Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p05720 Brassica napus
A04p08800 Brassica napus
A06p05630 Brassica napus
A08p07010 Brassica napus
Aa31LG8G11170 Aethionema arabicum
Aa31LG9G4400 Aethionema arabicum
Aa31sc20G220 Aethionema arabicum
Aa31sc91G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1896 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.364 Anthoceros agrestis
Actinidia07417 Actinidia chinensis
Actinidia09409 Actinidia chinensis
Actinidia13292 Actinidia chinensis
Actinidia13858 Actinidia chinensis
Actinidia20344 Actinidia chinensis
Actinidia32689 Actinidia chinensis
Actinidia37838 Actinidia chinensis
Ah.12g062060 Amaranthus hybridus
Ah.12g063080 Amaranthus hybridus
Ah.14g081670 Amaranthus hybridus
Ah.14g081680 Amaranthus hybridus
AL1G19130 Arabidopsis lyrata
AL7G19130 Arabidopsis lyrata
AL9U10310 Arabidopsis lyrata
Aqoxy2G00065 Aquilegia oxysepala
Aqoxy7G01811 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.15P38C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.61QI09 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.73LV1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7CLK78 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y5LKUA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZV0YIE Arachis hypogaea
AT1G08680 Arabidopsis thaliana
AT4G13350 Arabidopsis thaliana
AT4G32630 Arabidopsis thaliana
ATR0037G054 Amborella trichopoda
ATR0068G023 Amborella trichopoda
Atru.chr2.1577 Acer truncatum
Atru.chr7.1313 Acer truncatum
Atru.chr7.2316 Acer truncatum
AUR62011015 Chenopodium quinoa
AUR62021526 Chenopodium quinoa
AUR62024828 Chenopodium quinoa
AUR62032387 Chenopodium quinoa
AUR62036504 Chenopodium quinoa
AUR62037071 Chenopodium quinoa
BcaB03g16092 Brassica carinata
BcaB07g34108 Brassica carinata
BcaC02g09433 Brassica carinata
BcaC05g24796 Brassica carinata
BcaC07g37377 Brassica carinata
BcaC09g52056 Brassica carinata
BcaNung06955 Brassica carinata
BolC1t00628H Brassica oleracea
BolC4t25833H Brassica oleracea
BolC5t29437H Brassica oleracea
BolC8t47683H Brassica oleracea
BraA01t00542Z Brassica rapa
BraA04t16573Z Brassica rapa
BraA06t23772Z Brassica rapa
BraA08t32710Z Brassica rapa
C01p06300 Brassica napus
C04p42690 Brassica napus
C05p06780 Brassica napus
C08p08300 Brassica napus
CAN.G679.10 Capsicum annuum
CAN.G713.33 Capsicum annuum
CAN.G749.3 Capsicum annuum
CAN.G959.43 Capsicum annuum
CANSAT54G0023 Cannabis sativa
CANSAT56G0530 Cannabis sativa
CANSAT56G1349 Cannabis sativa
CANSAT78G1522 Cannabis sativa
CARHR008610 Cardamine hirsuta
CARHR218900 Cardamine hirsuta
CARHR240600 Cardamine hirsuta
Carub.0001s0804 Capsella rubella
Carub.0007s0791 Capsella rubella
Carub.0007s2923 Capsella rubella
Ca_04457_v3 Cicer arietinum L.
Ca_12905_v3 Cicer arietinum L.
Ca_25439_v3 Cicer arietinum L.
Ca_25517_v3 Cicer arietinum L.
