Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 9.3e-113 410.2 208 100.0
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 1.1e-84 317.0 211 77.3
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 4.4e-78 295.0 211 69.2
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 6.3e-77 291.2 210 71.0
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 5.3e-76 288.1 210 71.0
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.0e-74 283.9 209 68.4
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.0e-74 283.9 206 69.9
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 9.4e-73 277.3 207 67.1
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 2.1e-72 276.2 208 64.9
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 4.7e-72 275.0 207 67.1
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.3e-71 272.7 207 66.7
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 3.4e-70 268.9 207 64.7
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 4.4e-70 268.5 209 63.6
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 5.7e-70 268.1 208 65.4
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.8e-69 265.8 208 65.4
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 4.8e-69 265.0 207 62.3
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 6.3e-69 264.6 209 63.6
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 8.3e-69 264.2 207 62.3
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 8.3e-69 264.2 207 63.3
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 8.3e-69 264.2 207 66.7
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 1.4e-68 263.5 207 66.7
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 1.8e-68 263.1 208 65.4
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.8e-68 263.1 207 66.7
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 4.1e-68 261.9 207 62.8
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 5.4e-68 261.5 208 64.4
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 5.4e-68 261.5 206 63.1
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 7.0e-68 261.2 205 64.4
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 7.0e-68 261.2 210 64.3
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 9.1e-68 260.8 208 63.5
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 9.1e-68 260.8 207 61.8
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.2e-67 260.4 207 65.7
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 2.7e-67 259.2 208 64.9
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.7e-67 259.2 208 63.5
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 4.5e-67 258.5 207 61.4
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 4.5e-67 258.5 207 61.4
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.0e-66 257.3 207 62.3
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.0e-66 257.3 190 65.3
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.7e-66 256.5 208 63.0
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 2.3e-66 256.1 207 62.8
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 2.3e-66 256.1 209 62.2
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 5.0e-66 255.0 209 61.7
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 5.0e-66 255.0 184 66.8
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 1.1e-65 253.8 207 62.3
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 1.9e-65 253.1 207 57.0
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 3.3e-65 252.3 207 59.9
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 3.3e-65 252.3 183 66.1
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 7.2e-65 251.1 181 65.2
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 9.5e-65 250.8 211 63.5
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 9.5e-65 250.8 207 58.5
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.2e-64 250.4 209 61.2
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 2.1e-64 249.6 207 59.9
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 2.8e-64 249.2 207 57.5
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 3.6e-64 248.8 244 54.5
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 6.1e-64 248.1 207 60.4
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 6.1e-64 248.1 207 60.4
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 8.0e-64 247.7 187 63.1
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 8.0e-64 247.7 207 57.0
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.0e-63 247.3 188 64.9
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.0e-63 247.3 207 58.5
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.0e-63 247.3 202 56.9
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 1.8e-63 246.5 182 62.1
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 4.0e-63 245.4 207 59.4
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 5.2e-63 245.0 208 59.1
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 6.8e-63 244.6 209 58.9
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 8.9e-63 244.2 207 59.4
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 8.9e-63 244.2 212 58.0
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 1.2e-62 243.8 207 56.5
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 2.6e-62 242.7 187 58.8
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 4.4e-62 241.9 207 56.0
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 4.4e-62 241.9 207 55.6
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 4.4e-62 241.9 208 56.2
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 5.7e-62 241.5 211 58.3
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 5.7e-62 241.5 207 58.5
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 7.5e-62 241.1 194 60.8
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 7.5e-62 241.1 183 63.9
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 7.5e-62 241.1 207 56.0
