Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p07800 Brassica napus
A03p12300 Brassica napus
A08p36950 Brassica napus
A09p20330 Brassica napus
A10p02850 Brassica napus
A10p14060 Brassica napus
A10p15920 Brassica napus
Aa31LG11G100 Aethionema arabicum
Aa31LG1G20470 Aethionema arabicum
Aa31LG3G12540 Aethionema arabicum
Aa31LG5G3780 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2801 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1423 Anthoceros agrestis
Actinidia01844 Actinidia chinensis
Actinidia04445 Actinidia chinensis
Actinidia06726 Actinidia chinensis
Actinidia12171 Actinidia chinensis
Actinidia18552 Actinidia chinensis
Actinidia22776 Actinidia chinensis
Actinidia22830 Actinidia chinensis
Actinidia22831 Actinidia chinensis
Actinidia39903 Actinidia chinensis
Actinidia40052 Actinidia chinensis
Ah.04g163570 Amaranthus hybridus
Ah.05g173490 Amaranthus hybridus
AL1G14020 Arabidopsis lyrata
AL8G17050 Arabidopsis lyrata
AL8G32550 Arabidopsis lyrata
AL8G34430 Arabidopsis lyrata
Aqoxy1G01089 Aquilegia oxysepala
Aqoxy2G03646 Aquilegia oxysepala
Aqoxy5G03855 Aquilegia oxysepala
Aqoxy5G03856 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1WBZ5F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A3GNNU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AAGX57 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BA27WC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GYV5V7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H0GHKL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JN2MSV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KK1LN5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L8NP09 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WNG3H8 Arachis hypogaea
AT1G04410 Arabidopsis thaliana
AT5G43330 Arabidopsis thaliana
AT5G56720 Arabidopsis thaliana
AT5G58330 Arabidopsis thaliana
ATR0043G006 Amborella trichopoda
ATR0295G001 Amborella trichopoda
ATR0317G036 Amborella trichopoda
ATR0317G100 Amborella trichopoda
ATR0317G129 Amborella trichopoda
Atru.chr12.894 Acer truncatum
Atru.chr4.2061 Acer truncatum
Atru.chr5.206 Acer truncatum
AUR62002137 Chenopodium quinoa
AUR62004145 Chenopodium quinoa
AUR62013706 Chenopodium quinoa
AUR62015572 Chenopodium quinoa
AUR62032001 Chenopodium quinoa
AUR62041526 Chenopodium quinoa
AUR62041538 Chenopodium quinoa
AUR62042811 Chenopodium quinoa
BcaB01g01470 Brassica carinata
BcaB01g04530 Brassica carinata
BcaB02g07794 Brassica carinata
BcaB05g22292 Brassica carinata
BcaB05g22421 Brassica carinata
BcaB07g31016 Brassica carinata
BcaB08g36066 Brassica carinata
BcaB08g36170 Brassica carinata
BcaC03g14105 Brassica carinata
BcaC04g19877 Brassica carinata
BcaC04g20059 Brassica carinata
BcaC04g21930 Brassica carinata
BcaC07g36909 Brassica carinata
BolC2t06886H Brassica oleracea
BolC2t07456H Brassica oleracea
BolC3t13886H Brassica oleracea
BolC5t29041H Brassica oleracea
BolC8t46913H Brassica oleracea
BolC9t55474H Brassica oleracea
BolC9t57679H Brassica oleracea
BolC9t57877H Brassica oleracea
BolC9t59483H Brassica oleracea
BraA02t05853Z Brassica rapa
BraA03t10541Z Brassica rapa
BraA08t35595Z Brassica rapa
BraA09t37641Z Brassica rapa
BraA10t42552Z Brassica rapa
BraA10t43497Z Brassica rapa
BraA10t43632Z Brassica rapa
C02p09780 Brassica napus
C02p13440 Brassica napus
C03p14440 Brassica napus
C05p02600 Brassica napus
C08p01110 Brassica napus
C09p25710 Brassica napus
C09p48290 Brassica napus
C09p50210 Brassica napus
CAN.G1978.4 Capsicum annuum
CAN.G459.16 Capsicum annuum
CAN.G899.19 Capsicum annuum
CANSAT56G0361 Cannabis sativa
CANSAT78G0931 Cannabis sativa
CANSAT80G0264 Cannabis sativa
CARHR003000 Cardamine hirsuta
CARHR003750 Cardamine hirsuta
CARHR180350 Cardamine hirsuta
CARHR270470 Cardamine hirsuta
CARHR272140 Cardamine hirsuta
Carub.0001s0359 Capsella rubella
Carub.0008s0528 Capsella rubella
Carub.0008s1720 Capsella rubella
Carub.0008s1887 Capsella rubella
Ca_09866_v3 Cicer arietinum L.