CBR_g21816 Chara braunii
Cc00_g04900 Coffea canephora
Cc06_g09450 Coffea canephora
Cc08_g08250 Coffea canephora
CDE02G1040 Ceratophyllum demersum
CDE04G0677 Ceratophyllum demersum
CDE06G2637 Ceratophyllum demersum
CDE07G1079 Ceratophyllum demersum
CDE08G1382 Ceratophyllum demersum
CDE09G0794 Ceratophyllum demersum
Cfa003281 Carpinus fangiana
Cfa013220 Carpinus fangiana
Ciclev10007554m.g Citrus clementina
Ciclev10010498m.g Citrus clementina
Ciclev10030836m.g Citrus clementina
CiPaw.03G234400 Carya illinoinensis
CiPaw.04G166600 Carya illinoinensis
CiPaw.07G217000 Carya illinoinensis
CiPaw.08G016300 Carya illinoinensis
CiPaw.10G124600 Carya illinoinensis
ClCG05G017250 Citrullus lanatus
ClCG10G016700 Citrullus lanatus
ClCG11G002590 Citrullus lanatus
COL.COLO4_24073 Corchorus olitorius
COL.COLO4_30345 Corchorus olitorius
COL.COLO4_34887 Corchorus olitorius
COL.COLO4_38560 Corchorus olitorius
Cpa.g.sc205.35 Carica papaya
Cpa.g.sc23.124 Carica papaya
Cpa.g.sc73.19 Carica papaya
Cpa.g.sc91.2 Carica papaya
Cre06.g302900 Chlamydomonas reinhardtii
CsaV3_2G002390 Cucumis sativus L.
CsaV3_3G039660 Cucumis sativus L.
CsaV3_3G046730 Cucumis sativus L.
CSS0011204 Camellia sinensis var. sinensis
CSS0012476 Camellia sinensis var. sinensis
CSS0017855 Camellia sinensis var. sinensis
CSS0032954 Camellia sinensis var. sinensis
CSS0033969 Camellia sinensis var. sinensis
CSS0034517 Camellia sinensis var. sinensis
CSS0038503 Camellia sinensis var. sinensis
CSS0043534 Camellia sinensis var. sinensis
CSS0046561 Camellia sinensis var. sinensis
CSS0049489 Camellia sinensis var. sinensis
DCAR_001495 Daucus carota
DCAR_006260 Daucus carota
DCAR_009088 Daucus carota
DCAR_013499 Daucus carota
DCAR_017829 Daucus carota
DCAR_024706 Daucus carota
DCAR_031958 Daucus carota
Dinv30218 Davidia involucrata
Dinv30219 Davidia involucrata
Dinv30523 Davidia involucrata
Dinv35876 Davidia involucrata
Dinv36609 Davidia involucrata
Dinv37037 Davidia involucrata
Dinv41584 Davidia involucrata
Duzib106G0268 Durio zibethinus
Duzib128G0706 Durio zibethinus
Duzib150G0759 Durio zibethinus
Duzib168G2108 Durio zibethinus
Duzib187G0293 Durio zibethinus
ECA234G0831 Erigeron canadensis
ECA236G0736 Erigeron canadensis
ECA240G0084 Erigeron canadensis
EL10Ac2g02531 Beta vulgaris
EL10Ac8g18522 Beta vulgaris
EL10Ac8g19573 Beta vulgaris
EL10Ac9g21591 Beta vulgaris
Eucgr.A01700 Eucalyptus grandis
Eucgr.C01068 Eucalyptus grandis
Eucgr.K01548 Eucalyptus grandis
FAN15G0311 Fragaria x ananassa
FAN19G0712 Fragaria x ananassa
FAN19G0786 Fragaria x ananassa
FAN20G2175 Fragaria x ananassa
FAN23G2212 Fragaria x ananassa
FAN24G0293 Fragaria x ananassa
FAN26G1169 Fragaria x ananassa
FAN26G1470 Fragaria x ananassa
FAN26G2075 Fragaria x ananassa
FAN27G0132 Fragaria x ananassa
FAN28G0104 Fragaria x ananassa
FAN28G1375 Fragaria x ananassa
FvH4_1g05240 Fragaria vesca
FvH4_1g29630 Fragaria vesca
FvH4_2g30220 Fragaria vesca
Glyma.03G006000 Glycine max
Glyma.05G088000 Glycine max
