phaseolus vulgaris
Phvul.009G161100 Phaseolus vulgaris
Potri.003G055501 Populus trichocarpa
Potri.012G108200 Populus trichocarpa
Potri.013G029100 Populus trichocarpa
Potri.015G106400 Populus trichocarpa
Pp3c6_15920 Physcomitrium patens
PRCOL_00002683 Prasinoderma coloniale
Prupe.5G141800 Prunus persica
Prupe.6G333400 Prunus persica
Psat3g009160 Pisum sativum
Psat3g009200 Pisum sativum
Psat7g039480 Pisum sativum
PSO017G6660 Papaver somniferum
PSO170G0478 Papaver somniferum
PSO170G3733 Papaver somniferum
PSO170G5326 Papaver somniferum
PSO170G6006 Papaver somniferum
PSO210G6110 Papaver somniferum
PSO407G0136 Papaver somniferum
PSO407G0323 Papaver somniferum
PSO478G3695 Papaver somniferum
PSO832G1009 Papaver somniferum
PSO837G0024 Papaver somniferum
QL03p002977 Quercus lobata
QL03p003063 Quercus lobata
QL03p003112 Quercus lobata
QL03p003312 Quercus lobata
QL03p053454 Quercus lobata
QL03p060617 Quercus lobata
QL03p060646 Quercus lobata
QL03p060732 Quercus lobata
QL03p061144 Quercus lobata
QL09p022652 Quercus lobata
QL10p000483 Quercus lobata
RcHm_v2.0_Chr2g0128501 Rosa chinensis
RcHm_v2.0_Chr2g0129101 Rosa chinensis
RcHm_v2.0_Chr3g0453331 Rosa chinensis
RcHm_v2.0_Chr3g0453381 Rosa chinensis
RcHm_v2.0_Chr3g0453391 Rosa chinensis
RcHm_v2.0_Chr3g0453401 Rosa chinensis
RcHm_v2.0_Chr4g0410921 Rosa chinensis
RcHm_v2.0_Chr7g0188701 Rosa chinensis
Rhsim01G0171100 Rhododendron simsii
Rhsim05G0146700 Rhododendron simsii
Rhsim07G0190900 Rhododendron simsii
Rhsim08G0197500 Rhododendron simsii
Sabra13G0029400 Salix brachista
Sabra15G0126500 Salix brachista
SalBow1G8623 Salvia bowleyana
SalBow8G3239 Salvia bowleyana
Sc04g0000190 Simmondsia chinensis
Sc09g0003590 Simmondsia chinensis
Sed0005283 Sechium edule
Sed0016636 Sechium edule
Sed0017905 Sechium edule
Sed0021772 Sechium edule
Sed0026281 Sechium edule
SEGI_36341 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38545 Striga asiatica
SGA_v2.0_scaffold51G18832 Striga asiatica
SMO167G0068 Selaginella moellendorffii
SMO203G0137 Selaginella moellendorffii
Solyc03g118200.4 Solanum lycopersicum
Solyc06g068840.3 Solanum lycopersicum
Solyc10g045500.3 Solanum lycopersicum
Solyc10g045510.1 Solanum lycopersicum
Solyc10g045520.2 Solanum lycopersicum
Solyc10g045525.1 Solanum lycopersicum
Sopen03g037120 Solanum pennellii
Sopen06g026110 Solanum pennellii
Sp1g07500 Schrenkiella parvula
Sp2g25090 Schrenkiella parvula
Sp6g35590 Schrenkiella parvula
TAR362G0779 Trochodendron aralioides
TAR362G1224 Trochodendron aralioides
TAR371G1267 Trochodendron aralioides
TAR629G0068 Trochodendron aralioides
TAR633G1584 Trochodendron aralioides
THA.LOC104804658 Tarenaya hassleriana
THA.LOC104818282 Tarenaya hassleriana
THA.LOC104821056 Tarenaya hassleriana
Thecc.03G140600 Theobroma cacao
Thecc.05G250400 Theobroma cacao
Thecc.05G250500 Theobroma cacao
Thhalv10003523m.g Eutrema salsugineum
Thhalv10007173m.g Eutrema salsugineum
Thhalv10012927m.g Eutrema salsugineum
TPR.G10906 Trifolium pratense
TPR.G12756 Trifolium pratense
TPR.G16982 Trifolium pratense
TPR.G21783 Trifolium pratense
TPR.G6937 Trifolium pratense
TPR.G6947 Trifolium pratense
TPR.G7008 Trifolium pratense
TWI23G0492 Tripterygium wilfordii
TWI36G1231 Tripterygium wilfordii
unitig_0.g347 Utricularia gibba
vmacro05052 Vaccinium macrocarpon
vmacro16755 Vaccinium macrocarpon
vmacro19184 Vaccinium macrocarpon
vmacro19658 Vaccinium macrocarpon
vmacro19659 Vaccinium macrocarpon
VMungo0197G0001 Vigna mungo
VMungo0251G3692 Vigna mungo
VMungo1309G0299 Vigna mungo
Zm00001eb242080 Zea mays
Zm00001eb285200 Zea mays

User provided reference genes

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