Ca_10450_v3 Cicer arietinum L.
Ca_11985_v3 Cicer arietinum L.
Ca_23121_v3 Cicer arietinum L.
CBR_g16808 Chara braunii
CBR_g21187 Chara braunii
CBR_g3757 Chara braunii
CBR_g3760 Chara braunii
CBR_g39989 Chara braunii
CBR_g40671 Chara braunii
CBR_g48269 Chara braunii
CBR_g53743 Chara braunii
CBR_g87461 Chara braunii
Cc02_g10620 Coffea canephora
Cc02_g24520 Coffea canephora
Cc03_g05530 Coffea canephora
Cc06_g15830 Coffea canephora
CDE04G1258 Ceratophyllum demersum
CDE06G0229 Ceratophyllum demersum
CDE07G1119 Ceratophyllum demersum
CDE07G1457 Ceratophyllum demersum
Cfa001780 Carpinus fangiana
Cfa001781 Carpinus fangiana
Cfa011128 Carpinus fangiana
Cfa022957 Carpinus fangiana
Ciclev10005394m.g Citrus clementina
Ciclev10021075m.g Citrus clementina
Ciclev10031559m.g Citrus clementina
CiPaw.01G184800 Carya illinoinensis
CiPaw.01G265800 Carya illinoinensis
CiPaw.02G112300 Carya illinoinensis
CiPaw.02G170300 Carya illinoinensis
CiPaw.11G065700 Carya illinoinensis
CiPaw.13G030300 Carya illinoinensis
ClCG05G000310 Citrullus lanatus
ClCG05G021390 Citrullus lanatus
ClCG06G007000 Citrullus lanatus
COL.COLO4_12458 Corchorus olitorius
COL.COLO4_15876 Corchorus olitorius
COL.COLO4_32898 Corchorus olitorius
Cpa.g.c33425 Carica papaya
Cpa.g.sc44.59 Carica papaya
Cpa.g.sc706.3 Carica papaya
Cre02.g145800 Chlamydomonas reinhardtii
Cre09.g410700 Chlamydomonas reinhardtii
CsaV3_2G012760 Cucumis sativus L.
CsaV3_3G007460 Cucumis sativus L.
CsaV3_5G035850 Cucumis sativus L.
CSS0011240 Camellia sinensis var. sinensis
CSS0024273 Camellia sinensis var. sinensis
CSS0028096 Camellia sinensis var. sinensis
CSS0029572 Camellia sinensis var. sinensis
CSS0050119 Camellia sinensis var. sinensis
DCAR_006393 Daucus carota
DCAR_024250 Daucus carota
DCAR_027317 Daucus carota
DCAR_027318 Daucus carota
DCAR_031872 Daucus carota
DCAR_031873 Daucus carota
Dinv27052 Davidia involucrata
Dinv29859 Davidia involucrata
Dinv31253 Davidia involucrata
Dinv36366 Davidia involucrata
Dinv44103 Davidia involucrata
Duzib052G1181 Durio zibethinus
Duzib114G0776 Durio zibethinus
Duzib138G1134 Durio zibethinus
Duzib151G0651 Durio zibethinus
Duzib212G1012 Durio zibethinus
ECA233G0334 Erigeron canadensis
ECA234G0998 Erigeron canadensis
ECA240G1813 Erigeron canadensis
EL10Ac1g00814 Beta vulgaris
EL10Ac3g05006 Beta vulgaris
EL10As9g23933 Beta vulgaris
Eucgr.E01596 Eucalyptus grandis
Eucgr.E01599 Eucalyptus grandis
Eucgr.H03047 Eucalyptus grandis
Eucgr.J01037 Eucalyptus grandis
FAN01G0893 Fragaria x ananassa
FAN03G3480 Fragaria x ananassa
FAN06G2033 Fragaria x ananassa
FAN10G1604 Fragaria x ananassa
FAN11G3752 Fragaria x ananassa
FAN12G2741 Fragaria x ananassa
FAN16G3593 Fragaria x ananassa
FAN17G0338 Fragaria x ananassa
FAN21G1212 Fragaria x ananassa
FAN22G0433 Fragaria x ananassa
FvH4_3g14020 Fragaria vesca
FvH4_4g03630 Fragaria vesca
FvH4_7g06530 Fragaria vesca
Glyma.02G005500 Glycine max
Glyma.10G006500 Glycine max
Glyma.10G197700 Glycine max
Glyma.13G104800 Glycine max
Glyma.20G192200 Glycine max
Gohir.A02G039400 Gossypium hirsutum
