Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p04110 Brassica napus
A02p35360 Brassica napus
A03p08260 Brassica napus
A05p16210 Brassica napus
A06p14360 Brassica napus
A08p37730 Brassica napus
A10p00850 Brassica napus
A10p22100 Brassica napus
Aa31LG11G12380 Aethionema arabicum
Aa31LG1G10420 Aethionema arabicum
Aa31LG1G28200 Aethionema arabicum
Aa31LG7G2790 Aethionema arabicum
Aa31LG9G17650 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5574 Anthoceros agrestis
Actinidia01529 Actinidia chinensis
Actinidia17165 Actinidia chinensis
Actinidia19721 Actinidia chinensis
Actinidia20154 Actinidia chinensis
Actinidia28507 Actinidia chinensis
Actinidia28783 Actinidia chinensis
Actinidia35711 Actinidia chinensis
Actinidia40418 Actinidia chinensis
Ah.04g162960 Amaranthus hybridus
Ah.05g178860 Amaranthus hybridus
Ah.06g191580 Amaranthus hybridus
Ah.07g206530 Amaranthus hybridus
AL1G11460 Arabidopsis lyrata
AL1G30700 Arabidopsis lyrata
AL4G46300 Arabidopsis lyrata
AL6G28380 Arabidopsis lyrata
AL7G45670 Arabidopsis lyrata
Aqoxy3G04123 Aquilegia oxysepala
Aqoxy4G03168 Aquilegia oxysepala
Aqoxy7G00001_Aqoxy7G00002 Aquilegia oxysepala
Aqoxy7G00188 Aquilegia oxysepala
Aqoxy7G03772 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0U0SSW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6FS9GU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7MW9BK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.85WIHV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9UXU7A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GF54Z4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IB3UKS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J7VJ5I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NB83W5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P5534Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V5MJQ5 Arachis hypogaea
AT1G01060 Arabidopsis thaliana
AT1G18330 Arabidopsis thaliana
AT2G46830 Arabidopsis thaliana
AT3G10113 Arabidopsis thaliana
AT5G17300 Arabidopsis thaliana
AT5G37260 Arabidopsis thaliana
ATR0661G164 Amborella trichopoda
ATR0807G202 Amborella trichopoda
Atru.chr1.2156 Acer truncatum
Atru.chr5.787 Acer truncatum
Atru.chr5.788 Acer truncatum
Atru.chr9.1574 Acer truncatum
AUR62004570 Chenopodium quinoa
AUR62004765 Chenopodium quinoa
AUR62022683 Chenopodium quinoa
AUR62037488 Chenopodium quinoa
BcaB01g04946 Brassica carinata
BcaB01g05213 Brassica carinata
BcaB01g06139 Brassica carinata
BcaB05g23256 Brassica carinata
BcaB07g31844 Brassica carinata
BcaB08g36790 Brassica carinata
BcaC02g12626 Brassica carinata
BcaC03g18548 Brassica carinata
BcaC04g18809 Brassica carinata
BcaC05g25727 Brassica carinata
BcaC06g36494 Brassica carinata
BcaC06g36495 Brassica carinata
BcaC06g36496 Brassica carinata
BcaC07g37008 Brassica carinata
BcaC07g37009 Brassica carinata
BcaC07g37015 Brassica carinata
BcaC07g37016 Brassica carinata
