Gene: Carub.0001s0116
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0001s0116
- Transcript Identifier Carub.0001s0116.1
- Gene Type Coding gene
- Location scaffold_1 : 407292-410426 : positive
Gene Family Information
- ID HOM05D001251
- #Genes/#Species 498/97
- Phylogenetic origin
- ID ORTHO05D004135
- #Genes/#Species 190/88
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0001s0116.v1.1
- pacid 39228870
- synonym Carubv10008551m.g
Descriptions
- Description K12133 - MYB-related transcription factor LHY (LHY)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT1G01060 |
| GO:0048574 | ISO | PLAZA Integrative Orthology | long-day photoperiodism, flowering | AT1G01060 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT1G01060 |
| GO:0043433 | ISO | PLAZA Integrative Orthology | negative regulation of DNA-binding transcription factor activity | AT1G01060 |
| GO:0042752 | ISO | PLAZA Integrative Orthology | regulation of circadian rhythm | AT1G01060 |
| GO:0007623 | ISO | PLAZA Integrative Orthology | circadian rhythm | AT1G01060 |
| GO:0042754 | ISO | PLAZA Integrative Orthology | negative regulation of circadian rhythm | AT1G01060 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003700 | ISO | PLAZA Integrative Orthology | DNA-binding transcription factor activity | AT1G01060 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT1G01060 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |