Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 2305.0 1145 100.0
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1781.9 1222 76.3
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1776.1 1145 79.2
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1628.6 1148 72.3
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1620.9 1146 72.3
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1605.1 1146 71.7
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1605.1 1147 71.7
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1593.6 1148 71.2
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1590.5 1146 70.3
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1590.5 1146 69.6
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1587.0 1146 69.8
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1584.3 1146 69.6
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1578.9 1147 70.3
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1572.4 1145 69.9
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1571.6 1146 69.5
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1569.7 1147 69.6
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1564.7 1146 68.8
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1554.3 1145 69.3
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1553.1 1148 68.3
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1550.4 1145 68.6
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1548.1 1146 68.9
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1545.4 1148 68.6
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1541.6 1148 68.0
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1540.0 1146 68.4
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1539.2 1146 67.7
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1535.4 1146 68.1
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1534.6 1146 67.8
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1533.9 1147 68.6
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1529.6 1145 67.7
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1525.0 1211 65.2
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1524.2 1156 67.6
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1524.2 1152 68.4
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1523.8 1037 75.9
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1523.8 1156 67.6
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1521.1 1147 67.8
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1519.2 1149 67.9
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1518.1 1050 74.0
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1516.9 1142 67.2
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1514.6 1152 66.7
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1513.0 1129 68.2
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1511.9 1147 66.3
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1510.0 1147 66.2
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1509.2 1133 68.3
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1501.5 1145 66.6
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1500.7 1146 67.4
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1500.3 1144 65.7
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1496.9 1232 63.6
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1494.9 1147 67.0
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1493.0 1146 65.8
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1491.5 1146 66.7
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1489.2 1146 67.3
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1486.9 1147 65.6
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1486.5 1146 66.4
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1481.8 1147 66.7
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1480.3 1146 66.2
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1479.9 1146 66.5
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1478.8 1146 66.4
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1472.2 1145 64.6
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1145 65.9
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1145 65.3
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1151 64.7
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1466.8 1142 66.4
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1466.4 1151 64.6
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1464.1 1149 64.3
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1457.6 1147 64.0
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1454.9 1131 66.4
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1453.7 1148 63.8
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1449.5 1149 65.4
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1448.3 1145 64.9
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1446.8 1146 64.0
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1446.8 1149 63.7
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1445.6 1147 63.7
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1441.8 1149 63.8
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1436.4 1148 63.4
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1436.4 1145 64.9
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1434.5 954 77.5
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1427.5 1152 64.3
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1415.6 1154 63.5
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1411.4 1146 62.5
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1408.3 1147 64.3
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1407.5 1145 63.2
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1402.5 1150 62.4
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1400.2 1183 61.3
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1400.2 1150 61.6
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1393.6 1068 66.8
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1385.5 1352 55.0
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1385.5 1154 62.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1307.4 932 70.5
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1280.8 1144 58.7
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1232.2 886 71.0
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1228.8 931 66.1
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1127.9 876 65.0
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1097.4 1049 56.7
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1081.2 1169 50.7
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 3.9e-311 1071.6 879 63.5
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.0e-298 1030.4 1152 48.5
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 5.8e-281 971.5 1161 47.1
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 7.3e-276 954.5 633 74.6
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.5e-265 920.2 870 56.8
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 3.5e-254 882.5 659 66.2
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 9.0e-250 867.8 1042 49.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.1e-243 846.7 518 78.8
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 3.1e-242 842.8 517 76.8
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 8.0e-214 748.4 470 74.5
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-212 744.6 452 76.8
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 3.3e-212 743.0 450 76.4
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 4.8e-211 739.2 453 76.4
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.5e-207 727.6 471 73.0
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 2.3e-205 720.3 496 68.8
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 4.8e-203 712.6 455 72.7
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 4.1e-202 709.5 444 73.9
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 7.0e-202 708.8 450 76.0
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.0e-201 707.2 797 50.6
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.4e-197 694.5 700 57.0
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 9.8e-196 688.3 451 71.4
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 1.2e-193 681.4 449 73.3
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 2.4e-186 657.1 485 65.4
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 4.0e-173 613.2 449 67.9
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 3.0e-168 597.0 461 63.8
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 4.4e-164 583.2 450 62.9
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 7.6e-164 582.4 402 72.9
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 7.8e-161 572.4 519 58.4
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 4.4e-156 556.6 366 73.8
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.4e-149 534.3 366 71.3
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.4e-146 523.1 391 68.0
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.2e-132 478.8 1212 30.3
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 3.5e-121 440.7 242 87.6
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 4.6e-121 440.3 267 77.5
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.8e-117 428.3 286 74.5
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 7.2e-114 416.4 271 76.8
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 5.7e-103 380.2 266 72.6
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 9.7e-103 379.4 250 75.2
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.7e-102 378.6 213 84.0
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.8e-102 377.1 246 73.6
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 3.5e-100 370.9 323 60.1
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 2.0e-76 292.0 156 87.8
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 8.6e-67 260.0 210 62.9
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 1.0e-64 253.1 291 47.1
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 2.7e-60 238.4 206 61.7
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 1.1e-53 216.5 183 64.5
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 3.2e-45 188.3 121 72.7
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.1e-44 185.7 156 60.3
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 7.8e-44 183.7 155 63.2
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 8.9e-40 170.2 183 53.0
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 2.6e-39 168.7 110 75.5
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 8.1e-33 147.1 97 74.2
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 1.8e-32 146.0 106 69.8
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 7.1e-29 134.0 142 52.1
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 3.5e-28 131.7 142 51.4
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 6.0e-28 131.0 83 69.9
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.7e-27 129.4 96 65.6
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 4.8e-25 121.3 96 62.5
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 8.1e-25 120.6 85 62.4
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 2.4e-21 109.0 55 85.5
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 7.1e-21 107.5 69 72.5
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 3.5e-20 105.1 81 64.2
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 7.9e-20 104.0 77 67.5
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 7.4e-18 97.4 76 69.7
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.1e-16 93.6 53 83.0
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 3.1e-16 92.0 61 65.6
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.9e-14 85.5 74 58.1
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 2.9e-14 85.5 86 50.0
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 9.3e-13 80.5 59 66.1
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 6.0e-12 77.8 44 79.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.9e-11 75.1 74 52.7
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.5e-10 73.2 61 60.7
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 4.8e-09 68.2 41 70.7
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.4e-08 66.6 53 66.0
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 3.4e-07 62.0 44 61.4


User provided reference genes

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