BcaC08g44341 Brassica carinata
BolC2t06805H Brassica oleracea
BolC3t12576H Brassica oleracea
BolC3t13451H Brassica oleracea
BolC5t28872H Brassica oleracea
BolC5t30359H Brassica oleracea
BolC6t36972H Brassica oleracea
BolC7t40758H Brassica oleracea
BolC7t40759H Brassica oleracea
BolC7t40760H Brassica oleracea
BolC8t46805H Brassica oleracea
BolC9t58825H Brassica oleracea
BraA02t05374Z Brassica rapa
BraA03t10146Z Brassica rapa
BraA05t20532Z Brassica rapa
BraA06t24564Z Brassica rapa
BraA08t35670Z Brassica rapa
BraA10t42363Z Brassica rapa
BraA10t44269Z Brassica rapa
C02p08960 Brassica napus
C03p00110 Brassica napus
C05p00880 Brassica napus
C05p16600 Brassica napus
C06p17780 Brassica napus
C07p03620 Brassica napus
C07p03630 Brassica napus
C08p00050 Brassica napus
C08p00060 Brassica napus
C09p59890 Brassica napus
CAN.G1014.57 Capsicum annuum
CAN.G1021.21 Capsicum annuum
CAN.G1150.2 Capsicum annuum
CAN.G1150.3 Capsicum annuum
CAN.G269.10 Capsicum annuum
CAN.G419.23 Capsicum annuum
CAN.G542.8 Capsicum annuum
CANSAT01G0250 Cannabis sativa
CANSAT01G2527 Cannabis sativa
CANSAT56G1049 Cannabis sativa
CANSAT56G2016 Cannabis sativa
CARHR001420 Cardamine hirsuta
CARHR018900 Cardamine hirsuta
CARHR018910 Cardamine hirsuta
CARHR142170 Cardamine hirsuta
CARHR142180 Cardamine hirsuta
CARHR195910 Cardamine hirsuta
CARHR215820 Cardamine hirsuta
Carub.0001s0116 Capsella rubella
Carub.0001s1795 Capsella rubella
Carub.0004s2954 Capsella rubella
Carub.0006s1549 Capsella rubella
Carub.0007s3239 Capsella rubella
Ca_05763_v3 Cicer arietinum L.
Ca_09556_v3 Cicer arietinum L.
Ca_18565_v3 Cicer arietinum L.
CBR_g855 Chara braunii
Cc02_g39990 Coffea canephora
Cc04_g08830 Coffea canephora
Cc07_g12820 Coffea canephora
CDE02G2757 Ceratophyllum demersum
CDE04G0747 Ceratophyllum demersum
CDE04G1467 Ceratophyllum demersum
CDE05G2118 Ceratophyllum demersum
CDE05G3440 Ceratophyllum demersum
CDE12G0106 Ceratophyllum demersum
CDE12G0581 Ceratophyllum demersum
CDE12G0822 Ceratophyllum demersum
Cfa003724 Carpinus fangiana
Cfa007756 Carpinus fangiana
Ciclev10011554m.g Citrus clementina
Ciclev10018964m.g Citrus clementina
Ciclev10020130m.g Citrus clementina
CiPaw.01G085700 Carya illinoinensis
CiPaw.02G045300 Carya illinoinensis
CiPaw.03G076500 Carya illinoinensis
CiPaw.04G049100 Carya illinoinensis
CiPaw.15G151000 Carya illinoinensis
CiPaw.16G100600 Carya illinoinensis
ClCG01G008570 Citrullus lanatus
ClCG04G012470 Citrullus lanatus
ClCG06G002310 Citrullus lanatus
ClCG06G002330 Citrullus lanatus
COL.COLO4_22336 Corchorus olitorius
COL.COLO4_23060 Corchorus olitorius
Cpa.g.sc1055.1 Carica papaya
Cpa.g.sc178.22 Carica papaya
Cpa.g.sc57.78 Carica papaya
Cpa.g.sc7.134 Carica papaya
Cre06.g275350 Chlamydomonas reinhardtii
Cre12.g514400 Chlamydomonas reinhardtii
CsaV3_1G005230 Cucumis sativus L.
CsaV3_5G020580 Cucumis sativus L.
CsaV3_6G008360 Cucumis sativus L.