Glyma.05G232200 Glycine max
Glyma.07G088500 Glycine max
Glyma.08G039600 Glycine max
Glyma.09G188300 Glycine max
Glyma.14G129900 Glycine max
Glyma.17G203600 Glycine max
Glyma.19G067400 Glycine max
Glyma.19G120051 Glycine max
Gohir.A05G011100 Gossypium hirsutum
Gohir.A05G021800 Gossypium hirsutum
Gohir.A06G048300 Gossypium hirsutum
Gohir.A06G060900 Gossypium hirsutum
Gohir.A08G240700 Gossypium hirsutum
Gohir.A09G083901 Gossypium hirsutum
Gohir.A11G224206 Gossypium hirsutum
Gohir.A11G300500 Gossypium hirsutum
Gohir.D05G011800 Gossypium hirsutum
Gohir.D05G023400 Gossypium hirsutum
Gohir.D06G048300 Gossypium hirsutum
Gohir.D06G059300 Gossypium hirsutum
Gohir.D08G261400 Gossypium hirsutum
Gohir.D09G083700 Gossypium hirsutum
Gohir.D11G237800 Gossypium hirsutum
Gohir.D11G315300 Gossypium hirsutum
Gorai.004G279500 Gossypium raimondii
Gorai.006G099600 Gossypium raimondii
Gorai.006G099700 Gossypium raimondii
Gorai.007G251300 Gossypium raimondii
Gorai.007G346500 Gossypium raimondii
Gorai.009G012100 Gossypium raimondii
Gorai.009G023500 Gossypium raimondii
Gorai.010G054100 Gossypium raimondii
Gorai.010G069100 Gossypium raimondii
GSVIVG01015419001 Vitis vinifera
GSVIVG01017129001 Vitis vinifera
GSVIVG01029915001 Vitis vinifera
GSVIVG01035737001 Vitis vinifera
HanXRQChr03g0061951 Helianthus annuus
HanXRQChr04g0125501 Helianthus annuus
HanXRQChr06g0178091 Helianthus annuus
HanXRQChr09g0239781 Helianthus annuus
HanXRQChr09g0239801 Helianthus annuus
HanXRQChr10g0317821 Helianthus annuus
Haze_20375 Corylus avellana
Haze_21635 Corylus avellana
Haze_25691 Corylus avellana
Hma1.2p1_0018F.1_g013230 Hydrangea macrophylla
Hma1.2p1_0165F.1_g073400 Hydrangea macrophylla
Hma1.2p1_0175F.1_g077322 Hydrangea macrophylla
Hma1.2p1_0175F.1_g077324 Hydrangea macrophylla
Hma1.2p1_1215F.1_g267620 Hydrangea macrophylla
HPP92_002910 Vanilla planifolia
HPP92_002911 Vanilla planifolia
HPP92_005546 Vanilla planifolia
Hund09192 Selenicereus undatus
Hund25655 Selenicereus undatus
Hund26136 Selenicereus undatus
Lalb_Chr02g0157591 Lupinus albus
Lalb_Chr05g0222691 Lupinus albus
Lalb_Chr06g0174161 Lupinus albus
Lalb_Chr08g0243741 Lupinus albus
Lalb_Chr08g0243751 Lupinus albus
Lalb_Chr09g0331141 Lupinus albus
Lalb_Chr14g0371371 Lupinus albus
Lalb_Chr22g0352941 Lupinus albus
Lj2A416G33 Lonicera japonica
Lj2g0022086 Lotus japonicus
Lj2g0023387 Lotus japonicus
Lj4g0011940 Lotus japonicus
Lj5g0013721 Lotus japonicus
Lj7A646G40 Lonicera japonica
Lj7A646G41 Lonicera japonica
Lj7A711G47 Lonicera japonica
Lj7A711T50 Lonicera japonica
Lj8A609T42 Lonicera japonica
Lsat_1_v5_gn_1_125940 Lactuca sativa
Lsat_1_v5_gn_3_80100 Lactuca sativa
Lsat_1_v5_gn_5_1000 Lactuca sativa
Lsat_1_v5_gn_7_42361 Lactuca sativa
Lsat_1_v5_gn_8_83661 Lactuca sativa
Manes.03G067000 Manihot esculenta
Manes.08G150600 Manihot esculenta
Manes.09G135500 Manihot esculenta
Manes.16G068700 Manihot esculenta
Manes.16G070500 Manihot esculenta
Mapoly0032s0108 Marchantia polymorpha
MBI01_g16636_MAGBIO Magnolia biondii
