Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.6e-178 628.6 327 100.0
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 8.8e-150 533.9 321 86.6
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 8.8e-150 533.9 321 86.6
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 5.3e-147 524.6 321 85.4
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 1.0e-145 520.4 305 90.2
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.6e-143 513.1 321 83.8
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.7e-143 512.3 321 82.9
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.4e-142 510.0 322 82.9
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 8.8e-142 507.3 321 82.9
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 8.8e-142 507.3 321 81.3
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 5.7e-141 504.6 321 80.7
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 2.4e-139 499.2 321 79.4
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.5e-136 489.2 323 78.0
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 2.7e-135 485.7 321 78.2
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.5e-133 479.9 323 76.2
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 8.3e-132 474.2 321 76.0
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 5.4e-131 471.5 321 75.7
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 7.0e-131 471.1 325 75.1
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.1e-131 470.7 321 76.6
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.1e-131 470.7 321 76.0
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 9.1e-131 470.7 321 76.6
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.6e-130 469.9 325 75.1
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.0e-130 469.5 321 75.4
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.0e-130 469.5 321 76.6
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 2.7e-130 469.2 321 75.1
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.5e-130 468.8 321 75.7
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.5e-130 468.4 325 75.4
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 5.9e-130 468.0 321 76.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.0e-129 467.2 321 75.4
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.9e-129 465.7 321 76.6
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.9e-129 465.7 321 75.4
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 5.0e-129 464.9 321 74.5
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 5.0e-129 464.9 322 75.2
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 6.6e-129 464.5 321 75.4
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 8.6e-129 464.2 321 75.1
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.1e-128 463.8 321 74.1
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-128 463.4 321 74.5
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.5e-128 463.4 321 75.4
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 4.2e-128 461.8 321 75.1
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 5.5e-128 461.5 322 74.8
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 1.2e-127 460.3 321 73.5
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.2e-127 460.3 321 75.7
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.2e-127 460.3 321 74.1
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 2.1e-127 459.5 321 74.8
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 2.1e-127 459.5 321 74.8
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 3.6e-127 458.8 323 74.6
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.7e-127 458.4 321 75.4
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 8.0e-127 457.6 321 74.8
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.2e-125 453.8 322 73.9
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 2.2e-124 449.5 313 74.4
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 2.2e-124 449.5 325 71.7
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.2e-124 449.5 322 72.0
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 2.8e-124 449.1 321 72.6
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.7e-124 448.7 323 72.8
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 4.9e-124 448.4 321 73.2
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.4e-123 446.8 321 73.2
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 3.2e-123 445.7 321 72.9
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 3.2e-123 445.7 321 72.9
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.6e-122 443.4 321 71.0
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.5e-122 442.2 323 71.5
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 3.5e-122 442.2 321 72.9
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.5e-122 442.2 321 72.3
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 1.0e-121 440.7 323 71.2
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 2.3e-121 439.5 321 72.6
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 3.9e-121 438.7 321 71.3
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 5.0e-121 438.3 325 71.4
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 6.6e-121 438.0 326 70.9
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 8.6e-121 437.6 328 71.6
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 8.6e-121 437.6 321 71.3
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 1.1e-120 437.2 323 70.6
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.1e-120 437.2 307 74.3
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.1e-120 437.2 324 70.7
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 2.5e-120 436.0 321 71.7
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.3e-120 435.6 321 71.0
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.3e-120 435.3 329 71.4
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 5.6e-120 434.9 323 70.6
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 5.6e-120 434.9 321 70.7
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 9.5e-120 434.1 323 72.4
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.6e-119 433.3 321 71.0
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.1e-119 433.0 323 71.5
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 2.8e-119 432.6 323 71.8
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.7e-119 431.8 323 69.7
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.7e-119 431.8 323 69.7
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.4e-118 430.3 323 69.3
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 3.1e-118 429.1 331 68.6
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 4.0e-118 428.7 321 69.5
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.2e-117 427.2 323 69.3
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 2.0e-117 426.4 305 73.4
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.9e-116 422.5 327 69.1
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.4e-116 421.4 323 69.0
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 6.4e-116 421.4 297 72.7
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.4e-115 419.5 305 72.5
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.1e-115 418.7 305 72.1
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 9.2e-115 417.5 321 69.8
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 2.7e-114 416.0 326 70.2
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 3.5e-114 415.6 321 70.7
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 5.0e-113 411.8 322 67.4
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.5e-112 409.5 321 68.5
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 7.3e-112 407.9 328 67.1
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 4.7e-111 405.2 325 68.0
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.2e-110 401.7 321 65.7
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 5.2e-110 401.7 321 67.6
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 6.8e-110 401.4 325 67.7
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.0e-109 399.8 326 67.5
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 5.8e-109 398.3 327 65.7
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 9.8e-109 397.5 329 66.3
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 9.8e-109 397.5 321 67.9
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.7e-108 396.7 327 66.1
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.9e-108 396.0 321 64.8
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 3.7e-108 395.6 327 65.7
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 4.9e-108 395.2 327 65.4
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 1.1e-107 394.0 325 67.1
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 3.2e-107 392.5 323 65.6
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 4.1e-107 392.1 323 65.3
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 4.1e-107 392.1 323 65.3
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 4.1e-107 392.1 323 65.0
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 5.4e-107 391.7 323 64.4
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 7.1e-107 391.3 323 65.3
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.6e-106 390.2 323 65.0
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.7e-106 389.4 326 64.7
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.3e-105 387.1 329 64.7
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 3.0e-105 386.0 322 67.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.1e-104 384.0 323 67.5
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 4.3e-104 382.1 448 51.6
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 9.5e-104 380.9 323 67.5
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 2.8e-103 379.4 314 66.6
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.1e-102 377.5 326 63.8
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 2.0e-93 346.7 326 56.1
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 3.4e-93 345.9 288 64.2
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 7.8e-90 334.7 325 59.4
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 6.2e-87 325.1 256 67.2
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 9.9e-85 317.8 252 66.7
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 1.3e-73 280.8 329 49.8
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.0e-73 279.6 325 49.2
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 6.2e-71 271.9 333 46.2
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 4.9e-68 262.3 334 45.5
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.6e-63 247.3 336 51.2
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.7e-53 211.8 153 75.2
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 4.6e-50 202.6 363 37.7
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.3e-49 200.3 169 66.3
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 6.3e-47 192.2 385 36.1
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 1.1e-43 181.4 244 44.7
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.9e-43 180.6 233 46.4
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 2.7e-42 176.8 162 63.0
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.4e-40 168.7 154 55.2
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 3.7e-39 166.4 138 64.5
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 2.5e-27 127.1 69 91.3
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 8.0e-26 122.1 69 88.4
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 9.8e-24 115.2 161 39.8
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.7e-23 114.4 104 56.7
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 7.7e-21 105.5 137 43.1
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.7e-20 104.4 57 93.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 8.5e-20 102.1 74 70.3
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.2e-18 98.2 83 51.8
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 2.1e-18 97.4 172 36.0
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 1.5e-16 91.3 51 86.3
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 1.3e-15 88.2 51 84.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 1.3e-15 88.2 59 76.3
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 2.5e-11 73.9 90 50.0
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 1.6e-10 71.2 117 35.0
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.1e-10 70.9 59 61.0


User provided reference genes

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