CSS0039199 Camellia sinensis var. sinensis
CSS0046011 Camellia sinensis var. sinensis
DCAR_003410 Daucus carota
DCAR_006991 Daucus carota
DCAR_010064 Daucus carota
DCAR_014144 Daucus carota
DCAR_023259 Daucus carota
Dinv28239 Davidia involucrata
Dinv32651 Davidia involucrata
Dinv32652 Davidia involucrata
Dinv34262 Davidia involucrata
Duzib068G1325 Durio zibethinus
Duzib084G0912 Durio zibethinus
Duzib133G0065 Durio zibethinus
Duzib138G1188 Durio zibethinus
ECA238G0786 Erigeron canadensis
ECA240G1436 Erigeron canadensis
ECA247G0035 Erigeron canadensis
EL10Ac1g00171 Beta vulgaris
EL10Ac4g08920 Beta vulgaris
Eucgr.D02651 Eucalyptus grandis
Eucgr.F02906 Eucalyptus grandis
Eucgr.K02302 Eucalyptus grandis
FAN01G0834 Fragaria x ananassa
FAN01G1785 Fragaria x ananassa
FAN02G3085 Fragaria x ananassa
FAN03G0514 Fragaria x ananassa
FAN03G1652 Fragaria x ananassa
FAN04G1754 Fragaria x ananassa
FAN06G1969 Fragaria x ananassa
FAN06G3608 Fragaria x ananassa
FAN08G3081 Fragaria x ananassa
FAN09G0307 Fragaria x ananassa
FAN10G0258 Fragaria x ananassa
FAN10G4260 Fragaria x ananassa
FAN13G2095 Fragaria x ananassa
FAN15G2528 Fragaria x ananassa
FAN17G2333 Fragaria x ananassa
FAN18G1522 Fragaria x ananassa
FAN24G2965 Fragaria x ananassa
FvH4_5g18100 Fragaria vesca
FvH4_7g17850 Fragaria vesca
Glyma.02G241000 Glycine max
Glyma.03G261800 Glycine max
Glyma.07G048500 Glycine max
Glyma.09G167900 Glycine max
Glyma.11G211643 Glycine max
Glyma.14G210600 Glycine max
Glyma.16G017400 Glycine max
Glyma.16G217700 Glycine max
Glyma.18G044200 Glycine max
Glyma.19G260900 Glycine max
Gohir.A07G061400 Gossypium hirsutum
Gohir.A11G101800 Gossypium hirsutum
Gohir.A12G117400 Gossypium hirsutum
Gohir.A12G117500 Gossypium hirsutum
Gohir.A12G272500 Gossypium hirsutum
Gohir.D07G066100 Gossypium hirsutum
Gohir.D11G106400 Gossypium hirsutum
Gohir.D12G121000 Gossypium hirsutum
Gohir.D12G121100 Gossypium hirsutum
Gohir.D12G273200 Gossypium hirsutum
Gorai.001G069700 Gossypium raimondii
Gorai.007G113900 Gossypium raimondii
Gorai.008G131800 Gossypium raimondii
Gorai.008G132000 Gossypium raimondii
Gorai.008G293600 Gossypium raimondii
GSVIVG01027456001 Vitis vinifera
GSVIVG01035231001 Vitis vinifera
HanXRQChr03g0064181 Helianthus annuus
HanXRQChr09g0264401 Helianthus annuus
HanXRQChr09g0264411 Helianthus annuus
HanXRQChr12g0365781 Helianthus annuus
HanXRQChr15g0482371 Helianthus annuus
HanXRQChr15g0489571 Helianthus annuus
HanXRQChr15g0489581 Helianthus annuus
HanXRQChr16g0532271 Helianthus annuus
Haze_14316 Corylus avellana
Haze_15754 Corylus avellana
Haze_18989 Corylus avellana
Hma1.2p1_0074F.1_g038840 Hydrangea macrophylla
Hma1.2p1_0493F.1_g165020 Hydrangea macrophylla
Hma1.2p1_2492F.1_g323260 Hydrangea macrophylla
