Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 1.5e-281 972.2 495 100.0
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 6.9e-207 724.2 495 78.8
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.4e-204 716.5 504 77.4
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 2.0e-193 679.5 495 72.5
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 2.0e-190 669.5 494 72.1
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 8.3e-184 647.5 499 67.7
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 4.1e-183 645.2 493 68.8
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 2.7e-182 642.5 495 68.3
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 2.7e-182 642.5 495 67.3
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 2.7e-182 642.5 495 67.3
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 2.3e-181 639.4 493 67.5
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.8e-179 632.5 534 65.7
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 3.6e-179 632.1 493 68.2
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 3.4e-177 625.5 495 66.1
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 7.5e-177 624.4 499 66.1
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 1.3e-176 623.6 493 66.9
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 3.7e-176 622.1 495 66.1
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 1.8e-175 619.8 495 66.5
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 4.1e-175 618.6 493 66.9
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.0e-174 616.3 494 65.2
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 2.7e-174 615.9 494 66.0
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 4.5e-174 615.1 495 65.5
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 2.3e-173 612.8 494 64.8
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 2.3e-173 612.8 493 65.5
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.9e-173 612.5 496 65.1
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 2.1e-171 606.3 493 64.3
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.8e-171 605.9 494 65.2
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 6.1e-171 604.7 495 65.5
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 8.0e-171 604.4 493 65.1
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 1.0e-170 604.0 493 64.1
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 1.4e-170 603.6 493 64.5
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 1.4e-170 603.6 492 63.2
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 3.0e-170 602.4 493 64.5
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 3.0e-170 602.4 493 64.9
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 6.8e-170 601.3 493 64.3
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 2.0e-169 599.7 494 64.4
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 7.5e-169 597.8 496 64.1
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 1.4e-167 593.6 494 63.6
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 1.8e-167 593.2 494 63.2
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 3.2e-167 592.4 494 63.0
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 4.1e-167 592.0 495 63.2
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 4.1e-167 592.0 494 63.6
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 5.4e-167 591.7 493 63.5
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 5.4e-167 591.7 495 63.2
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 7.0e-167 591.3 494 63.6
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 7.0e-167 591.3 495 64.0
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 7.0e-167 591.3 494 62.8
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 2.0e-166 589.7 492 61.2
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.7e-166 589.3 489 63.4
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 5.9e-166 588.2 492 61.4
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 5.9e-166 588.2 492 60.8
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 7.8e-166 587.8 492 61.4
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 1.0e-165 587.4 494 62.8
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 1.7e-165 586.6 497 63.6
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 3.0e-165 585.9 495 62.8
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 5.0e-165 585.1 494 61.1
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 5.0e-165 585.1 492 60.8
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 5.0e-165 585.1 494 63.2
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 5.0e-165 585.1 494 62.8
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 6.6e-165 584.7 492 60.4
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 9.5e-164 580.9 521 60.8
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 8.0e-163 577.8 492 61.0
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 4.0e-162 575.5 492 60.6
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 4.0e-162 575.5 495 62.0
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 8.9e-162 574.3 494 60.3
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 2.0e-161 573.2 492 59.1
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 4.4e-161 572.0 493 59.4
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 5.8e-161 571.6 493 59.4
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 9.8e-161 570.9 525 59.6
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 2.2e-160 569.7 495 61.8
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 3.2e-159 565.8 515 60.4
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 4.1e-159 565.5 489 58.7
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 9.2e-159 564.3 495 61.4
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 1.7e-157 560.1 494 58.1
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 8.6e-157 557.8 513 60.2
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 2.5e-156 556.2 494 59.5
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 3.3e-156 555.8 521 58.3
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 5.6e-156 555.1 493 60.6
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 4.0e-154 548.9 501 60.5
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 6.8e-154 548.1 529 57.3
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.4e-151 540.4 493 59.4
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 3.2e-151 539.3 494 60.1
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.6e-150 537.0 494 56.5
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.5e-148 530.4 492 59.6
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.4e-146 523.9 484 59.1
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.1e-142 510.0 430 63.3
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 3.6e-139 499.2 493 55.8
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 1.8e-138 496.9 494 56.3
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-137 494.2 535 53.3
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 4.4e-137 492.3 494 55.1
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.7e-134 483.0 431 65.2
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 8.1e-131 471.5 461 56.6
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.1e-130 469.5 515 53.0
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 2.6e-129 466.5 429 57.3
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 7.6e-129 464.9 494 51.4
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.1e-127 461.1 393 63.6
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 2.4e-127 459.9 493 53.1
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 6.7e-117 425.2 271 79.3
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 4.3e-116 422.5 494 49.2
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 7.6e-113 411.8 362 59.7
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 7.1e-111 405.2 498 43.8
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 6.5e-104 382.1 266 72.6
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 3.2e-103 379.8 497 42.1
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 1.5e-97 360.9 545 42.2
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 8.5e-96 355.1 323 60.1
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 4.7e-94 349.4 496 41.1
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 3.0e-93 346.7 317 61.2
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.5e-87 327.0 238 68.5
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.0e-85 321.6 498 38.0
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 4.4e-84 316.2 210 74.3
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 7.7e-81 305.4 497 36.4
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.2e-72 277.3 323 51.1
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 1.2e-65 255.0 308 50.6
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 3.5e-65 253.4 278 51.1
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 4.5e-65 253.1 179 70.9
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 8.3e-59 232.3 378 41.3
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 4.3e-55 219.9 299 41.8
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 2.8e-46 190.7 400 36.0
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.0e-45 186.8 134 71.6
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 2.2e-43 181.0 502 28.3
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 7.8e-41 172.6 98 79.6
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.9e-39 167.9 506 26.5
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 7.3e-39 166.0 549 27.3
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.7e-38 163.3 156 55.1
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.8e-37 161.4 527 26.0
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.4e-36 156.8 96 76.0
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.2e-34 149.1 96 69.8
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.2e-34 149.1 96 69.8
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.6e-30 137.1 138 53.6
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-27 128.6 94 64.9
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 7.1e-26 122.9 70 85.7
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 2.1e-25 121.3 178 45.5
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 2.3e-24 117.9 69 82.6
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 3.0e-24 117.5 69 82.6
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.2e-19 101.3 120 53.3
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 8.4e-19 99.4 66 77.3
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 4.6e-17 93.6 60 73.3
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.0e-16 90.9 59 72.9
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 4.3e-15 87.0 57 71.9
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 9.6e-15 85.9 69 65.2
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-14 85.5 68 58.8
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.0e-13 80.5 65 56.9
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 9.9e-12 75.9 36 97.2
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 3.5e-09 67.4 74 52.7
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 1.1e-07 62.4 94 40.4
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 7.4e-07 59.7 54 64.8
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.8e-06 57.8 36 77.8


User provided reference genes

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