Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.0e-160 570.1 302 100.0
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.9e-159 565.8 302 99.3
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 5.5e-114 414.8 314 74.8
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 4.2e-98 362.1 320 65.9
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.8e-96 356.7 320 62.8
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.2e-95 354.0 318 64.2
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 1.6e-89 333.6 311 58.2
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 5.2e-88 328.6 319 58.6
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 2.0e-87 326.6 306 60.5
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 2.6e-87 326.2 298 60.7
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.7e-86 323.6 313 60.4
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 2.2e-86 323.2 244 66.4
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 3.7e-86 322.4 313 60.1
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 3.1e-85 319.3 278 58.6
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 4.1e-85 318.9 278 60.1
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 4.1e-85 318.9 277 59.6
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 4.1e-85 318.9 274 60.9
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 2.0e-84 316.6 310 55.8
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 4.5e-84 315.5 274 62.0
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 7.7e-84 314.7 312 56.7
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 7.7e-84 314.7 276 59.1
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.0e-83 314.3 255 65.9
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 1.3e-83 313.9 320 55.6
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 1.7e-83 313.5 312 59.0
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 3.8e-83 312.4 284 60.2
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 6.6e-83 311.6 314 54.8
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 1.1e-82 310.8 235 65.1
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.9e-82 310.1 319 54.2
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 2.5e-82 309.7 314 55.7
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 3.3e-82 309.3 313 55.3
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 4.2e-82 308.9 288 57.6
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 7.2e-82 308.1 281 60.1
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 7.2e-82 308.1 235 66.0
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 7.2e-82 308.1 238 63.0
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 9.5e-82 307.8 311 56.9
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 2.1e-81 306.6 315 53.7
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 2.8e-81 306.2 300 56.3
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.0e-80 304.3 313 55.3
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.0e-80 304.3 309 56.3
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 1.4e-80 303.9 231 65.8
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.4e-80 303.9 307 55.0
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.8e-80 303.5 266 60.5
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 2.3e-80 303.1 273 57.9
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.3e-80 303.1 318 53.8
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 3.0e-80 302.8 279 57.3
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 3.0e-80 302.8 229 66.4
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 6.8e-80 301.6 307 55.7
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 6.8e-80 301.6 295 58.3
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.5e-79 300.4 308 52.6
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 1.5e-79 300.4 307 55.4
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.0e-79 300.1 300 54.7
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.6e-79 299.7 265 59.2
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 7.5e-79 298.1 281 58.0
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 7.5e-79 298.1 311 55.0
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 7.5e-79 298.1 229 64.2
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 7.5e-79 298.1 312 55.1
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.5e-79 298.1 282 55.3
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 7.5e-79 298.1 314 52.5
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 9.8e-79 297.7 311 54.0
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 9.8e-79 297.7 310 54.5
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.3e-78 297.4 289 56.1
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 1.7e-78 297.0 302 54.0
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 2.2e-78 296.6 303 53.8
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 2.2e-78 296.6 298 59.1
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 2.9e-78 296.2 309 53.7
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 3.7e-78 295.8 304 55.3
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 4.9e-78 295.4 280 58.6
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 6.4e-78 295.0 232 61.2
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 6.4e-78 295.0 320 51.9
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.4e-77 293.9 307 52.8
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.8e-77 293.5 273 59.0
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 4.1e-77 292.4 312 51.6
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 4.1e-77 292.4 312 52.9
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.1e-77 292.4 272 56.2
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 5.4e-77 292.0 251 58.6
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 5.4e-77 292.0 310 51.6
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 7.0e-77 291.6 312 51.6
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 9.2e-77 291.2 311 53.1
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 9.2e-77 291.2 300 52.7
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.6e-76 290.4 314 51.6
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.6e-76 290.4 231 63.2
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 2.0e-76 290.0 236 60.2
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 2.7e-76 289.7 266 58.6
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.5e-76 289.3 272 55.5
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 4.6e-76 288.9 268 57.1
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 1.3e-75 287.3 310 56.1
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.3e-75 287.3 284 56.0
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 2.9e-75 286.2 303 52.5
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 5.0e-75 285.4 287 56.4
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 5.0e-75 285.4 268 55.2
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.1e-74 284.3 322 51.2
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 4.7e-73 278.9 308 52.9
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 5.2e-72 275.4 279 53.0
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.5e-71 273.9 246 63.0
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 9.8e-71 271.2 268 53.7
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 4.9e-70 268.9 217 63.1
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.1e-69 267.7 279 52.3
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.6e-68 263.8 225 60.9
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.0e-68 263.5 211 63.0
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 6.0e-68 261.9 269 53.9
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 3.9e-67 259.2 238 55.0
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 5.8e-63 245.4 233 55.4
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 2.2e-62 243.4 225 56.0
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.2e-60 237.7 228 53.5
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.5e-58 229.9 225 58.7
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 6.8e-56 221.9 225 53.3
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 1.2e-55 221.1 268 47.0
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.2e-55 221.1 214 52.3
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.0e-55 220.3 219 52.1
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.0e-55 220.3 222 50.9
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 9.9e-55 218.0 213 57.3
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 1.3e-54 217.6 230 49.1
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.2e-54 216.9 189 60.8
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.2e-54 216.9 189 60.8
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 4.9e-54 215.7 202 55.9
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-53 214.2 196 56.1
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 4.4e-47 192.6 171 56.1
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 4.2e-45 186.0 238 49.6
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.2e-45 186.0 158 57.0
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 9.3e-45 184.9 235 46.8
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.4e-39 166.0 179 50.8
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 6.6e-35 152.1 245 37.1
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.8e-32 144.1 208 41.3
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 2.5e-26 123.6 202 31.2
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 5.6e-26 122.5 74 71.6
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.4e-24 117.9 130 51.5
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.1e-21 108.2 198 37.9
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 2.5e-21 107.1 65 76.9
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 8.7e-19 98.6 62 67.7
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-11 75.1 47 68.1
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.9e-11 73.2 94 44.7
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 3.7e-09 66.6 51 60.8
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 3.7e-09 66.6 81 46.9
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 9.0e-08 62.0 77 44.2
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 2.0e-07 60.8 46 60.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 2.6e-07 60.5 36 72.2
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 1.0e-06 58.5 70 47.1
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.3e-06 58.2 48 56.2
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 8.5e-06 55.5 43 60.5


User provided reference genes

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