Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18056 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 2.4e-248 861.7 426 100.0
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 1.0e-145 520.8 381 69.6
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 2.1e-111 406.8 319 66.1
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 2.0e-101 373.6 322 61.2
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 1.0e-97 361.3 318 59.1
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 2.5e-96 356.7 318 59.4
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 5.6e-96 355.5 318 59.1
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 2.1e-95 353.6 330 56.7
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 1.4e-94 350.9 318 58.2
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 4.0e-94 349.4 318 58.5
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 4.4e-93 345.9 332 55.1
Cpa.g.sc72.50 Carica papaya HOM05D006162 ORTHO05D007627 1.3e-92 344.4 318 56.6
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 3.7e-92 342.8 319 56.7
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 8.3e-92 341.7 324 56.5
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 1.4e-91 340.9 318 59.7
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 1.4e-91 340.9 312 57.7
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 2.4e-91 340.1 325 56.3
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 4.6e-90 335.9 318 55.7
Atru.chr4.714 Acer truncatum HOM05D006162 ORTHO05D007627 6.0e-90 335.5 321 56.1
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 2.3e-89 333.6 319 55.5
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 3.0e-89 333.2 330 54.5
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 3.9e-89 332.8 319 54.9
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 3.9e-89 332.8 317 54.3
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 3.9e-89 332.8 317 54.3
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 2.5e-88 330.1 318 55.0
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 9.5e-88 328.2 317 53.9
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.6e-87 327.4 320 54.7
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.6e-87 327.4 330 54.2
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 3.6e-87 326.2 320 54.4
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 3.6e-87 326.2 320 57.2
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 8.1e-87 325.1 321 54.8
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 1.2e-85 321.2 295 59.7
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 3.8e-84 316.2 308 53.9
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 2.1e-82 310.5 308 57.1
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 3.5e-82 309.7 320 49.4
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 6.0e-82 308.9 320 53.1
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 7.8e-82 308.5 294 55.1
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.3e-81 307.8 337 50.4
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 2.3e-81 307.0 334 53.0
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 2.3e-81 307.0 320 48.8
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 2.5e-80 303.5 261 60.9
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 9.6e-80 301.6 321 53.0
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 1.6e-79 300.8 350 48.9
DCAR_011465 Daucus carota HOM05D006162 ORTHO05D007627 3.1e-78 296.6 333 49.5
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 9.0e-78 295.0 322 48.8
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 1.7e-76 290.8 284 54.2
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 6.4e-76 288.9 334 48.8
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.9e-75 287.3 314 48.4
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 9.3e-75 285.0 294 51.7
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 2.3e-73 280.4 323 49.5
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 3.0e-73 280.0 294 51.4
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 6.6e-73 278.9 294 50.7
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 8.7e-73 278.5 293 50.2
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 1.9e-72 277.3 284 50.7
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 7.3e-72 275.4 314 48.1
