Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 2182.9 1153 100.0
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1969.5 1149 90.8
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1788.9 1155 82.3
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1761.1 1163 81.9
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1620.9 1173 73.3
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1583.5 1152 73.9
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1553.9 1155 72.8
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1553.1 1151 70.5
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1538.9 1157 71.2
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1538.5 1172 70.1
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1538.1 1156 72.8
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1536.5 1151 72.7
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1535.8 1155 73.0
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1535.8 1156 70.4
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1532.3 1152 70.5
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1529.6 1157 72.8
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1529.2 1155 72.7
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1528.8 1157 71.0
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1527.7 1155 70.7
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1524.6 1155 72.1
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1520.4 1176 70.6
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1519.2 1166 71.9
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1513.8 1152 71.2
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1513.4 1187 70.7
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1508.8 1162 71.3
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1506.9 1162 71.3
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1501.1 1140 72.1
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1498.0 1162 70.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1495.7 1154 72.2
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1493.4 1161 70.5
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1486.5 1151 69.8
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1484.2 1155 70.8
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1482.6 1162 68.5
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1480.7 1148 68.7
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1480.3 1161 71.1
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1480.3 1161 71.1
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1478.8 1153 68.9
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1477.6 1162 70.6
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1476.5 1155 68.4
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1475.3 1153 70.4
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1474.9 1155 70.2
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1472.6 1155 68.1
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1468.4 1156 69.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1467.6 1152 70.9
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1467.6 1152 70.1
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1467.2 1146 69.2
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1464.9 1182 67.1
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1461.8 1160 69.9
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1458.7 1183 69.4
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1458.7 1169 66.9
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1458.4 1156 70.3
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1458.4 1180 66.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1458.0 1187 66.7
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1456.0 1154 70.1
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1454.5 1152 69.7
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1451.0 1153 67.0
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1447.2 1150 70.3
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1444.9 1187 66.7
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1437.9 1156 66.7
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1437.6 1154 69.2
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1435.2 1166 69.3
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1431.0 1158 68.5
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1114 69.7
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1421.8 1161 68.2
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1421.0 1152 69.4
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1414.4 1159 65.9
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1399.4 1152 67.5
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1399.0 1154 67.7
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1396.7 1216 64.5
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1394.4 1152 67.8
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1394.4 1181 66.2
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1390.9 1152 67.4
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1384.8 1152 67.2
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1383.6 1176 66.1
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1382.9 1153 67.4
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1382.5 1176 66.1
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1381.7 1178 66.0
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1381.3 1178 66.0
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1380.5 1178 65.6
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1377.8 1178 65.8
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1377.8 1181 65.9
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1374.0 1155 64.7
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1369.0 1149 64.9
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1354.3 1154 66.2
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1324.7 1180 63.6
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1317.4 890 78.2
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1305.0 1211 62.2
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1272.7 935 74.8
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1208.4 1037 66.5
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1122.5 1225 54.0
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1095.5 1235 53.7
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1092.8 1244 51.2
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1076.2 918 65.0
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.1e-298 1030.4 735 71.0
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 9.2e-295 1017.3 1164 53.3
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.1e-270 936.4 742 67.8
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 6.1e-254 881.7 1387 41.5
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 2.9e-248 862.8 589 76.1
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 6.5e-248 861.7 590 79.7
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.6e-225 787.3 519 78.2
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 2.2e-224 783.5 519 78.0
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.8e-219 765.8 519 77.1
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 3.3e-215 753.1 623 64.5
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 3.7e-211 739.6 615 65.5
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.1e-193 680.6 612 62.7
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 6.0e-177 625.9 565 60.7
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.1e-173 615.1 566 62.2
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.5e-172 611.3 1191 36.3
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.3e-171 608.2 546 62.3
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.8e-165 587.8 463 71.1
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 8.4e-147 525.8 544 55.0
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 2.2e-142 511.1 393 67.7
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 4.8e-126 456.8 332 72.9
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.5e-123 446.4 322 73.9
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 6.8e-112 409.8 496 51.4
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 5.7e-111 406.8 777 34.6
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.5e-108 397.1 540 45.2
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.8e-97 361.3 361 56.0
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.1e-93 347.4 376 53.2
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.9e-92 343.6 379 52.8
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.8e-88 332.0 1200 27.6
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.2e-84 319.3 441 50.1
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 5.6e-82 310.5 214 76.6
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.2e-79 302.8 221 72.9
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.4e-77 295.8 255 55.7
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.2e-76 292.7 198 75.8
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 4.6e-76 290.8 255 63.9
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 9.9e-71 273.1 248 62.9
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 9.6e-66 256.5 149 88.6
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.6e-65 254.6 147 87.1
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.2e-63 249.6 172 73.3
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.6e-60 239.2 374 42.0
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.5e-58 231.9 374 41.2
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 2.8e-57 228.4 374 40.9
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 6.2e-57 227.3 374 40.4
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.7e-51 206.8 106 98.1
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 2.8e-49 201.8 113 89.4
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 4.0e-48 198.0 110 90.0
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-47 196.1 113 87.6
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 2.9e-46 191.8 113 85.8
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 2.9e-46 191.8 113 85.8
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 5.1e-43 181.0 109 85.3
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.1e-43 181.0 592 30.1
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 9.6e-42 176.8 106 86.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.8e-40 172.6 269 46.5
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 9.0e-40 170.2 99 86.9
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.3e-38 166.4 166 59.0
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.4e-37 162.9 97 82.5
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.1e-32 146.7 82 90.2
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.5e-31 142.9 120 62.5
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 2.1e-28 132.5 171 50.3
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.9e-26 125.9 182 41.2
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 6.3e-25 120.9 72 86.1
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 7.7e-23 114.0 75 77.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 2.2e-22 112.5 75 76.0
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 6.5e-22 110.9 73 74.0
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.7e-20 105.5 91 64.8
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 5.1e-19 101.3 71 70.4
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 2.9e-06 58.9 69 50.7


User provided reference genes

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