Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 0.0e+00 1646.7 811 100.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1306.2 809 80.2
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1277.7 809 78.6
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1160.6 716 80.4
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1155.6 812 70.2
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1150.2 809 70.2
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1148.3 809 69.8
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 0.0e+00 1127.5 847 66.9
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1121.7 810 69.9
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1121.3 809 68.6
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1120.9 809 68.6
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 0.0e+00 1116.3 809 70.0
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1112.1 810 69.5
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1111.3 808 68.4
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 0.0e+00 1106.7 809 68.6
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 0.0e+00 1104.7 811 67.6
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1104.4 809 67.0
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 0.0e+00 1104.0 814 68.2
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1103.2 806 67.5
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1102.4 809 68.4
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 0.0e+00 1101.7 815 68.5
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 0.0e+00 1096.3 810 68.3
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1096.3 805 68.1
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 0.0e+00 1095.9 813 68.3
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1092.4 805 67.5
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 0.0e+00 1083.2 811 68.4
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 0.0e+00 1075.1 811 67.2
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 3.9e-311 1071.2 769 68.8
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.9e-310 1068.9 810 66.9
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.2e-310 1067.0 808 66.6
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.6e-309 1065.8 833 65.4
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.6e-309 1064.7 810 66.3
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 7.9e-309 1063.5 811 65.5
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 8.7e-308 1060.1 810 64.9
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.1e-307 1059.7 810 64.8
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 5.7e-307 1057.4 820 66.3
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.7e-306 1055.8 803 65.4
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.7e-306 1055.8 810 66.5
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.2e-306 1055.4 810 66.0
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 2.8e-306 1055.0 756 70.0
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.8e-306 1055.0 812 66.4
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.1e-305 1053.1 810 64.6
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.4e-305 1052.7 809 64.9
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.4e-302 1042.7 812 64.7
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 4.2e-302 1041.2 816 65.2
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 4.2e-302 1041.2 815 65.4
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.4e-300 1036.2 850 63.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 3.0e-300 1035.0 812 63.5
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 5.1e-300 1034.2 810 64.1
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 3.3e-299 1031.6 811 64.0
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.4e-299 1031.2 809 65.0
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 7.4e-299 1030.4 792 65.5
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 3.7e-298 1028.1 811 65.0
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 3.1e-297 1025.0 734 69.8
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 3.1e-297 1025.0 785 65.9
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 3.1e-297 1025.0 809 64.6
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 2.9e-295 1018.5 809 64.4
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.1e-294 1016.5 812 64.5
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.1e-294 1016.5 824 63.3
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.2e-294 1014.6 815 62.6
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 3.9e-292 1008.1 827 63.8
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.0e-291 1005.7 824 62.7
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.7e-290 1001.5 824 62.3
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 8.2e-290 1000.3 824 62.3
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.8e-289 999.2 824 62.3
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 3.1e-289 998.4 808 64.1
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 7.0e-289 997.3 812 63.5
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 2.6e-288 995.3 827 63.0
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.3e-287 993.0 815 62.2
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.5e-286 988.8 612 79.9
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 4.2e-286 988.0 816 60.8
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 5.5e-286 987.6 810 61.9
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.4e-286 986.9 826 62.2
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 9.4e-286 986.9 826 62.2
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.7e-283 977.6 826 61.6
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 2.8e-282 975.3 829 60.6
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.8e-282 974.5 824 61.3
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 8.2e-282 973.8 811 63.6
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 2.0e-280 969.1 816 60.8
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.7e-280 968.8 823 61.2
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.8e-279 964.9 829 60.0
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 5.0e-279 964.5 815 60.6
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.5e-278 963.0 829 59.7
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.5e-278 961.1 824 60.3
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 7.2e-278 960.7 806 61.4
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 7.2e-278 960.7 812 61.1
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.6e-277 959.5 820 60.4
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 3.6e-277 958.4 753 62.5
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.8e-276 956.1 823 59.7
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 4.0e-276 954.9 810 61.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.8e-276 953.7 826 60.7
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 4.4e-275 951.4 805 60.7
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 2.8e-274 948.7 823 59.7