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 9.6e-72 275.0 311 48.6
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 2.8e-71 273.5 287 51.2
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 2.8e-71 273.5 283 51.2
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 3.6e-71 273.1 303 48.2
Lalb_Chr13g0296311 Lupinus albus HOM05D006162 ORTHO05D007627 3.6e-71 273.1 310 49.0
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 4.8e-71 272.7 250 57.6
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 6.2e-71 272.3 284 51.4
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 8.1e-71 271.9 287 52.3
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 1.8e-70 270.8 314 46.5
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 5.3e-70 269.2 287 50.9
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 6.9e-70 268.9 294 50.0
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 2.0e-69 267.3 289 47.8
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 2.6e-69 266.9 291 48.1
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 2.6e-69 266.9 289 48.1
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 2.6e-69 266.9 289 48.1
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 2.2e-68 263.8 289 49.5
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 4.9e-68 262.7 323 48.0
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 3.2e-67 260.0 245 54.7
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 9.3e-67 258.5 287 50.9
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 2.3e-65 253.8 284 47.5
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 2.3e-65 253.8 284 47.5
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 6.7e-65 252.3 294 47.3
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 1.9e-64 250.8 280 47.9
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 9.6e-64 248.4 307 44.0
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 3.7e-63 246.5 334 43.7
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 2.4e-62 243.8 316 44.0
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 1.2e-61 241.5 285 48.1
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 2.6e-61 240.4 303 46.2
Hma1.2p1_1688F.1_g297590 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 2.7e-58 230.3 175 62.3
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 8.7e-57 225.3 190 58.9
CARHR247340 Cardamine hirsuta HOM05D006162 ORTHO05D007627 3.7e-55 219.9 256 48.8
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 2.4e-54 217.2 171 62.0
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 3.1e-54 216.9 173 62.4
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 4.0e-54 216.5 310 44.2
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 3.8e-52 209.9 170 61.8
Lj1g0016947 Lotus japonicus HOM05D006162 ORTHO05D007627 8.4e-52 208.8 298 42.6
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 4.8e-47 193.0 235 45.1
Lj1g0027635 Lotus japonicus HOM05D006162 ORTHO05D007627 9.0e-46 188.7 253 43.5
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 1.0e-44 185.3 282 39.4
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 8.5e-44 182.2 145 62.8
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 9.4e-43 178.7 162 52.5
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.2e-42 178.3 314 35.7
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 8.8e-41 172.2 194 49.5
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.2e-34 151.8 215 42.3
Pp3c18_18540 Physcomitrium patens HOM05D006162 ORTHO05D007627 7.9e-34 149.1 290 33.4
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 1.8e-33 147.9 300 34.0
Mapoly0008s0182 Marchantia polymorpha HOM05D006162 ORTHO05D007627 5.1e-33 146.4 317 34.1
Hma1.2p1_0220F.1_g092940 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 3.7e-31 140.2 150 53.3
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 3.7e-31 140.2 285 32.6
Peaxi162Scf00025g03225 Petunia axillaris HOM05D006162 ORTHO05D007627 6.7e-25 119.4 139 51.1
CBR_g28670 Chara braunii HOM05D006162 ORTHO05D007627 2.2e-23 114.4 282 27.7
Zm00001eb159190 Zea mays HOM05D006162 ORTHO05D007627 1.4e-22 111.7 131 48.9
Sc16g0004080 Simmondsia chinensis HOM05D006162 ORTHO05D007627 1.8e-22 111.3 140 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1435 Anthoceros agrestis HOM05D006162 ORTHO05D007627 8.5e-20 102.4 295 30.8
