Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19792 Vaccinium macrocarpon HOM05D006623 ORTHO05D008102 5.2e-215 750.7 371 100.0
Rhsim05G0132300 Rhododendron simsii HOM05D006623 ORTHO05D008102 2.5e-108 396.4 370 59.2
CSS0040730 Camellia sinensis var. sinensis HOM05D006623 ORTHO05D008102 9.5e-100 367.9 363 56.2
CSS0001336 Camellia sinensis var. sinensis HOM05D006623 ORTHO05D008102 3.6e-99 365.9 363 56.2
vmacro19739 Vaccinium macrocarpon HOM05D006623 ORTHO05D008102 3.4e-89 332.8 327 61.2
Prupe.6G313700 Prunus persica HOM05D006623 ORTHO05D008102 3.3e-84 316.2 368 51.1
MD12G1206400 Malus domestica HOM05D006623 ORTHO05D008102 4.7e-83 312.4 369 49.1
Lsat_1_v5_gn_7_74540 Lactuca sativa HOM05D006623 ORTHO05D008102 2.3e-82 310.1 361 49.3
Oeu041540.1 Olea europaea HOM05D006623 ORTHO05D008102 1.2e-81 307.8 366 47.5
CiPaw.07G029000 Carya illinoinensis HOM05D006623 ORTHO05D008102 2.6e-81 306.6 360 48.6
Thecc.05G322000 Theobroma cacao HOM05D006623 ORTHO05D008102 5.8e-81 305.4 362 48.3
Gorai.004G236900 Gossypium raimondii HOM05D006623 ORTHO05D008102 1.3e-80 304.3 331 50.5
Gohir.A08G206200 Gossypium hirsutum HOM05D006623 ORTHO05D008102 4.9e-80 302.4 331 50.5
CAN.G1715.8 Capsicum annuum HOM05D006623 ORTHO05D008102 1.4e-79 300.8 352 47.4
Cc02_g34940 Coffea canephora HOM05D006623 ORTHO05D008102 3.2e-79 299.7 372 46.2
TAR362G0438 Trochodendron aralioides HOM05D006623 ORTHO05D008102 4.1e-79 299.3 341 50.4
Nn3g21680 Nelumbo nucifera HOM05D006623 ORTHO05D008102 5.4e-79 298.9 339 47.8
Ciclev10001637m.g Citrus clementina HOM05D006623 ORTHO05D008102 7.1e-79 298.5 325 50.5
SGA_v2.0_scaffold53G19299 Striga asiatica HOM05D006623 ORTHO05D008102 7.1e-79 298.5 366 46.2
Sopen01g043920 Solanum pennellii HOM05D006623 ORTHO05D008102 1.6e-78 297.4 373 46.4
Solyc01g100400.3 Solanum lycopersicum HOM05D006623 ORTHO05D008102 2.1e-78 297.0 373 46.4
FAN02G4416 Fragaria x ananassa HOM05D006623 ORTHO05D008102 2.7e-78 296.6 326 50.3
Haze_04070 Corylus avellana HOM05D006623 ORTHO05D008102 6.0e-78 295.4 374 48.7
Nitab4.5_0011526g0010 Nicotiana tabacum HOM05D006623 ORTHO05D008102 7.8e-78 295.0 356 46.3
Manes.09G176400 Manihot esculenta HOM05D006623 ORTHO05D008102 1.3e-77 294.3 370 47.0
PGSC0003DMG400002774 Solanum tuberosum HOM05D006623 ORTHO05D008102 1.3e-77 294.3 336 48.5
Cpa.g.sc48.154 Carica papaya HOM05D006623 ORTHO05D008102 1.7e-77 293.9 328 50.3
Duzib177G0147 Durio zibethinus HOM05D006623 ORTHO05D008102 1.7e-77 293.9 329 48.9
CANSAT54G2068 Cannabis sativa HOM05D006623 ORTHO05D008102 2.3e-77 293.5 366 45.6
FAN09G0918 Fragaria x ananassa HOM05D006623 ORTHO05D008102 3.0e-77 293.1 358 48.6
Cfa006696 Carpinus fangiana HOM05D006623 ORTHO05D008102 3.9e-77 292.7 379 47.5
Nitab4.5_0000368g0170 Nicotiana tabacum HOM05D006623 ORTHO05D008102 3.9e-77 292.7 351 45.9
HanXRQChr11g0347231 Helianthus annuus HOM05D006623 ORTHO05D008102 6.6e-77 292.0 309 50.5
