Gene: AT3G59040

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G59040
  • Transcript Identifier AT3G59040.1
  • Gene Type Coding gene
  • Location Chr3 : 21821495-21824233 : negative

Gene Family Information

  • ID HOM05D006642
  • #Genes/#Species 121/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G59040.1
  • uniprot Q9LYT2

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 49720 Blast hits to 14374 proteins in 322 species: Archae - 6; Bacteria - 73; Metazoa - 697; Fungi - 944; Plants - 46205; Viruses - 0; Other Eukaryotes - 1795 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding1
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0009507
IDA
ISM
Gene Ontologychloroplast2
GO:0005634
IDA
Gene Ontologynucleus2
GO:0005737
IDA
Gene Ontologycytoplasm2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.5.6 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial RNA processing factor (PPR287)