Solyc04g051400.2 Solanum lycopersicum HOM05D006162 ORTHO05D007627 6.1e-18 96.3 140 42.9
arahy.Tifrunner.gnm1.ann1.NX5YGM Arachis hypogaea HOM05D006162 ORTHO05D007627 2.2e-15 87.8 127 43.3
Lj1g0005085 Lotus japonicus HOM05D006162 ORTHO05D007627 3.7e-15 87.0 92 51.1
arahy.Tifrunner.gnm1.ann1.RXB70W Arachis hypogaea HOM05D005572 ORTHO05D007627 9.1e-14 82.4 147 34.7
arahy.Tifrunner.gnm1.ann1.PN8NU7 Arachis hypogaea HOM05D006162 ORTHO05D007627 1.3e-12 78.6 71 59.2
arahy.Tifrunner.gnm1.ann1.1RFJ6T Arachis hypogaea HOM05D005572 ORTHO05D007627 5.5e-11 73.2 50 66.0
Os04g0429200 Oryza sativa ssp. japonica HOM05D006162 ORTHO05D007627 4.0e-09 67.0 98 43.9
SMO364G0888 Selaginella moellendorffii HOM05D001091 ORTHO05D001020 3.4e-08 63.9 184 26.6
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 4.4e-08 63.5 255 23.9
Gohir.A13G179300 Gossypium hirsutum HOM05D000344 ORTHO05D003478 1.7e-07 61.6 260 25.8
CAN.G212.11 Capsicum annuum HOM05D006162 ORTHO05D007627 2.2e-07 61.2 101 41.6
SGA_v2.0_scaffold183G39893 Striga asiatica HOM05D000344 ORTHO05D003478 2.8e-07 60.8 259 27.0
CiPaw.15G176800 Carya illinoinensis HOM05D000344 ORTHO05D005296 4.9e-07 60.1 226 25.7
AUR62007076 Chenopodium quinoa HOM05D001091 ORTHO05D001020 8.3e-07 59.3 209 27.8
AUR62019940 Chenopodium quinoa HOM05D001091 ORTHO05D001020 8.3e-07 59.3 209 27.8
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 8.3e-07 59.3 241 25.7
AT1G32850 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 1.1e-06 58.9 208 25.5
Gohir.D13G187400 Gossypium hirsutum HOM05D000344 ORTHO05D003478 1.1e-06 58.9 260 25.8
Gorai.010G244700 Gossypium raimondii HOM05D000344 ORTHO05D003478 1.1e-06 58.9 260 25.8
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 1.1e-06 58.9 237 26.6
Nn5g28803 Nelumbo nucifera HOM05D006162 ORTHO05D007627 1.4e-06 58.5 106 37.7
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 1.4e-06 58.5 288 26.7
Zm00001eb026810 Zea mays HOM05D001091 ORTHO05D001020 1.4e-06 58.5 208 25.0
Ah.06g187440 Amaranthus hybridus HOM05D000344 ORTHO05D005714 2.4e-06 57.8 231 25.5
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 2.4e-06 57.8 241 24.9
MSTRG.15003 Avicennia marina HOM05D000344 ORTHO05D005714 2.4e-06 57.8 250 24.8
VMungo1080G1465 Vigna mungo HOM05D000344 ORTHO05D005714 3.1e-06 57.4 246 24.0
AL1G47120 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 4.1e-06 57.0 208 25.0
Thhalv10006750m.g Eutrema salsugineum HOM05D001091 ORTHO05D001020 4.1e-06 57.0 210 25.2
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 5.4e-06 56.6 226 26.1
PSO063G1798 Papaver somniferum HOM05D001091 ORTHO05D001020 5.4e-06 56.6 187 29.4
PSO782G3112 Papaver somniferum HOM05D001091 ORTHO05D001020 5.4e-06 56.6 187 29.4
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 5.4e-06 56.6 226 25.2
Sp6g06860 Schrenkiella parvula HOM05D001091 ORTHO05D001020 5.4e-06 56.6 193 25.9
Aa31LG6G7480 Aethionema arabicum HOM05D001091 ORTHO05D001020 7.0e-06 56.2 210 24.8
EL10Ac5g12401 Beta vulgaris HOM05D001091 ORTHO05D001020 7.0e-06 56.2 210 27.6
ClCG01G001440 Citrullus lanatus HOM05D001091 ORTHO05D001020 7.0e-06 56.2 197 28.4
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 7.0e-06 56.2 226 25.2
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 7.0e-06 56.2 226 25.7
Gohir.D12G242700 Gossypium hirsutum HOM05D001091 ORTHO05D001020 7.0e-06 56.2 201 26.4
Gorai.008G259900 Gossypium raimondii HOM05D001091 ORTHO05D001020 7.0e-06 56.2 201 26.4
Nitab4.5_0002267g0010 Nicotiana tabacum HOM05D000344 ORTHO05D003478 7.0e-06 56.2 282 24.1
Sp1g28150 Schrenkiella parvula HOM05D001091 ORTHO05D001020 7.0e-06 56.2 208 25.5
AL6G44620 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 9.1e-06 55.8 202 24.8
C05p32320 Brassica napus HOM05D001091 ORTHO05D001020 9.1e-06 55.8 208 25.0
BolC5t31964H Brassica oleracea HOM05D001091 ORTHO05D001020 9.1e-06 55.8 208 25.0
FAN23G3131 Fragaria x ananassa HOM05D000344 ORTHO05D003478 9.1e-06 55.8 257 26.1
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 9.1e-06 55.8 226 25.7
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 9.1e-06 55.8 226 25.7
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 9.1e-06 55.8 226 25.2


User provided reference genes

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