FvH4_6g07380 Fragaria vesca HOM05D006623 ORTHO05D008102 1.1e-76 291.2 365 48.2
Hund07141 Selenicereus undatus HOM05D006623 ORTHO05D008102 1.9e-76 290.4 371 46.9
MELO3C004192.2 Cucumis melo HOM05D006623 ORTHO05D008102 2.5e-76 290.0 386 44.6
Aqoxy1G01536 Aquilegia oxysepala HOM05D006623 ORTHO05D008102 3.3e-76 289.7 359 47.6
Migut.B00980 Erythranthe guttata HOM05D006623 ORTHO05D008102 5.6e-76 288.9 374 45.5
FAN14G0013 Fragaria x ananassa HOM05D000518 ORTHO05D000737 9.5e-76 288.1 373 46.9
CsaV3_2G007010 Cucumis sativus L. HOM05D006623 ORTHO05D008102 1.2e-75 287.7 346 47.1
ClCG02G014990 Citrullus lanatus HOM05D006623 ORTHO05D008102 1.6e-75 287.3 352 46.6
MSTRG.20386 Avicennia marina HOM05D006623 ORTHO05D008102 2.8e-75 286.6 359 45.4
FAN05G4235 Fragaria x ananassa HOM05D006623 ORTHO05D008102 1.4e-74 284.3 323 49.2
Sc16g0009010 Simmondsia chinensis HOM05D006623 ORTHO05D008102 1.4e-74 284.3 331 48.6
Potri.013G009300 Populus trichocarpa HOM05D006623 ORTHO05D008102 4.0e-74 282.7 378 46.0
Sabra13G0007900 Salix brachista HOM05D006623 ORTHO05D008102 8.9e-74 281.6 367 45.2
AUR62000672 Chenopodium quinoa HOM05D006623 ORTHO05D008102 1.5e-73 280.8 341 46.9
Ah.06g188850 Amaranthus hybridus HOM05D006623 ORTHO05D008102 2.2e-72 276.9 310 47.7
Sed0005688 Sechium edule HOM05D006623 ORTHO05D008102 2.2e-72 276.9 330 47.9
ECA236G3720 Erigeron canadensis HOM05D006623 ORTHO05D008102 6.4e-72 275.4 291 50.5
AUR62005281 Chenopodium quinoa HOM05D006623 ORTHO05D008102 1.9e-71 273.9 343 46.4
EL10Ac4g09820 Beta vulgaris HOM05D006623 ORTHO05D008102 7.1e-71 271.9 376 42.8
Peaxi162Scf00673g00027 Petunia axillaris HOM05D006623 ORTHO05D008102 7.1e-71 271.9 342 47.1
Eucgr.L00270 Eucalyptus grandis HOM05D006623 ORTHO05D008102 9.2e-71 271.6 330 46.7
arahy.Tifrunner.gnm1.ann1.CF3I4Q Arachis hypogaea HOM05D006623 ORTHO05D008102 1.2e-70 271.2 342 46.8
COL.COLO4_04154 Corchorus olitorius HOM05D006623 ORTHO05D008102 1.6e-70 270.8 305 50.2
MBI18_g31673_MAGBIO Magnolia biondii HOM05D006623 ORTHO05D008102 1.6e-70 270.8 370 43.5
Gohir.D08G223000 Gossypium hirsutum HOM05D006623 ORTHO05D008102 3.5e-70 269.6 331 45.9
PSO170G4056 Papaver somniferum HOM05D006623 ORTHO05D008102 4.6e-70 269.2 331 45.0
SalBow7G0710 Salvia bowleyana HOM05D006623 ORTHO05D008102 7.8e-70 268.5 349 44.4
Dinv30881 Davidia involucrata HOM05D006623 ORTHO05D008102 1.0e-69 268.1 261 55.6
QL03p040046 Quercus lobata HOM05D006623 ORTHO05D008102 1.0e-69 268.1 380 44.2
RcHm_v2.0_Chr3g0456981 Rosa chinensis HOM05D006623 ORTHO05D008102 1.3e-69 267.7 297 50.5
arahy.Tifrunner.gnm1.ann1.WHE5ZB Arachis hypogaea HOM05D006623 ORTHO05D008102 1.7e-69 267.3 326 47.2
VMungo0720G1791 Vigna mungo HOM05D006623 ORTHO05D008102 5.1e-69 265.8 345 46.1
PSO357G0307 Papaver somniferum HOM05D006623 ORTHO05D008102 1.1e-68 264.6 319 45.8
QL03p013461 Quercus lobata HOM05D006623 ORTHO05D008102 1.1e-68 264.6 357 45.4