MBI02_g07510_MAGBIO Magnolia biondii
MBI04_g40088_MAGBIO Magnolia biondii
MBI19_g30306_MAGBIO Magnolia biondii
MBI19_g32310_MAGBIO Magnolia biondii
MBI19_g40248_MAGBIO Magnolia biondii
MCO11G774 Micromonas commoda
MD02G1063100 Malus domestica
MD08G1135500 Malus domestica
MD12G1014100 Malus domestica
MD14G1011500 Malus domestica
MD15G1114500 Malus domestica
MD15G1188600 Malus domestica
Medtr1g010280 Medicago truncatula
Medtr4g025560 Medicago truncatula
Medtr6g027300 Medicago truncatula
Medtr6g086630 Medicago truncatula
Medtr8g103750 Medicago truncatula
MELO3C003662.2 Cucumis melo
MELO3C004547.2 Cucumis melo
MELO3C009707.2 Cucumis melo
Migut.A00267 Erythranthe guttata
Migut.J01581 Erythranthe guttata
Migut.K00184 Erythranthe guttata
Migut.K00462 Erythranthe guttata
Migut.L00406 Erythranthe guttata
MSTRG.10681 Avicennia marina
MSTRG.19757 Avicennia marina
MSTRG.6272 Avicennia marina
Nitab4.5_0000123g0070 Nicotiana tabacum
Nitab4.5_0000125g0400 Nicotiana tabacum
Nitab4.5_0001672g0150 Nicotiana tabacum
Nitab4.5_0005047g0020 Nicotiana tabacum
Nitab4.5_0007999g0030 Nicotiana tabacum
Nitab4.5_0009945g0030 Nicotiana tabacum
Nn2g11804 Nelumbo nucifera
Nn2g14730 Nelumbo nucifera
Nn8g39251 Nelumbo nucifera
Oeu018265.1 Olea europaea
Oeu023032.1 Olea europaea
Oeu027163.1 Olea europaea
Oeu027164.1 Olea europaea
Oeu044219.1 Olea europaea
Oeu045172.1 Olea europaea
Oeu048662.2 Olea europaea
Os01g0813900 Oryza sativa ssp. japonica
Os02g0208900 Oryza sativa ssp. japonica
Os03g0323500 Oryza sativa ssp. japonica
Os05g0534800 Oryza sativa ssp. japonica
Peaxi162Scf00003g05391 Petunia axillaris
Peaxi162Scf00105g01225 Petunia axillaris
Peaxi162Scf00546g00325 Petunia axillaris
Peaxi162Scf00560g00513 Petunia axillaris
PGR044G0999 Punica granatum
PGR142G2142 Punica granatum
PGR142G2361 Punica granatum
PGSC0003DMG400000322 Solanum tuberosum
PGSC0003DMG400007207 Solanum tuberosum
PGSC0003DMG400014483 Solanum tuberosum
Phvul.001G056000 Phaseolus vulgaris
Phvul.002G314400 Phaseolus vulgaris
Phvul.002G314500 Phaseolus vulgaris
Phvul.004G052500 Phaseolus vulgaris
Potri.006G246100 Populus trichocarpa
Potri.013G068300 Populus trichocarpa
Potri.018G035000 Populus trichocarpa
Potri.018G076200 Populus trichocarpa
Pp3c10_10670 Physcomitrium patens
Pp3c14_22720 Physcomitrium patens
Pp3c1_39920 Physcomitrium patens
Pp3c1_70 Physcomitrium patens
Pp3c2_28440 Physcomitrium patens
PRCOL_00005201 Prasinoderma coloniale
Prupe.1G466000 Prunus persica
Prupe.7G026600 Prunus persica
Prupe.7G227900 Prunus persica
Psat1g039840 Pisum sativum
Psat1g088560 Pisum sativum
Psat6g031160 Pisum sativum
Psat7g014040 Pisum sativum
PSO063G5179 Papaver somniferum
PSO210G5730 Papaver somniferum
PSO210G6127 Papaver somniferum
PSO541G0531 Papaver somniferum
PSO675G2600 Papaver somniferum
PSO782G3465 Papaver somniferum
QL02p085888 Quercus lobata
QL07p016355 Quercus lobata
QL07p016401 Quercus lobata
QL12p031169 Quercus lobata
RcHm_v2.0_Chr2g0090971 Rosa chinensis
