Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 8.4e-292 1006.5 594 100.0
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 3.7e-170 602.4 697 58.8
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 1.4e-166 590.5 697 60.8
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 4.2e-166 589.0 701 57.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 3.1e-161 572.8 621 61.7
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.8e-156 557.0 698 56.2
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.9e-155 553.5 645 56.4
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.6e-154 550.4 707 55.3
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 8.5e-151 538.1 456 68.0
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.9e-150 537.0 698 53.9
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 2.7e-149 533.1 700 53.1
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 3.6e-149 532.7 703 53.3
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 6.1e-149 531.9 697 55.4
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.8e-148 530.4 690 58.8
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.3e-148 530.0 703 53.3
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.1e-148 528.9 703 53.1
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 6.7e-148 528.5 593 54.8
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 8.8e-148 528.1 695 54.8
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.0e-147 526.9 692 53.2
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 8.2e-146 521.5 700 52.6
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.2e-144 517.7 701 52.2
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.5e-144 517.3 695 52.7
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 2.2e-143 513.5 498 61.8
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.2e-143 513.5 598 62.7
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.9e-143 513.1 698 51.3
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 5.0e-143 512.3 694 51.3
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.4e-142 510.8 709 52.0
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 2.1e-141 506.9 700 53.6
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 7.9e-141 505.0 700 52.0
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.0e-140 503.1 591 53.8
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 8.8e-140 501.5 692 57.1
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.1e-139 501.1 700 50.7
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 4.4e-139 499.2 528 58.0
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 2.2e-138 496.9 586 53.4
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 3.7e-138 496.1 593 52.8
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 3.7e-138 496.1 581 53.2
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 6.3e-138 495.4 710 51.3
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.1e-137 494.6 565 54.3
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 1.4e-137 494.2 689 52.0
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.8e-137 493.8 587 53.7
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 2.4e-137 493.4 502 61.2
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 9.1e-137 491.5 683 56.5
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 3.5e-136 489.6 550 54.7
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 4.5e-136 489.2 479 61.2
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 5.0e-135 485.7 625 57.8
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 1.9e-134 483.8 680 55.1
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 7.2e-134 481.9 697 55.8
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 7.2e-134 481.9 698 54.6
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.2e-133 481.1 689 48.9
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 6.1e-133 478.8 577 53.2
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.4e-132 477.6 694 54.6
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 1.8e-132 477.2 592 53.2
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 2.3e-132 476.9 740 53.4
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 2.3e-132 476.9 607 61.4
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.3e-132 476.9 752 46.0
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 4.0e-132 476.1 695 50.9
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 1.5e-131 474.2 626 52.1
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.7e-130 470.7 633 49.4
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 2.8e-130 469.9 578 52.8
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 4.8e-130 469.2 595 52.4
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 4.8e-130 469.2 555 57.5
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 6.3e-130 468.8 692 54.3
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.4e-129 467.6 595 52.3
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.8e-129 467.2 693 52.5
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.8e-129 467.2 573 63.0
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.4e-129 466.8 503 57.7
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 3.1e-129 466.5 694 54.2
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 3.1e-129 466.5 467 60.2
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 4.5e-128 462.6 686 54.2
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 2.9e-127 459.9 594 50.3
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 8.5e-127 458.4 601 52.4
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 8.5e-127 458.4 577 62.2
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.0e-124 451.4 697 47.8
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 5.2e-124 449.1 486 55.8
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 9.8e-123 444.9 698 47.3
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.4e-121 441.0 519 53.8
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 9.1e-121 438.3 689 50.5
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 4.5e-120 436.0 585 57.6
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 7.7e-120 435.3 688 50.4
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 7.7e-120 435.3 597 48.4
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 1.0e-119 434.9 585 57.4
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.5e-118 430.3 472 56.1
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 4.2e-118 429.5 694 52.3
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.4e-115 419.9 691 50.2
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.2e-112 411.4 594 46.5
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 5.9e-112 409.1 411 58.4
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.5e-110 404.4 679 43.6
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.2e-107 394.8 600 45.3
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.2e-107 394.8 475 52.2
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 2.0e-107 394.0 595 45.5
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 7.5e-107 392.1 517 49.1
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.8e-105 387.5 421 56.1
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 9.2e-105 385.2 587 45.7
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 5.0e-103 379.4 461 50.5
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 8.6e-103 378.6 712 46.1
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 2.5e-102 377.1 470 50.6
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.4e-100 371.3 594 44.3
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 4.7e-93 346.3 461 49.9
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 4.0e-92 343.2 584 43.0
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 5.2e-92 342.8 466 49.1
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 9.9e-91 338.6 467 48.2
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 2.4e-89 334.0 697 42.8
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.6e-88 331.3 592 42.1
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 7.8e-88 328.9 581 42.7
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 7.8e-88 328.9 694 45.2
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.0e-87 328.6 456 48.7
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 3.9e-87 326.6 581 42.5
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.8e-85 320.5 310 62.6
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 6.8e-84 315.8 574 45.8
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 2.0e-83 314.3 419 48.9
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-80 305.1 435 51.5
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.0e-80 302.8 435 52.2
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.0e-79 302.0 435 51.7
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.3e-79 300.8 435 51.3
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.6e-77 294.7 428 44.4
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.4e-76 291.6 406 45.3
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.6e-75 287.3 483 44.9
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 8.7e-71 272.3 420 42.1
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.9e-70 271.2 315 50.5
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 2.5e-70 270.8 476 39.5
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 3.4e-67 260.4 432 41.9
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.6e-59 234.2 555 37.5
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 6.0e-56 223.0 519 35.6
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.9e-54 218.0 310 45.2
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 1.5e-51 208.4 264 53.8
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.6e-51 207.6 296 44.9
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 1.8e-47 194.9 334 41.6
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 4.1e-44 183.7 136 77.9
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.7e-42 178.3 592 31.4
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.9e-38 164.9 175 54.3
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-35 155.2 247 62.3
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 8.5e-34 149.4 154 54.5
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 4.4e-30 137.1 152 55.9
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.8e-20 105.1 348 29.0
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 3.5e-19 100.9 329 30.4
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 5.9e-19 100.1 347 28.0
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 8.5e-18 96.3 218 63.8
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 2.1e-16 91.7 130 50.0
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 3.0e-15 87.8 45 88.9
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 6.7e-15 86.7 254 27.2
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 5.9e-11 73.6 41 82.9
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 3.8e-10 70.9 111 42.3
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 2.7e-08 64.7 65 50.8
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.7e-08 64.7 138 37.0
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 1.8e-07 62.0 148 62.2
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 7.5e-06 56.6 46 63.0


User provided reference genes

Program Settings