HPP92_002735 Vanilla planifolia
HPP92_005445 Vanilla planifolia
HPP92_012065 Vanilla planifolia
HPP92_012071 Vanilla planifolia
HPP92_012744 Vanilla planifolia
HPP92_020743 Vanilla planifolia
HPP92_020838 Vanilla planifolia
HPP92_022652 Vanilla planifolia
HPP92_022665 Vanilla planifolia
Hund16759 Selenicereus undatus
Hund22210 Selenicereus undatus
Hund27142 Selenicereus undatus
Hund27143 Selenicereus undatus
Lalb_Chr04g0251501 Lupinus albus
Lalb_Chr04g0259271 Lupinus albus
Lalb_Chr10g0100921 Lupinus albus
Lalb_Chr14g0370391 Lupinus albus
Lalb_Chr15g0076591 Lupinus albus
Lalb_Chr15g0085241 Lupinus albus
Lalb_Chr18g0044761 Lupinus albus
Lalb_Chr22g0353751 Lupinus albus
Lalb_Chr24g0398451 Lupinus albus
Lj2A512T35 Lonicera japonica
Lj2g0006212 Lotus japonicus
Lj3g0020484 Lotus japonicus
Lj4A253G30 Lonicera japonica
Lj6g0016864 Lotus japonicus
Lj9C609G5 Lonicera japonica
LjContig00141g0000194 Lotus japonicus
Lsat_1_v5_gn_3_140720 Lactuca sativa
Lsat_1_v5_gn_3_67100 Lactuca sativa
Manes.01G123100 Manihot esculenta
Manes.01G239000 Manihot esculenta
Manes.02G080700 Manihot esculenta
Manes.05G015600 Manihot esculenta
MBI04_g18999_MAGBIO Magnolia biondii
MBI08_g09794_MAGBIO Magnolia biondii
MBI12_g27877_MAGBIO Magnolia biondii
MCO03G207 Micromonas commoda
MCO14G255 Micromonas commoda
MD01G1090900 Malus domestica
MD06G1236500 Malus domestica
MD09G1279300 Malus domestica
MD14G1243400 Malus domestica
MD17G1271400 Malus domestica
Medtr3g064500 Medicago truncatula
Medtr5g076960 Medicago truncatula
Medtr6g477860 Medicago truncatula
Medtr7g118330 Medicago truncatula
Medtr8g014240 Medicago truncatula
MELO3C001962.2 Cucumis melo
MELO3C022302.2 Cucumis melo
MELO3C025091.2 Cucumis melo
Migut.H02250 Erythranthe guttata
Migut.K00742 Erythranthe guttata
Migut.N01518 Erythranthe guttata
Migut.O00255 Erythranthe guttata
MSTRG.15639 Avicennia marina
MSTRG.4794 Avicennia marina
Nitab4.5_0000005g0090 Nicotiana tabacum
Nitab4.5_0000011g0070 Nicotiana tabacum
Nitab4.5_0000011g0080 Nicotiana tabacum
Nitab4.5_0001180g0220 Nicotiana tabacum
Nitab4.5_0004614g0010 Nicotiana tabacum
Nitab4.5_0004694g0040 Nicotiana tabacum
Nitab4.5_0004821g0020 Nicotiana tabacum
Nitab4.5_0005359g0030 Nicotiana tabacum
Nitab4.5_0007792g0010 Nicotiana tabacum
Nitab4.5_0009714g0010 Nicotiana tabacum
Nn1g00457 Nelumbo nucifera
Nn4g24695 Nelumbo nucifera
Oeu007723.1 Olea europaea
Oeu009446.1 Olea europaea
Oeu029720.2 Olea europaea
Oeu032681.1 Olea europaea
Oeu034954.1 Olea europaea
Oeu053268.1 Olea europaea
Oeu056931.1 Olea europaea
Oeu061198.1 Olea europaea
Oeu064410.3 Olea europaea
Os01g0156000 Oryza sativa ssp. japonica
Os02g0685200 Oryza sativa ssp. japonica
Os04g0583900 Oryza sativa ssp. japonica
