Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 0.0e+00 1079.7 563 100.0
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 2.5e-208 729.2 641 64.6
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 8.8e-182 641.0 564 61.5
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 5.9e-178 628.2 561 61.1
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 2.1e-175 619.8 557 59.1
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 8.8e-174 614.4 556 59.5
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 2.8e-172 609.4 557 60.0
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 7.0e-171 604.7 556 58.6
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 1.2e-170 604.0 556 58.8
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 1.0e-169 600.9 556 58.5
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 2.2e-169 599.7 559 58.5
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 3.8e-169 599.0 559 58.5
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 6.5e-169 598.2 555 58.6
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 1.1e-168 597.4 560 57.9
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.9e-168 596.7 526 60.8
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 3.2e-168 595.9 564 61.7
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 6.1e-167 591.7 556 56.5
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 1.0e-166 590.9 559 60.3
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 3.0e-166 589.3 559 57.6
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 4.0e-166 589.0 559 56.7
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 6.8e-166 588.2 567 57.3
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 1.5e-165 587.0 563 57.2
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 2.6e-165 586.3 559 57.2
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 9.8e-165 584.3 559 57.1
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 1.3e-164 583.9 559 57.1
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 8.3e-164 581.3 559 56.9
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 5.4e-163 578.6 558 56.8
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 2.0e-162 576.6 556 56.1
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 4.5e-162 575.5 552 56.7
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 4.5e-162 575.5 558 56.6
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 1.7e-161 573.5 561 56.7
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 5.5e-160 568.5 554 54.9
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 3.0e-158 562.8 558 56.1
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 7.5e-157 558.1 556 54.9
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 2.8e-156 556.2 555 53.3
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 3.7e-156 555.8 556 55.2
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 1.1e-155 554.3 555 53.2
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 1.8e-155 553.5 555 53.2
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 2.4e-155 553.1 559 55.3
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 5.4e-155 552.0 556 53.4
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 2.7e-154 549.7 556 55.8
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 2.3e-153 546.6 556 54.0
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 1.1e-152 544.3 557 53.7
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 1.6e-151 540.4 570 57.0
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 1.0e-150 537.7 525 56.6
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 1.8e-150 537.0 560 53.6
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 5.2e-150 535.4 564 52.1
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 8.9e-150 534.6 556 52.5
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 2.2e-148 530.0 555 55.7
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 3.2e-147 526.2 589 52.5
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 7.0e-147 525.0 557 51.0
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 2.0e-146 523.5 560 53.0
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 3.5e-146 522.7 567 53.3
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 1.6e-143 513.8 559 50.8
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 2.1e-143 513.5 525 53.0
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 8.0e-143 511.5 516 52.7
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 2.6e-141 506.5 563 51.3
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 8.3e-140 501.5 559 50.1
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 8.3e-140 501.5 554 49.6
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 4.1e-139 499.2 558 51.1
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 5.4e-139 498.8 555 49.5
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 1.7e-137 493.8 558 48.4
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 3.0e-137 493.0 548 50.5
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 1.1e-136 491.1 557 49.4
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 1.6e-135 487.3 555 49.2
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 6.2e-135 485.3 555 53.3
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 8.1e-135 485.0 555 50.8
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 6.8e-134 481.9 584 49.5
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 2.0e-133 480.3 553 47.7
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 1.3e-132 477.6 557 48.1
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 6.4e-132 475.3 557 48.3
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 8.3e-132 474.9 557 47.6
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 9.2e-131 471.5 555 47.9
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 6.6e-129 465.3 559 46.9
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 8.6e-129 464.9 559 47.6
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 1.1e-128 464.5 559 47.8
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 4.4e-125 452.6 557 50.1
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 6.4e-124 448.7 567 49.9
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 4.2e-123 446.0 558 46.4
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 7.1e-123 445.3 561 46.3
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 7.1e-123 445.3 365 69.0
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 9.3e-123 444.9 562 45.6
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 1.2e-122 444.5 561 46.3
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 2.1e-122 443.7 516 52.1
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 1.0e-121 441.4 448 54.0
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 6.6e-121 438.7 430 53.0
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 1.3e-119 434.5 557 44.9
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 1.4e-118 431.0 375 66.7
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 2.2e-116 423.7 495 48.9
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 2.6e-109 400.2 555 47.2
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 9.0e-102 375.2 550 44.7
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 1.2e-101 374.8 557 44.9
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 1.0e-84 318.5 349 51.3
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 1.7e-76 291.2 392 44.6
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 1.1e-75 288.5 243 71.6
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 1.0e-68 265.4 286 52.8
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.4e-62 244.2 171 68.4
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 2.8e-55 220.7 526 30.8
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 2.7e-53 214.2 302 41.4
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 2.9e-44 184.1 429 29.1
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 1.5e-43 181.8 208 49.0
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 2.9e-39 167.5 211 49.8
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 4.3e-35 153.7 192 44.8
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 3.1e-33 147.5 233 35.6
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 9.8e-32 142.5 161 47.2
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 1.7e-31 141.7 113 61.1
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 4.9e-31 140.2 122 60.7
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.7e-29 134.4 105 67.6
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 4.6e-29 133.7 154 53.2
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 9.5e-27 125.9 108 63.9
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 2.1e-26 124.8 137 58.4
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 2.8e-26 124.4 67 76.1
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.5e-24 118.6 108 55.6
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 3.9e-20 104.0 61 75.4
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 1.9e-19 101.7 71 69.0
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 1.1e-14 85.9 52 76.9
Psat1g128400 Pisum sativum HOM05D006809 ORTHO05D008609 5.4e-14 83.6 62 69.4
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 2.1e-13 81.6 94 47.9
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 8.6e-12 76.3 38 81.6
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 1.4e-09 68.9 40 75.0
vmacro00391 Vaccinium macrocarpon HOM05D002346 ORTHO05D002452 2.2e-07 61.6 78 42.3
Gohir.D10G106000 Gossypium hirsutum HOM05D000645 ORTHO05D000494 5.4e-06 57.0 294 21.8
Gorai.011G115900 Gossypium raimondii HOM05D000645 ORTHO05D000494 5.4e-06 57.0 294 21.8
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 7.1e-06 56.6 51 62.7


User provided reference genes

Program Settings