RcHm_v2.0_Chr3g0495661 Rosa chinensis
RcHm_v2.0_Chr6g0312661 Rosa chinensis
Rhsim02G0186900 Rhododendron simsii
Rhsim03G0045400 Rhododendron simsii
Rhsim03G0244400 Rhododendron simsii
Sabra06G0192600 Salix brachista
Sabra13G0059600 Salix brachista
Sabra18G0035800 Salix brachista
Sabra18G0064900 Salix brachista
SalBow1G0918 Salvia bowleyana
SalBow1G5635 Salvia bowleyana
SalBow1G7355 Salvia bowleyana
SalBow2G0895 Salvia bowleyana
SalBow4G3273 Salvia bowleyana
SalBow6G5163 Salvia bowleyana
Sc08g0007330 Simmondsia chinensis
Sc18g0001100 Simmondsia chinensis
Sc23g0005800 Simmondsia chinensis
Sc23g0005810 Simmondsia chinensis
Sed0000587 Sechium edule
Sed0000855 Sechium edule
Sed0021010 Sechium edule
Sed0023292 Sechium edule
SEGI_01593 Sequoiadendron giganteum
SEGI_02777 Sequoiadendron giganteum
SEGI_32372 Sequoiadendron giganteum
SGA_v2.0_scaffold106G30577 Striga asiatica
SGA_v2.0_scaffold109G31040 Striga asiatica
SGA_v2.0_scaffold240G44154 Striga asiatica
SGA_v2.0_scaffold27G11504 Striga asiatica
SHI02629 Sapria himalayana
SHI14842 Sapria himalayana
SMO351G0452 Selaginella moellendorffii
Solyc08g067930.4 Solanum lycopersicum
Solyc10g076990.3 Solanum lycopersicum
Solyc12g006990.2 Solanum lycopersicum
Sopen08g021840 Solanum pennellii
Sopen10g028670 Solanum pennellii
Sopen12g002950 Solanum pennellii
Sp1g07340 Schrenkiella parvula
Sp7g10920 Schrenkiella parvula
Sp7g30400 Schrenkiella parvula
TAR383G0599 Trochodendron aralioides
TAR586G0001 Trochodendron aralioides
TAR586G0002 Trochodendron aralioides
TAR624G0085 Trochodendron aralioides
TAR636G1076 Trochodendron aralioides
TAR636G2605 Trochodendron aralioides
THA.LOC104804514 Tarenaya hassleriana
THA.LOC104808754 Tarenaya hassleriana
THA.LOC104821335 Tarenaya hassleriana
THA.LOC104823770 Tarenaya hassleriana
Thecc.05G237700 Theobroma cacao
Thecc.06G084200 Theobroma cacao
Thecc.09G113500 Theobroma cacao
Thecc.09G143600 Theobroma cacao
Thhalv10007026m.g Eutrema salsugineum
Thhalv10024655m.g Eutrema salsugineum
Thhalv10024713m.g Eutrema salsugineum
TPR.G21675 Trifolium pratense
TPR.G33939 Trifolium pratense
TPR.G38992 Trifolium pratense
TWI32G0814 Tripterygium wilfordii
TWI32G1313 Tripterygium wilfordii
TWI34G1393 Tripterygium wilfordii
TWI34G1746 Tripterygium wilfordii
TWI60G0413 Tripterygium wilfordii
TWI63G1217 Tripterygium wilfordii
unitig_0.g2729 Utricularia gibba
unitig_37.g12222 Utricularia gibba
vmacro06202 Vaccinium macrocarpon
vmacro07632 Vaccinium macrocarpon
vmacro11110 Vaccinium macrocarpon
vmacro20662 Vaccinium macrocarpon
VMungo0251G3166 Vigna mungo
VMungo0251G3488 Vigna mungo
VMungo0331G1876 Vigna mungo
VMungo0464G1186 Vigna mungo
VMungo0647G2223 Vigna mungo
Zm00001eb015390 Zea mays
Zm00001eb087140 Zea mays
Zm00001eb091340 Zea mays
Zm00001eb114590 Zea mays
Zm00001eb149950 Zea mays
Zm00001eb205450 Zea mays
Zm00001eb240400 Zea mays
Zm00001eb293940 Zea mays

User provided reference genes

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