Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 0.0e+00 1496.1 751 100.0
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 3.5e-303 1044.6 801 70.9
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 5.8e-282 974.2 807 65.6
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.3e-276 956.4 807 64.7
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 9.1e-243 844.0 783 57.2
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 5.0e-241 838.2 787 58.8
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 8.5e-241 837.4 766 58.0
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.1e-240 837.0 797 56.6
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 3.6e-239 832.0 796 57.0
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 8.0e-239 830.9 795 56.7
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 8.3e-236 820.8 789 56.7
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 2.4e-235 819.3 782 57.3
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 3.1e-235 818.9 799 55.4
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 7.0e-235 817.8 784 57.3
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 5.9e-234 814.7 796 55.8
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.0e-233 813.9 793 56.4
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.8e-230 803.1 798 55.9
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 2.3e-230 802.7 794 56.0
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 4.0e-230 802.0 770 56.1
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 6.8e-230 801.2 795 54.3
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 1.5e-229 800.0 793 55.7
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 2.0e-229 799.7 747 58.4
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 4.4e-229 798.5 796 55.8
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 8.3e-228 794.3 796 55.5
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 4.5e-226 788.5 782 55.9
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 3.6e-223 778.9 785 54.0
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 8.0e-223 777.7 801 55.7
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 5.2e-222 775.0 784 53.7
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 6.8e-222 774.6 793 53.7
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.2e-221 773.9 801 55.4
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.2e-221 773.9 773 54.2
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 2.0e-221 773.1 784 54.2
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 4.4e-221 771.9 708 57.6
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 1.7e-220 770.0 784 53.7
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 2.2e-220 769.6 775 54.5
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 6.4e-220 768.1 783 54.2
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 8.3e-220 767.7 797 53.5
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 2.0e-218 763.1 776 54.9
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 7.8e-218 761.1 748 56.1
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 5.0e-217 758.4 776 54.6
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 6.6e-217 758.1 773 54.6
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 6.6e-217 758.1 786 53.4
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 8.6e-217 757.7 795 53.5
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 1.1e-216 757.3 775 54.3
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 3.3e-216 755.7 748 55.6
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 9.5e-216 754.2 804 53.5
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.4e-214 750.4 759 53.1
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.4e-214 750.4 744 55.0
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 5.8e-213 745.0 796 53.5
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 3.7e-212 742.3 784 52.8
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 4.9e-212 741.9 770 53.4
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.4e-211 739.6 802 53.5
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 3.2e-211 739.2 776 51.9
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 3.2e-211 739.2 796 53.5
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 5.4e-211 738.4 785 52.5
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.2e-210 737.3 759 55.2
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 3.5e-210 735.7 791 51.7
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.3e-209 733.8 736 56.0
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 2.3e-209 733.0 771 54.1
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 2.3e-209 733.0 766 53.8
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.5e-208 730.3 825 51.3
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 3.1e-206 722.6 796 52.1
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 3.4e-205 719.2 803 51.7
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 5.4e-203 711.8 793 52.3
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 7.1e-203 711.4 562 64.2
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 4.3e-200 702.2 793 51.1
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 5.2e-198 695.3 723 53.5
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 2.0e-197 693.3 758 51.1
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.2e-195 686.0 759 51.1
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 1.0e-193 681.0 565 61.4
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.5e-192 677.2 554 62.5
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 2.4e-187 659.8 513 65.1
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 1.2e-186 657.5 650 54.2
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 3.5e-186 656.0 517 66.0
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 2.1e-183 646.7 785 48.7
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.8e-181 638.6 785 47.1
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.4e-179 633.3 781 48.1
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 3.0e-177 626.3 811 45.7
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 1.9e-176 623.6 464 67.9
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 5.6e-176 622.1 556 58.1
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.4e-171 607.4 778 45.5
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.9e-168 597.0 783 46.0
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 4.8e-167 592.4 650 53.4
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 5.7e-160 568.9 788 44.4
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 8.2e-159 565.1 762 44.1
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 2.1e-154 550.4 805 41.1
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 2.0e-144 517.3 810 39.8
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 1.8e-137 494.2 406 62.8
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 1.2e-133 481.5 846 39.8
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 1.0e-132 478.4 573 49.4
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.8e-129 467.6 361 66.5
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 6.8e-129 465.7 361 66.2
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.4e-126 458.0 780 37.2
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 2.2e-124 450.7 576 47.7
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.5e-123 448.0 337 65.0
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.5e-123 448.0 337 65.0
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.8e-121 438.7 337 63.8
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 1.0e-116 425.2 429 52.0
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 1.4e-105 388.3 312 65.4
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 5.8e-104 382.9 364 54.9
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 3.5e-101 373.6 392 54.6
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 3.1e-97 360.5 867 33.1
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 2.0e-96 357.8 815 32.4
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 5.4e-94 349.7 746 33.6
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 4.4e-80 303.5 339 51.6
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 8.4e-79 299.3 254 59.8
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.0e-76 292.4 320 51.2
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 5.4e-70 270.0 801 28.8
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.5e-69 267.3 194 68.0
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 1.9e-67 261.5 192 66.1
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 6.0e-61 240.0 303 46.2
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.8e-57 228.4 206 60.2
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.1e-53 214.9 387 38.5
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 9.6e-51 206.1 328 40.5
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 5.3e-49 200.3 239 46.4
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.2e-45 189.1 168 59.5
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 2.7e-45 188.0 716 26.3
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 2.3e-44 184.9 186 52.2
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 6.9e-41 173.3 197 48.7
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 3.3e-35 154.5 199 45.7
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 7.4e-35 153.3 279 39.8
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-30 139.4 135 55.6
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 7.7e-24 116.7 150 44.0
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 1.7e-23 115.5 159 47.2
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 2.2e-23 115.2 163 46.6
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 9.4e-22 109.8 156 41.7
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 8.0e-21 106.7 128 45.3
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.0e-21 106.7 175 40.6
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 2.0e-11 75.5 51 66.7
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 5.7e-11 73.9 48 66.7
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.3e-10 72.8 51 64.7
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 6.3e-10 70.5 68 57.4
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 1.3e-07 62.8 158 30.4


User provided reference genes

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