Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 3.5e-175 619.0 558 100.0
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 7.0e-123 445.3 336 83.9
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 7.0e-123 445.3 336 83.9
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 3.5e-122 443.0 336 83.9
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 1.9e-115 420.6 512 85.7
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 6.0e-114 415.6 336 80.4
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 2.1e-111 407.1 337 78.9
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 2.0e-109 400.6 336 77.4
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 5.4e-107 392.5 333 76.6
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 7.1e-107 392.1 336 75.6
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 1.6e-106 391.0 337 76.6
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 1.6e-106 391.0 337 76.0
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 7.8e-106 388.7 337 75.7
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 1.7e-105 387.5 320 79.1
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 2.3e-105 387.1 330 76.4
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 5.1e-105 386.0 336 74.7
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 5.1e-105 386.0 329 77.2
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 5.1e-105 386.0 336 76.5
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 6.6e-105 385.6 314 80.6
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 8.6e-105 385.2 337 75.4
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 1.1e-104 384.8 316 80.7
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 1.1e-104 384.8 330 77.0
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.9e-104 384.0 307 81.1
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 3.3e-104 383.3 304 81.6
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 9.5e-104 381.7 336 75.6
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.2e-103 381.3 307 80.8
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 3.6e-103 379.8 310 79.7
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 8.1e-103 378.6 336 75.9
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 8.1e-103 378.6 337 73.0
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 4.4e-101 372.9 336 73.8
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 4.4e-101 372.9 313 78.9
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 4.9e-100 369.4 336 73.5
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 1.1e-99 368.2 319 76.5
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 2.4e-99 367.1 320 75.3
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 9.2e-99 365.2 312 77.6
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 6.0e-98 362.5 336 72.6
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 1.3e-97 361.3 336 71.7
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 1.7e-97 360.9 305 77.4
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 1.7e-97 360.9 337 73.0
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 5.1e-97 359.4 337 72.7
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 6.6e-97 359.0 337 57.6
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 1.1e-96 358.2 320 73.4
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 2.5e-96 357.1 306 77.1
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 2.1e-95 354.0 337 72.1
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 2.1e-95 354.0 307 69.4
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 2.8e-95 353.6 337 72.1
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 4.7e-95 352.8 301 78.1
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 4.7e-95 352.8 336 71.7
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 6.2e-95 352.4 302 79.1
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 1.4e-94 351.3 296 72.6
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 5.2e-94 349.4 336 70.8
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 6.8e-94 349.0 309 76.1
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 8.9e-94 348.6 303 75.9
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 8.9e-94 348.6 303 75.9
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 1.2e-93 348.2 307 76.9
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 1.2e-93 348.2 295 78.0
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.5e-93 347.8 304 75.3
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.0e-93 347.4 303 77.6
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 2.6e-93 347.1 336 70.8
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 2.6e-93 347.1 340 69.7
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 5.8e-93 345.9 303 61.1
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 5.8e-93 345.9 307 76.5
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 9.9e-93 345.1 303 76.2
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 9.9e-93 345.1 295 79.0
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 9.9e-93 345.1 320 73.4
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.3e-92 344.7 351 63.0
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.7e-92 344.4 336 70.5
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 2.2e-92 344.0 337 70.6
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 2.2e-92 344.0 345 70.4
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.9e-92 343.6 302 75.5
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 3.8e-92 343.2 333 70.9
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 4.9e-92 342.8 337 70.0
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.9e-92 342.8 336 70.5
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 6.4e-92 342.4 336 70.5
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 2.4e-91 340.5 336 70.2
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 3.2e-91 340.1 330 71.2
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 5.4e-91 339.3 304 74.7
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.6e-90 337.8 290 80.0
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 2.7e-90 337.0 348 68.4
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 3.5e-90 336.7 336 69.0
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 7.8e-90 335.5 329 69.9
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 1.3e-89 334.7 332 69.9
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 1.1e-88 331.6 317 70.0
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 1.9e-88 330.9 307 72.0
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 7.3e-88 328.9 303 72.6
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 2.2e-84 317.4 337 68.2
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 6.4e-84 315.8 303 69.6
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 1.9e-83 314.3 337 67.7
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 1.2e-82 311.6 337 67.7
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 1.1e-80 305.1 317 69.1
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 9.6e-80 302.0 337 66.5
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 9.6e-80 302.0 337 67.4
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 2.4e-75 287.3 292 72.3
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 7.4e-72 275.8 291 70.4
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 3.1e-70 270.4 291 66.0
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 1.2e-69 268.5 183 74.9
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 2.6e-69 267.3 316 48.7
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.4e-67 261.5 300 66.7
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.1e-58 231.1 136 82.4
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 8.7e-57 225.7 211 81.5
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 8.2e-55 219.2 181 61.9
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 8.8e-49 199.1 146 65.1
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 4.1e-46 190.3 196 78.1
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.7e-39 167.2 125 67.2
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 5.3e-38 163.3 102 77.5
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 1.3e-36 158.7 101 77.2
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 6.3e-31 139.8 261 50.6
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 4.5e-29 133.7 262 48.1
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 5.5e-27 126.7 304 32.6
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.5e-24 118.6 266 41.7
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 4.4e-24 117.1 82 70.7
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 2.7e-21 107.8 78 69.2
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.5e-19 102.1 73 69.9
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.8e-15 87.8 92 54.3
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 2.8e-10 71.2 48 66.7
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 6.8e-09 66.6 77 51.9
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 3.2e-06 57.8 113 25.7
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 4.1e-06 57.4 31 87.1
SEGI_19840 Sequoiadendron giganteum HOM05D006642 ORTHO05D027104 7.0e-06 56.6 42 61.9


User provided reference genes

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