Gohir.A05G409300 Gossypium hirsutum
Gohir.A09G204100 Gossypium hirsutum
Gohir.A10G111200 Gossypium hirsutum
Gohir.A12G096100 Gossypium hirsutum
Gohir.D02G045500 Gossypium hirsutum
Gohir.D04G006100 Gossypium hirsutum
Gohir.D09G197900 Gossypium hirsutum
Gohir.D12G098800 Gossypium hirsutum
Gorai.005G050200 Gossypium raimondii
Gorai.006G221400 Gossypium raimondii
Gorai.008G107500 Gossypium raimondii
Gorai.011G174200 Gossypium raimondii
Gorai.012G007300 Gossypium raimondii
GSVIVG01010395001 Vitis vinifera
GSVIVG01016172001 Vitis vinifera
GSVIVG01018190001 Vitis vinifera
GSVIVG01028330001 Vitis vinifera
GSVIVG01028332001 Vitis vinifera
HanXRQChr03g0091431 Helianthus annuus
HanXRQChr05g0138441 Helianthus annuus
HanXRQChr06g0183591 Helianthus annuus
HanXRQChr08g0218231 Helianthus annuus
HanXRQChr12g0367851 Helianthus annuus
HanXRQChr12g0367861 Helianthus annuus
HanXRQChr12g0368681 Helianthus annuus
HanXRQChr12g0368891 Helianthus annuus
HanXRQChr13g0421951 Helianthus annuus
HanXRQChr16g0519291 Helianthus annuus
Haze_02735 Corylus avellana
Haze_11379 Corylus avellana
Haze_16770 Corylus avellana
Haze_27067 Corylus avellana
Hma1.2p1_0086F.1_g044900 Hydrangea macrophylla
Hma1.2p1_0267F.1_g107270 Hydrangea macrophylla
Hma1.2p1_0992F.1_g245170 Hydrangea macrophylla
Hma1.2p1_2971F.1_g331080 Hydrangea macrophylla
HPP92_007446 Vanilla planifolia
HPP92_025781 Vanilla planifolia
Hund06761 Selenicereus undatus
Hund11891 Selenicereus undatus
Hund17066 Selenicereus undatus
Hund27388 Selenicereus undatus
Lalb_Chr02g0150121 Lupinus albus
Lalb_Chr02g0151061 Lupinus albus
Lalb_Chr03g0037221 Lupinus albus
Lalb_Chr06g0169961 Lupinus albus
Lalb_Chr07g0195631 Lupinus albus
Lalb_Chr07g0195641 Lupinus albus
Lalb_Chr21g0312041 Lupinus albus
Lj2A23T73 Lonicera japonica
Lj3C761G12 Lonicera japonica
Lj3g0023929 Lotus japonicus
Lj5g0000122 Lotus japonicus
Lj5g0006527 Lotus japonicus
Lj6A620T52 Lonicera japonica
Lj6g0025502 Lotus japonicus
Lj9A562G29 Lonicera japonica
Lj9A562T29 Lonicera japonica
Lsat_1_v5_gn_3_120581 Lactuca sativa
Lsat_1_v5_gn_4_43761 Lactuca sativa
Lsat_1_v5_gn_8_17481 Lactuca sativa
Manes.01G270900 Manihot esculenta
Manes.03G164100 Manihot esculenta
Manes.05G051000 Manihot esculenta
Manes.05G051100 Manihot esculenta
Manes.07G133100 Manihot esculenta
Manes.10G052600 Manihot esculenta
Manes.15G040800 Manihot esculenta
Mapoly0031s0108 Marchantia polymorpha
Mapoly0206s0010 Marchantia polymorpha
MBI04_g09515_MAGBIO Magnolia biondii
MBI10_g11258_MAGBIO Magnolia biondii
MBI19_g45280_MAGBIO Magnolia biondii
MCO09G650 Micromonas commoda
MCO16G043 Micromonas commoda
MD02G1243100 Malus domestica
MD05G1238800 Malus domestica
MD07G1073300 Malus domestica
MD07G1073600 Malus domestica
MD07G1263100 Malus domestica
MD09G1256600 Malus domestica
MD10G1216900 Malus domestica
MD13G1214000 Malus domestica
MD16G1219000 Malus domestica
Medtr1g043040 Medicago truncatula
Medtr1g076130 Medicago truncatula
Medtr1g090730 Medicago truncatula
Medtr8g005980 Medicago truncatula
MELO3C005968.2 Cucumis melo
MELO3C012389.2 Cucumis melo