Os05g0162800 Oryza sativa ssp. japonica
Os06g0728700 Oryza sativa ssp. japonica
Os08g0157600 Oryza sativa ssp. japonica
Peaxi162Scf00092g01519 Petunia axillaris
Peaxi162Scf00092g01520 Petunia axillaris
Peaxi162Scf00171g00419 Petunia axillaris
Peaxi162Scf00294g00813 Petunia axillaris
Peaxi162Scf00358g00058 Petunia axillaris
Peaxi162Scf00990g00129 Petunia axillaris
Peaxi162Scf00990g00130 Petunia axillaris
Peaxi162Scf01096g00316 Petunia axillaris
PGR031G0915 Punica granatum
PGR042G3835 Punica granatum
PGR044G0695 Punica granatum
PGR083G1357 Punica granatum
PGSC0003DMG400011294 Solanum tuberosum
PGSC0003DMG400021459 Solanum tuberosum
PGSC0003DMG400025632 Solanum tuberosum
Phvul.004G143400 Phaseolus vulgaris
Phvul.006G086700 Phaseolus vulgaris
Phvul.008G240700 Phaseolus vulgaris
Phvul.009G259400 Phaseolus vulgaris
Phvul.009G259650 Phaseolus vulgaris
Phvul.010G120401 Phaseolus vulgaris
Potri.002G180800 Populus trichocarpa
Potri.004G074300 Populus trichocarpa
Potri.012G038300 Populus trichocarpa
Potri.014G106800 Populus trichocarpa
Potri.015G030400 Populus trichocarpa
Potri.017G144800 Populus trichocarpa
PRCOL_00003555 Prasinoderma coloniale
PRCOL_00004621 Prasinoderma coloniale
PRCOL_00005902 Prasinoderma coloniale
PRCOL_00006019 Prasinoderma coloniale
Prupe.2G200300 Prunus persica
Prupe.2G200400 Prunus persica
Prupe.3G014900 Prunus persica
Prupe.5G241000 Prunus persica
Psat0s580g0080 Pisum sativum
Psat1g031440 Pisum sativum
Psat2g042600 Pisum sativum
Psat3g000720 Pisum sativum
Psat5g142200 Pisum sativum
PSO063G2933 Papaver somniferum
PSO063G7446 Papaver somniferum
PSO782G0772 Papaver somniferum
PSO782G1607 Papaver somniferum
QL02p064353 Quercus lobata
QL08p047700 Quercus lobata
QL10p032555 Quercus lobata
RcHm_v2.0_Chr1g0361301 Rosa chinensis
RcHm_v2.0_Chr3g0488811 Rosa chinensis
RcHm_v2.0_Chr3g0496521 Rosa chinensis
RcHm_v2.0_Chr5g0036391 Rosa chinensis
RcHm_v2.0_Chr7g0177511 Rosa chinensis
Rhsim08G0021000 Rhododendron simsii
Rhsim10G0185100 Rhododendron simsii
Sabra02G0133600 Salix brachista
Sabra04G0049000 Salix brachista
Sabra12G0026600 Salix brachista
Sabra14G0079000 Salix brachista
Sabra15G0025400 Salix brachista
Sabra17G0121300 Salix brachista
SalBow1G3980 Salvia bowleyana
SalBow3G0489 Salvia bowleyana
SalBow3G0890 Salvia bowleyana
SalBow5G0551 Salvia bowleyana
SalBow5G1283 Salvia bowleyana
SalBow5G1601 Salvia bowleyana
SalBow5G2786 Salvia bowleyana
SalBow5G5002 Salvia bowleyana
Sc06g0003060 Simmondsia chinensis
Sc09g0004520 Simmondsia chinensis
Sc26g0000440 Simmondsia chinensis
Sed0003511 Sechium edule
Sed0013817 Sechium edule
Sed0026128 Sechium edule
Sed0027265 Sechium edule
Sed0027597 Sechium edule
Sed0027965 Sechium edule
SEGI_18839 Sequoiadendron giganteum
