Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 6.3e-230 800.4 407 100.0
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 2.1e-132 476.5 381 71.1
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 5.9e-103 378.6 358 62.3
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 3.3e-77 293.1 301 57.5
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 9.8e-74 281.6 353 50.4
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.4e-72 277.7 398 47.0
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.5e-69 266.9 354 48.6
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 6.1e-68 262.3 354 49.2
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 3.1e-67 260.0 231 62.3
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 5.2e-67 259.2 357 49.3
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 1.5e-66 257.7 358 48.6
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.4e-66 256.5 334 50.9
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 1.7e-65 254.2 332 50.0
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 3.7e-65 253.1 404 46.0
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 1.1e-64 251.5 353 48.7
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 1.9e-64 250.8 353 46.2
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.4e-64 250.4 353 46.5
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 3.2e-64 250.0 354 46.3
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 4.1e-64 249.6 349 47.9
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 5.4e-64 249.2 353 46.5
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.2e-63 248.1 300 52.0
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 4.6e-63 246.1 360 47.2
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 4.6e-63 246.1 360 48.3
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 6.0e-63 245.7 356 45.8
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.3e-62 244.6 300 51.7
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 2.3e-62 243.8 358 46.4
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 3.9e-62 243.0 395 43.5
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 3.9e-62 243.0 300 50.3
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 6.6e-62 242.3 300 51.3
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 8.6e-62 241.9 300 51.0
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 8.6e-62 241.9 305 50.8
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 1.9e-61 240.7 351 47.0
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 2.5e-61 240.4 306 50.7
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 8.0e-60 235.3 355 46.2
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.1e-59 235.0 310 49.0
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.8e-59 234.2 302 49.7
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 2.3e-59 233.8 354 45.2
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 3.1e-59 233.4 303 51.5
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 5.2e-59 232.6 354 46.3
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 3.4e-58 229.9 351 45.0
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 5.8e-58 229.2 358 45.5
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 9.8e-58 228.4 373 43.2
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 2.9e-57 226.9 367 45.8
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 3.7e-57 226.5 278 49.3
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 3.7e-57 226.5 314 46.8
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 6.4e-57 225.7 305 48.5
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 6.4e-57 225.7 356 45.2
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 6.4e-57 225.7 379 43.0
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.1e-56 224.9 354 44.6
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 1.1e-56 224.9 305 49.2
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.9e-56 224.2 324 46.3
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.6e-55 221.1 314 45.9
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 4.6e-55 219.5 361 43.2
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 4.6e-55 219.5 325 44.9
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.3e-54 217.2 357 44.5
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 6.6e-54 215.7 353 44.8
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 2.5e-53 213.8 311 46.6
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 2.1e-52 210.7 353 43.6
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.4e-51 208.0 296 45.9
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.3e-51 207.2 366 42.1
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 6.8e-51 205.7 356 40.7
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.5e-50 204.5 346 43.4
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.6e-50 203.8 135 78.5
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 2.6e-50 203.8 320 46.2
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 6.4e-49 199.1 306 47.1
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 1.9e-48 197.6 353 41.4
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.4e-48 197.2 355 41.7
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.2e-48 196.8 302 45.0
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.1e-48 196.4 302 45.0
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.2e-47 194.9 382 37.7
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 1.6e-47 194.5 355 41.4
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.6e-47 193.0 354 41.5
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.0e-46 191.8 368 39.4
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.6e-46 188.7 359 40.7
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 2.5e-45 187.2 337 41.8
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 2.4e-43 180.6 387 37.5
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 2.4e-43 180.6 335 39.4
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 5.2e-43 179.5 343 39.4
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 7.6e-42 175.6 206 49.0
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.3e-41 174.9 360 38.1
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 6.4e-41 172.6 360 36.9
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.1e-40 171.8 294 42.9
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 1.1e-40 171.8 300 40.3
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 1.1e-40 171.8 300 40.3
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.1e-40 171.8 248 48.0
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.9e-40 171.0 334 39.2
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 1.9e-40 171.0 356 37.1
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 7.1e-40 169.1 134 63.4
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 1.6e-39 167.9 334 37.4
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.6e-39 167.9 360 36.4
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 3.5e-39 166.8 307 41.7
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 7.8e-39 165.6 297 43.1
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 7.8e-39 165.6 297 43.1
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 2.3e-38 164.1 295 41.4
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 3.6e-36 156.8 347 37.8
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 6.2e-36 156.0 297 39.1
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 1.8e-35 154.5 344 36.3
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 3.4e-34 150.2 333 35.4
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.7e-33 147.9 319 37.9
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 4.6e-31 139.8 333 36.6
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.3e-30 137.5 307 38.4
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.9e-30 136.7 93 73.1
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.9e-30 136.7 93 73.1
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 5.1e-30 136.3 237 41.4
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 5.1e-30 136.3 287 38.7
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 2.5e-29 134.0 311 36.7
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 4.3e-29 133.3 311 36.0
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.3e-28 131.7 217 43.8
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.8e-27 127.9 299 34.4
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 9.0e-27 125.6 293 36.5
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 7.6e-26 122.5 260 41.2
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 9.6e-21 105.5 65 69.2
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 9.6e-21 105.5 70 74.3
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 1.6e-20 104.8 63 71.4
CSS0035544 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.1e-20 104.4 84 63.1
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.8e-19 101.3 141 43.3
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.4e-18 97.1 176 42.0
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 7.6e-18 95.9 116 44.8
CSS0027816 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.5e-16 89.7 80 58.8
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 3.5e-15 87.0 178 36.5
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.8e-14 84.7 133 44.4
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.3e-12 78.6 151 40.4
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 8.2e-12 75.9 138 37.7
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 1.8e-11 74.7 137 36.5
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.9e-11 72.8 95 53.7
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.9e-11 72.8 95 53.7
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.4e-10 70.5 158 41.1
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 1.3e-09 68.6 95 50.5
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 8.4e-09 65.9 128 39.8
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 3.0e-06 57.4 106 45.3
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 3.9e-06 57.0 83 45.8


User provided reference genes

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