MELO3C022998.2 Cucumis melo
MELO3C035566.2 Cucumis melo
Migut.F01686 Erythranthe guttata
Migut.G00518 Erythranthe guttata
Migut.N00269 Erythranthe guttata
Migut.N01763 Erythranthe guttata
MSTRG.4139 Avicennia marina
MSTRG.9133 Avicennia marina
MSTRG.9890 Avicennia marina
Nitab4.5_0000044g0330 Nicotiana tabacum
Nitab4.5_0000107g0180 Nicotiana tabacum
Nitab4.5_0000302g0160 Nicotiana tabacum
Nitab4.5_0000706g0160 Nicotiana tabacum
Nitab4.5_0001461g0060 Nicotiana tabacum
Nitab4.5_0001823g0020 Nicotiana tabacum
Nitab4.5_0002717g0040 Nicotiana tabacum
Nitab4.5_0004662g0030 Nicotiana tabacum
Nitab4.5_0005627g0050 Nicotiana tabacum
Nitab4.5_0007550g0010 Nicotiana tabacum
Nn1g00965 Nelumbo nucifera
Nn1g02758 Nelumbo nucifera
Nn1g05762 Nelumbo nucifera
Nn3g19101 Nelumbo nucifera
Nn3g19652 Nelumbo nucifera
Nn6g35211 Nelumbo nucifera
Nn8g40529 Nelumbo nucifera
Oeu007169.1 Olea europaea
Oeu011500.1 Olea europaea
Oeu023187.1 Olea europaea
Oeu035817.4 Olea europaea
Oeu059149.1 Olea europaea
Oeu060294.1 Olea europaea
Oeu061191.1 Olea europaea
Oeu061514.1 Olea europaea
Oeu063213.1 Olea europaea
Os04g0551200 Oryza sativa ssp. japonica
Os08g0562100 Oryza sativa ssp. japonica
Os10g0478200 Oryza sativa ssp. japonica
Peaxi162Scf00304g01349 Petunia axillaris
Peaxi162Scf00304g01351 Petunia axillaris
Peaxi162Scf00377g00069 Petunia axillaris
Peaxi162Scf00543g00421 Petunia axillaris
Peaxi162Scf01105g00217 Petunia axillaris
PGR004G2262 Punica granatum
PGR042G2489 Punica granatum
PGR044G1963 Punica granatum
PGSC0003DMG400017170 Solanum tuberosum
PGSC0003DMG400026029 Solanum tuberosum
PGSC0003DMG400031063 Solanum tuberosum
Phvul.004G103100 Phaseolus vulgaris
Phvul.007G140600 Phaseolus vulgaris
Phvul.007G273500 Phaseolus vulgaris
Phvul.010G055700 Phaseolus vulgaris
Potri.002G141700 Populus trichocarpa
Potri.002G141900 Populus trichocarpa
Potri.008G031700 Populus trichocarpa
Potri.008G166800 Populus trichocarpa
Potri.010G071000 Populus trichocarpa
Potri.010G230000 Populus trichocarpa
Pp3c14_16940 Physcomitrium patens
Pp3c17_20310 Physcomitrium patens
Pp3c1_40310 Physcomitrium patens
Pp3c21_10840 Physcomitrium patens
Pp3c2_2120 Physcomitrium patens
PRCOL_00004158 Prasinoderma coloniale
PRCOL_00004283 Prasinoderma coloniale
Prupe.1G039300 Prunus persica
Prupe.2G091600 Prunus persica
Prupe.4G127500 Prunus persica
Psat4g208760 Pisum sativum
Psat6g104960 Pisum sativum
Psat6g116160 Pisum sativum
Psat6g173040 Pisum sativum
Psat6g188720 Pisum sativum
PSO063G4310 Papaver somniferum
PSO063G4655 Papaver somniferum
PSO210G1074 Papaver somniferum
PSO339G2067 Papaver somniferum
PSO339G4466 Papaver somniferum
PSO384G0020 Papaver somniferum
PSO782G1653 Papaver somniferum
PSO832G4501 Papaver somniferum
QL01p053722 Quercus lobata
QL04p020375 Quercus lobata
QL04p035380 Quercus lobata
QL04p035387 Quercus lobata
QL04p035514 Quercus lobata
QL04p035524 Quercus lobata
QL04p035537 Quercus lobata
QL04p035545 Quercus lobata
QL04p035554 Quercus lobata
QL06p017937 Quercus lobata
QL08p053170 Quercus lobata
QL12p027355 Quercus lobata
QL12p027377 Quercus lobata
