Gene: AT3G04820

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G04820
  • Transcript Identifier AT3G04820.1
  • Gene Type Coding gene
  • Location Chr3 : 1321453-1325949 : negative

Gene Family Information

  • ID HOM05D005810
  • #Genes/#Species 134/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G04820.1
  • uniprot Q5XVC2

Descriptions

  • Description Pseudouridine synthase family protein
  • Computational description Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
GOA Databasepseudouridine synthesis
GO:0001522
IBA
Gene Ontologypseudouridine synthesis1
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
GOA DatabaseRNA modification
GO:0009451
IEA
InterProRNA modification

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0009982
IEA
GOA Databasepseudouridine synthase activity
GO:0009982
IBA
TAS
Gene Ontologypseudouridine synthase activity1 2
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0016853
IEA
GOA Databaseisomerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005634
IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042214 Pseudouridine synthase, TruD, catalytic domain
IPR001656 Pseudouridine synthase, TruD
IPR020103 Pseudouridine synthase, catalytic domain superfamily
Mapman id Description
16.5.3.3 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruD)