Gene: AT4G39370

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G39370
  • Transcript Identifier AT4G39370.1
  • Gene Type Coding gene
  • Location Chr4 : 18306392-18308625 : positive

Gene Family Information

  • ID HOM05D006162
  • #Genes/#Species 129/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G39370.1
  • symbol UBP27
  • uniprot Q9FPS0

Descriptions

  • Description ubiquitin-specific protease 27
  • Computational description ubiquitin-specific protease 27 (UBP27); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 23 (TAIR:AT5G57990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IBA
IEA
Gene Ontologyprotein deubiquitination1
GO:0016579
IEA
InterProprotein deubiquitination
GO:0006508
IEA
GOA Databaseproteolysis
GO:0006511
IEA
Gene Ontologyubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004197
IBA
Gene Ontologycysteine-type endopeptidase activity1
GO:0004843
IEA
GOA Databasethiol-dependent deubiquitinase
GO:0004843
IDA
IBA
Gene Ontologythiol-dependent deubiquitinase1 2
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0008233
IDA
Gene Ontologypeptidase activity2
GO:0008234
IEA
GOA Databasecysteine-type peptidase activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005634
IBA
Gene Ontologynucleus1
GO:0005829
IBA
Gene Ontologycytosol1
GO:0031966
IDA
Gene Ontologymitochondrial membrane2
GO:0031307
IDA
Gene Ontologyintegral component of mitochondrial outer membrane2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765 Papain-like cysteine peptidase superfamily
Mapman id Description
19.2.3.1.1.12 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.ubiquitin deconjugation.UBP deubiquitinase activities.deubiquitinase (UBP27)