SEGI_19717 Sequoiadendron giganteum
SGA_v2.0_scaffold115G32051 Striga asiatica
SGA_v2.0_scaffold232G43523 Striga asiatica
SGA_v2.0_scaffold45G17111 Striga asiatica
SGA_v2.0_scaffold90G27769 Striga asiatica
SMO356G0005 Selaginella moellendorffii
SMO356G0029 Selaginella moellendorffii
SMO361G0774 Selaginella moellendorffii
SMO367G0838 Selaginella moellendorffii
Solyc02g036370.3 Solanum lycopersicum
Solyc03g098320.4 Solanum lycopersicum
Solyc10g005080.3 Solanum lycopersicum
Sopen02g011740 Solanum pennellii
Sopen03g029070 Solanum pennellii
Sopen10g001100 Solanum pennellii
Sp1g01250 Schrenkiella parvula
Sp1g16290 Schrenkiella parvula
Sp4g28860 Schrenkiella parvula
Sp6g26930 Schrenkiella parvula
Sp7g05190 Schrenkiella parvula
TAR371G0045 Trochodendron aralioides
TAR374G0209 Trochodendron aralioides
TAR375G0744 Trochodendron aralioides
TAR629G0925 Trochodendron aralioides
TAR629G3201 Trochodendron aralioides
THA.LOC104802910 Tarenaya hassleriana
THA.LOC104803067 Tarenaya hassleriana
THA.LOC104805656 Tarenaya hassleriana
THA.LOC104812176 Tarenaya hassleriana
THA.LOC104815900 Tarenaya hassleriana
THA.LOC104825910 Tarenaya hassleriana
THA.LOC104827228 Tarenaya hassleriana
THA.LOC104827645 Tarenaya hassleriana
Thecc.01G332000 Theobroma cacao
Thecc.03G069300 Theobroma cacao
Thhalv10007028m.g Eutrema salsugineum
Thhalv10008035m.g Eutrema salsugineum
Thhalv10013821m.g Eutrema salsugineum
Thhalv10028153m.g Eutrema salsugineum
TPR.G24076 Trifolium pratense
TPR.G26665 Trifolium pratense
TPR.G39688 Trifolium pratense
TPR.G4678 Trifolium pratense
TWI14G1269 Tripterygium wilfordii
TWI23G1207 Tripterygium wilfordii
TWI74G0904 Tripterygium wilfordii
TWI81G1017 Tripterygium wilfordii
unitig_0.g2640 Utricularia gibba
unitig_22.g5436 Utricularia gibba
unitig_22.g6823 Utricularia gibba
unitig_45.g31541 Utricularia gibba
unitig_578.g16510 Utricularia gibba
unitig_748.g7020 Utricularia gibba
unitig_8.g3406 Utricularia gibba
unitig_8.g4997 Utricularia gibba
vmacro12634 Vaccinium macrocarpon
vmacro12635 Vaccinium macrocarpon
vmacro18512 Vaccinium macrocarpon
vmacro20473 Vaccinium macrocarpon
VMungo0331G1277 Vigna mungo
VMungo0464G0779 Vigna mungo
VMungo0464G1223 Vigna mungo
VMungo0540G1530 Vigna mungo
VMungo0647G1447 Vigna mungo
VMungo1127G2175 Vigna mungo
VMungo1309G2431 Vigna mungo
VMungo1383G3693 Vigna mungo
Zm00001eb065430 Zea mays
Zm00001eb065440 Zea mays
Zm00001eb072870 Zea mays
Zm00001eb123770 Zea mays
Zm00001eb172450 Zea mays
Zm00001eb187450 Zea mays
Zm00001eb228670 Zea mays
Zm00001eb250940 Zea mays
Zm00001eb415760 Zea mays
Zm00001eb415770 Zea mays
Zm00001eb428070 Zea mays

User provided reference genes

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