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 2.8e-274 948.7 823 59.7
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.1e-273 946.8 854 58.9
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 5.9e-272 941.0 823 59.2
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.3e-271 939.1 813 60.1
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 8.6e-271 937.2 823 59.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.5e-270 936.4 813 59.9
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.5e-270 936.4 809 60.9
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.9e-270 936.0 823 59.1
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.9e-270 936.0 818 59.8
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 2.5e-270 935.6 812 59.6
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.8e-269 932.2 819 59.7
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.0e-268 930.2 812 59.9
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.4e-268 929.9 808 60.3
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 4.4e-267 924.9 827 58.5
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.1e-265 918.7 787 59.0
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 9.2e-265 917.1 821 58.5
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 8.6e-263 910.6 850 57.1
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.1e-262 910.2 759 62.6
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.5e-259 899.8 810 57.7
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.4e-259 898.7 817 57.5
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 9.8e-259 897.1 712 63.2
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.7e-258 896.3 826 57.0
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.3e-258 894.0 788 57.4
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 9.2e-257 890.6 811 57.1
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 1.2e-256 890.2 811 57.1
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.6e-256 889.8 811 57.8
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.7e-256 889.0 813 57.1
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.5e-256 888.6 821 57.6
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 6.0e-256 887.9 810 56.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 7.8e-256 887.5 811 57.2
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.0e-255 885.6 815 57.9
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 3.0e-255 885.6 823 57.8
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 5.6e-254 881.3 811 56.4
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 9.5e-254 880.6 811 56.7
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.6e-253 879.8 826 57.7
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.2e-252 874.8 820 55.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 4.4e-251 871.7 811 56.0
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 9.2e-249 864.0 812 56.4
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 3.3e-246 855.5 822 56.4
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.1e-244 850.5 813 55.1
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 8.9e-244 847.4 804 54.0
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 2.9e-242 842.4 809 54.4
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 2.5e-238 829.3 803 55.3
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.1e-233 813.9 804 54.0
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.2e-229 800.4 806 54.1
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.9e-225 786.6 812 53.9
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 5.1e-223 778.5 786 54.3
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 6.6e-223 778.1 814 51.5
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 2.4e-220 769.6 714 56.3
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 4.3e-198 695.7 605 61.7
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 8.5e-186 654.8 730 50.1
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.8e-175 620.5 408 75.5
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.7e-168 596.7 881 40.3
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 2.1e-152 543.9 847 37.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.3e-149 531.9 902 37.6
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.6e-145 519.2 407 62.9
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.8e-144 516.9 913 36.5
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.1e-135 486.9 299 81.6
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 4.7e-128 463.0 455 54.5
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 3.1e-127 460.3 322 71.1
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 9.9e-126 455.3 839 35.2
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.2e-117 427.6 643 39.2
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.4e-103 380.9 481 46.6
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.0e-102 377.9 219 83.1
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 1.9e-97 361.3 267 69.3
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 3.8e-85 320.5 320 52.8
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 1.5e-73 282.0 157 84.7
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.4e-68 265.4 671 31.6
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.5e-68 264.6 191 70.7
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 2.7e-67 261.2 249 57.4
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 7.9e-67 259.6 230 59.6
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.1e-60 239.2 833 26.5
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 9.4e-52 209.5 207 58.0
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 9.1e-47 193.0 122 77.0
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.4e-42 179.1 551 29.2
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 3.0e-42 177.9 209 48.3
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.4e-41 174.1 104 77.9
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.2e-40 171.8 786 25.2
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 5.4e-39 167.2 199 48.2
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 7.0e-39 166.8 111 73.9
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.6e-36 157.1 158 55.1
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 1.5e-33 149.1 103 71.8
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.3e-32 146.0 593 24.1
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.4e-26 125.9 114 59.6
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.4e-25 121.3 75 77.3
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.5e-25 120.2 75 77.3
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.7e-24 119.0 75 76.0
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.2e-23 113.2 75 72.0
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 3.5e-22 111.3 93 61.3
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.6e-17 95.1 59 74.6
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.0e-14 84.0 75 61.3
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 4.9e-08 64.3 106 38.7


User provided reference genes

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