unitig_37.g12622 Utricularia gibba HOM05D006623 ORTHO05D008102 1.1e-68 264.6 311 46.3
Thhalv10023586m.g Eutrema salsugineum HOM05D006623 ORTHO05D008102 3.3e-68 263.1 350 43.7
Glyma.20G098200 Glycine max HOM05D006623 ORTHO05D008102 3.3e-68 263.1 353 44.8
Lalb_Chr02g0147841 Lupinus albus HOM05D006623 ORTHO05D008102 7.3e-68 261.9 362 42.3
Psat6g152160 Pisum sativum HOM05D006623 ORTHO05D008102 7.3e-68 261.9 366 44.3
Medtr1g083995 Medicago truncatula HOM05D006623 ORTHO05D008102 1.2e-67 261.2 350 44.0
Phvul.007G200900 Phaseolus vulgaris HOM05D006623 ORTHO05D008102 2.1e-67 260.4 317 46.4
Actinidia01513 Actinidia chinensis HOM05D006623 ORTHO05D008102 2.8e-67 260.0 328 48.2
CARHR055360 Cardamine hirsuta HOM05D006623 ORTHO05D008102 4.7e-67 259.2 325 45.2
GSVIVG01031231001 Vitis vinifera HOM05D006623 ORTHO05D008102 4.7e-67 259.2 299 48.8
ATR0706G205 Amborella trichopoda HOM05D006623 ORTHO05D008102 6.2e-67 258.8 319 44.5
A03p66650 Brassica napus HOM05D006623 ORTHO05D008102 8.1e-67 258.5 315 46.0
BraA03t15723Z Brassica rapa HOM05D006623 ORTHO05D008102 1.1e-66 258.1 315 45.7
BcaC06g31770 Brassica carinata HOM05D006623 ORTHO05D008102 4.0e-66 256.1 318 45.9
DCAR_005418 Daucus carota HOM05D006623 ORTHO05D008102 6.9e-66 255.4 303 47.2
Lj5g0012217 Lotus japonicus HOM05D006623 ORTHO05D008102 1.2e-65 254.6 337 44.2
Sp2g06490 Schrenkiella parvula HOM05D006623 ORTHO05D008102 2.6e-65 253.4 318 46.2
BcaC02g10735 Brassica carinata HOM05D006623 ORTHO05D008102 4.4e-65 252.7 318 45.6
C04p27160 Brassica napus HOM05D006623 ORTHO05D008102 4.4e-65 252.7 318 45.6
BolC4t24074H Brassica oleracea HOM05D006623 ORTHO05D008102 4.4e-65 252.7 318 45.6
THA.LOC104820665 Tarenaya hassleriana HOM05D006623 ORTHO05D008102 7.6e-65 251.9 329 44.7
Ca_10167_v3 Cicer arietinum L. HOM05D006623 ORTHO05D008102 1.1e-63 248.1 345 41.7
AT1G56345 Arabidopsis thaliana HOM05D006623 ORTHO05D008102 1.2e-62 244.6 323 43.3
CDE01G0410 Ceratophyllum demersum HOM05D006623 ORTHO05D008102 1.2e-62 244.6 324 42.9
AL1G65970 Arabidopsis lyrata HOM05D006623 ORTHO05D008102 2.1e-62 243.8 318 43.7
HPP92_014540 Vanilla planifolia HOM05D006623 ORTHO05D008102 5.6e-60 235.7 321 41.4
Aa31LG2G11510 Aethionema arabicum HOM05D006623 ORTHO05D008102 7.3e-60 235.3 362 39.5
Carub.0002s0780 Capsella rubella HOM05D006623 ORTHO05D008102 7.3e-60 235.3 359 40.1
Os12g0560500 Oryza sativa ssp. japonica HOM05D006623 ORTHO05D008102 7.3e-60 235.3 328 41.8
Zm00001eb137040 Zea mays HOM05D006623 ORTHO05D008102 7.1e-55 218.8 365 38.4
Lju926C10T1 Lonicera japonica HOM05D006623 ORTHO05D008102 3.9e-53 213.0 167 62.3
SHI18063 Sapria himalayana HOM05D006623 ORTHO05D008102 5.6e-52 209.1 317 38.5
Atru.chr2.158 Acer truncatum HOM05D006623 ORTHO05D008102 1.7e-48 197.6 171 57.3
Atru.chr2.159 Acer truncatum HOM05D006623 ORTHO05D008102 1.1e-47 194.9 166 57.8
HanXRQChr04g0096321 Helianthus annuus HOM05D006623 ORTHO05D008102 1.4e-47 194.5 165 55.8