RcHm_v2.0_Chr1g0334961 Rosa chinensis
RcHm_v2.0_Chr4g0393011 Rosa chinensis
RcHm_v2.0_Chr5g0023331 Rosa chinensis
Rhsim02G0037400 Rhododendron simsii
Rhsim03G0111900 Rhododendron simsii
Rhsim07G0033100 Rhododendron simsii
Sabra02G0110500 Salix brachista
Sabra08G0020700 Salix brachista
Sabra08G0127300 Salix brachista
Sabra10G0036500 Salix brachista
SalBow3G0767 Salvia bowleyana
SalBow3G1141 Salvia bowleyana
SalBow3G2395 Salvia bowleyana
SalBow5G3911 Salvia bowleyana
SalBow6G5416 Salvia bowleyana
Sc09g0005860 Simmondsia chinensis
Sc13g0005470 Simmondsia chinensis
Sc26g0001350 Simmondsia chinensis
Sed0001566 Sechium edule
Sed0004705 Sechium edule
Sed0005345 Sechium edule
Sed0013606 Sechium edule
Sed0019032 Sechium edule
SEGI_02282 Sequoiadendron giganteum
SEGI_04139 Sequoiadendron giganteum
SEGI_07983 Sequoiadendron giganteum
SEGI_19625 Sequoiadendron giganteum
SEGI_23614 Sequoiadendron giganteum
SGA_v2.0_scaffold41G15740 Striga asiatica
SGA_v2.0_scaffold67G22744 Striga asiatica
SGA_v2.0_scaffold88G27254 Striga asiatica
SMO119G0510 Selaginella moellendorffii
SMO194G0027 Selaginella moellendorffii
SMO329G0018 Selaginella moellendorffii
Solyc03g071590.3 Solanum lycopersicum
Solyc09g090140.4 Solanum lycopersicum
Solyc11g007990.2 Solanum lycopersicum
Sopen01g036440 Solanum pennellii
Sopen03g019880 Solanum pennellii
Sopen09g033050 Solanum pennellii
Sopen11g003850 Solanum pennellii
Sp1g03230 Schrenkiella parvula
Sp2g08140 Schrenkiella parvula
Sp6g18470 Schrenkiella parvula
Sp6g19990 Schrenkiella parvula
TAR362G0038 Trochodendron aralioides
TAR365G0310 Trochodendron aralioides
TAR369G1116 Trochodendron aralioides
TAR636G3047 Trochodendron aralioides
THA.LOC104801085 Tarenaya hassleriana
THA.LOC104806834 Tarenaya hassleriana
THA.LOC104808620 Tarenaya hassleriana
THA.LOC104824214 Tarenaya hassleriana
THA.LOC104826085 Tarenaya hassleriana
Thecc.01G386900 Theobroma cacao
Thecc.04G255200 Theobroma cacao
Thecc.10G088900 Theobroma cacao
Thhalv10003243m.g Eutrema salsugineum
Thhalv10003244m.g Eutrema salsugineum
Thhalv10009880m.g Eutrema salsugineum
Thhalv10013555m.g Eutrema salsugineum
Thhalv10013859m.g Eutrema salsugineum
TPR.G1500 Trifolium pratense
TPR.G25158 Trifolium pratense
TPR.G27273 Trifolium pratense
TPR.G29218 Trifolium pratense
TPR.G36568 Trifolium pratense
TPR.G37770 Trifolium pratense
TWI09G0596 Tripterygium wilfordii
TWI14G1055 Tripterygium wilfordii
TWI38G1270 Tripterygium wilfordii
TWI53G2054 Tripterygium wilfordii
unitig_26.g9462 Utricularia gibba
unitig_32.g10842 Utricularia gibba
unitig_748.g8309 Utricularia gibba
vmacro05239 Vaccinium macrocarpon
vmacro07197 Vaccinium macrocarpon
vmacro11491 Vaccinium macrocarpon
vmacro13465 Vaccinium macrocarpon
vmacro15442 Vaccinium macrocarpon
VMungo0331G0591 Vigna mungo
VMungo0720G0921 Vigna mungo
VMungo0720G2678 Vigna mungo
Zm00001eb038930 Zea mays
Zm00001eb045790 Zea mays
Zm00001eb074700 Zea mays
Zm00001eb221790 Zea mays
Zm00001eb304640 Zea mays

User provided reference genes

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