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.5e-62 241.1 207 57.0
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 1.7e-61 240.0 207 56.5
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 2.2e-61 239.6 207 56.5
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 2.2e-61 239.6 208 58.2
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 2.8e-61 239.2 211 56.9
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 4.9e-61 238.4 207 56.0
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 4.9e-61 238.4 181 63.5
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 6.3e-61 238.0 206 59.7
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 1.1e-60 237.3 210 55.2
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 1.4e-60 236.9 207 55.1
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 2.4e-60 236.1 207 55.6
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 2.4e-60 236.1 207 56.5
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 3.1e-60 235.7 207 55.6
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 3.5e-59 232.3 207 55.6
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 5.9e-59 231.5 207 54.6
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 5.0e-58 228.4 207 53.6
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 5.0e-58 228.4 207 54.1
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 2.5e-57 226.1 207 53.1
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 3.3e-57 225.7 226 52.7
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.2e-56 223.8 211 59.2
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 1.0e-55 220.7 161 62.7
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 2.3e-55 219.5 217 50.7
Nitab4.5_0000638g0270 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.1e-55 219.2 205 56.6
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 8.9e-55 217.6 204 55.9
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 8.9e-55 217.6 186 57.0
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 3.4e-54 215.7 273 45.8
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.7e-53 212.2 208 56.7
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 4.9e-53 211.8 169 57.4
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 6.4e-53 211.5 207 54.6
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 2.4e-52 209.5 207 51.7
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 2.0e-51 206.5 214 50.5
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 6.0e-51 204.9 207 51.7
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 1.7e-50 203.4 212 53.3
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 5.0e-50 201.8 207 49.8
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 3.6e-48 195.7 198 49.5
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 4.7e-48 195.3 144 64.6
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 6.2e-48 194.9 143 65.7
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 4.4e-46 188.7 164 57.3
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.4e-46 188.7 182 51.6
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.4e-46 188.7 182 51.6
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 6.4e-45 184.9 205 51.2
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 1.0e-42 177.6 207 47.3
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 2.3e-42 176.4 207 48.3
PGSC0003DMG400018342 Solanum tuberosum HOM05D003674 ORTHO05D004226 5.1e-42 175.3 134 59.7
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 9.5e-41 171.0 200 47.0
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 1.1e-39 167.5 180 51.7
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.2e-39 165.2 186 46.2
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.9e-39 164.5 209 42.1
Hma1.2p1_1836F.1_g304700 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 5.8e-38 161.8 131 64.9
arahy.Tifrunner.gnm1.ann1.Y3H9JV Arachis hypogaea HOM05D003674 ORTHO05D004226 1.9e-36 156.8 107 61.7
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 9.2e-36 154.5 133 55.6
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 3.5e-35 152.5 107 67.3
Oeu010989.1 Olea europaea HOM05D003674 ORTHO05D004226 4.6e-35 152.1 154 56.5
Peaxi162Scf00132g00118 Petunia axillaris HOM05D003674 ORTHO05D004226 2.5e-33 146.4 113 59.3
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 1.1e-31 141.0 141 51.1
Haze_13163 Corylus avellana HOM05D003674 ORTHO05D004226 1.4e-23 114.0 96 61.5
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 3.2e-20 102.8 77 62.3
arahy.Tifrunner.gnm1.ann1.WCYV83 Arachis hypogaea HOM05D003674 ORTHO05D004226 3.5e-19 99.4 65 61.5
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 9.6e-17 91.3 75 56.0
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 9.6e-17 91.3 93 50.5
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 4.5e-14 82.4 75 52.0
MSTRG.14333 Avicennia marina HOM05D003674 ORTHO05D004226 3.5e-11 72.8 53 64.2
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.7e-10 68.6 175 29.1
Lj4g0017968 Lotus japonicus HOM05D003674 ORTHO05D004226 4.3e-09 65.9 47 61.7
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.6e-08 63.9 172 26.7
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.6e-08 63.9 172 27.3
Hma1.2p1_1836F.1_g304710 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.7e-08 62.8 46 69.6
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 8.1e-08 61.6 45 66.7
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.1e-07 61.2 169 26.0
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 1.4e-07 60.8 151 30.5
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.3e-07 58.9 168 26.8
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.0e-06 57.0 171 26.9
Lsat_1_v5_gn_6_33321 Lactuca sativa HOM05D000067 ORTHO05D000280 2.6e-06 56.6 52 53.8


User provided reference genes

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