Pp3c21_14480 Physcomitrium patens HOM05D006623 ORTHO05D008102 3.2e-47 193.4 326 36.8
AagrBONN_evm.TU.Sc2ySwM_228.2895 Anthoceros agrestis HOM05D006623 ORTHO05D008102 2.3e-45 187.2 336 34.8
Mapoly0025s0135 Marchantia polymorpha HOM05D006623 ORTHO05D008102 3.3e-44 183.3 349 35.2
Pp3c22_15420 Physcomitrium patens HOM05D006623 ORTHO05D008102 8.4e-40 168.7 326 33.7
SMO367G1184 Selaginella moellendorffii HOM05D006623 ORTHO05D008102 4.2e-39 166.4 314 34.1
MD04G1194000 Malus domestica HOM05D006623 ORTHO05D008102 5.3e-34 149.4 91 73.6
Lj9C221T2 Lonicera japonica HOM05D006623 ORTHO05D008102 1.3e-32 144.8 131 58.8
Lju926P10T13 Lonicera japonica HOM05D006623 ORTHO05D008102 1.2e-25 121.7 97 61.9
MD04G1193800 Malus domestica HOM05D006623 ORTHO05D008102 1.1e-23 115.2 193 39.4
Actinidia01685 Actinidia chinensis HOM05D000518 ORTHO05D000737 5.5e-23 112.8 64 84.4
Nitab4.5_0003512g0100 Nicotiana tabacum HOM05D006623 ORTHO05D008102 8.8e-21 105.5 189 35.4
CBR_g631 Chara braunii HOM05D006623 ORTHO05D008102 2.4e-18 97.4 77 57.1
MCO07G190 Micromonas commoda HOM05D006623 ORTHO05D008102 3.7e-11 73.6 145 41.4
VMungo1228G0002 Vigna mungo HOM05D006623 ORTHO05D008102 4.8e-11 73.2 83 45.8
PRCOL_00002894 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 1.6e-09 68.2 70 48.6
AagrBONN_evm.TU.Sc2ySwM_228.2701 Anthoceros agrestis HOM05D000001 ORTHO05D008102 3.5e-09 67.0 179 25.7
PRCOL_00005185 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 2.9e-08 63.9 76 46.1
Cre02.g144002 Chlamydomonas reinhardtii HOM05D006623 ORTHO05D008102 3.8e-08 63.5 80 45.0
Peaxi162Scf00108g00912 Petunia axillaris HOM05D006791 ORTHO05D008221 1.5e-07 61.6 278 24.5
SEGI_09300 Sequoiadendron giganteum HOM05D006623 ORTHO05D008102 1.5e-07 61.6 39 64.1
Phvul.007G093000 Phaseolus vulgaris HOM05D006791 ORTHO05D008221 1.9e-07 61.2 277 25.3
VMungo0720G1069 Vigna mungo HOM05D006791 ORTHO05D008221 1.9e-07 61.2 277 25.6
Cc02_g11450 Coffea canephora HOM05D006791 ORTHO05D008221 3.2e-07 60.5 277 24.5
Glyma.20G178400 Glycine max HOM05D006791 ORTHO05D008221 3.2e-07 60.5 280 23.6
Potri.008G042000 Populus trichocarpa HOM05D006791 ORTHO05D008221 5.5e-07 59.7 279 25.4
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 7.2e-07 59.3 73 43.8
Solyc02g062520.3 Solanum lycopersicum HOM05D006791 ORTHO05D008221 7.2e-07 59.3 280 23.2
CAN.G131.1 Capsicum annuum HOM05D006791 ORTHO05D008221 1.2e-06 58.5 278 23.7
Ca_05521_v3 Cicer arietinum L. HOM05D004933 ORTHO05D005465 1.2e-06 58.5 77 42.9
Sopen02g013520 Solanum pennellii HOM05D006791 ORTHO05D008221 1.2e-06 58.5 280 22.9
SalBow3G2210 Salvia bowleyana HOM05D006791 ORTHO05D008221 4.7e-06 56.6 282 23.0
Medtr1g095580 Medicago truncatula HOM05D006791 ORTHO05D008221 6.1e-06 56.2 283 25.1
TPR.G1805 Trifolium pratense HOM05D006791 ORTHO05D008221 8.0e-06 55.8 141 28.4


User provided reference genes

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