Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 0.0e+00 2131.7 1099 100.0
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 0.0e+00 1643.6 1106 80.3
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 0.0e+00 1574.3 1104 76.8
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 0.0e+00 1546.2 1104 75.5
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 0.0e+00 1544.6 1104 75.3
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 0.0e+00 1497.6 1101 72.7
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 0.0e+00 1476.5 1105 71.8
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 0.0e+00 1472.6 1106 72.0
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 0.0e+00 1447.2 1103 70.6
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 0.0e+00 1438.3 1104 70.0
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 0.0e+00 1425.2 1104 69.5
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 0.0e+00 1421.8 1104 69.6
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 0.0e+00 1421.0 1109 68.5
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 0.0e+00 1415.2 1104 68.8
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 0.0e+00 1414.1 1104 68.7
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 0.0e+00 1412.5 1108 69.0
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 0.0e+00 1411.7 1103 69.3
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 0.0e+00 1409.4 1102 69.1
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 0.0e+00 1402.1 1104 68.1
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 0.0e+00 1401.7 1106 69.0
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 0.0e+00 1401.7 1102 68.3
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 0.0e+00 1401.3 1115 68.3
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 0.0e+00 1401.0 1103 68.8
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 0.0e+00 1395.9 1103 68.4
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 0.0e+00 1395.2 1103 68.4
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 0.0e+00 1394.8 1106 67.8
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 0.0e+00 1393.6 1102 68.5
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 0.0e+00 1393.3 1102 68.6
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 0.0e+00 1393.3 1098 68.2
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 0.0e+00 1390.9 1099 68.2
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 0.0e+00 1390.2 1099 68.3
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 0.0e+00 1385.5 1102 68.1
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 0.0e+00 1385.2 1103 68.6
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 0.0e+00 1381.7 1107 67.2
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 0.0e+00 1380.5 1102 67.9
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 0.0e+00 1379.0 1112 67.0
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 0.0e+00 1372.5 1104 67.2
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 0.0e+00 1370.9 1103 67.8
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 0.0e+00 1370.5 1102 67.3
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 0.0e+00 1367.4 1103 66.7
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 0.0e+00 1362.1 1103 66.5
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 0.0e+00 1360.1 1103 66.5
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 0.0e+00 1358.6 1108 66.1
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 0.0e+00 1355.9 1103 66.8
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 0.0e+00 1354.3 1099 65.5
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 0.0e+00 1350.5 1102 65.8
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 0.0e+00 1350.5 1106 65.9
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 0.0e+00 1339.3 1020 71.1
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 0.0e+00 1338.9 1101 65.9
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 0.0e+00 1335.5 1110 64.5
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 0.0e+00 1332.4 1104 65.9
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 0.0e+00 1332.4 1104 65.8
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 0.0e+00 1331.2 1106 64.8
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 0.0e+00 1331.2 1125 63.8
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 0.0e+00 1330.1 1102 65.2
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 0.0e+00 1329.7 1107 65.2
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 0.0e+00 1325.8 1103 65.2
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 0.0e+00 1323.9 1102 65.0
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 0.0e+00 1320.8 1103 64.7
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 0.0e+00 1318.5 1106 65.5
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 0.0e+00 1310.0 1095 65.1
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 0.0e+00 1305.4 1106 65.3
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 0.0e+00 1304.3 1106 64.2
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 0.0e+00 1299.3 1105 64.0
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 0.0e+00 1296.6 1105 64.2
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 0.0e+00 1294.6 1108 64.1
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 0.0e+00 1293.1 1108 64.0
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 0.0e+00 1289.2 1105 63.9
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 0.0e+00 1286.9 1081 64.7
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 0.0e+00 1284.2 1106 64.4
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 0.0e+00 1280.0 1106 63.7
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 0.0e+00 1277.7 1100 62.9
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 0.0e+00 1275.4 1100 63.0
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 0.0e+00 1272.3 1105 64.3
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 0.0e+00 1268.4 1107 62.2
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 0.0e+00 1267.7 1109 61.9
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 0.0e+00 1267.3 1107 62.0
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 0.0e+00 1265.0 1108 62.0
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 0.0e+00 1263.8 1106 62.1
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 0.0e+00 1258.4 1107 61.9
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 0.0e+00 1258.0 1105 61.8
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 0.0e+00 1256.9 1097 61.7
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 0.0e+00 1255.7 1111 63.2
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 0.0e+00 1255.0 1107 61.7
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 0.0e+00 1253.8 1101 62.4
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 0.0e+00 1252.7 1109 61.3
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 0.0e+00 1251.9 1108 61.4
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 0.0e+00 1251.1 1107 61.7
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 0.0e+00 1250.0 1105 61.6
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 0.0e+00 1246.9 1112 61.0
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 0.0e+00 1246.1 1107 61.5
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 0.0e+00 1244.6 1098 61.8
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 0.0e+00 1241.1 1109 61.1
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 0.0e+00 1234.9 1098 61.7
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 0.0e+00 1233.4 1105 61.4
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 0.0e+00 1224.5 1122 59.6
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 0.0e+00 1220.3 1100 60.5
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 0.0e+00 1211.8 1110 60.8
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 0.0e+00 1203.0 1100 59.9
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 0.0e+00 1186.0 1004 63.5
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 0.0e+00 1185.6 1104 58.9
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 0.0e+00 1182.5 1106 59.5
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 0.0e+00 1146.3 1104 58.2
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 0.0e+00 1142.5 1093 57.4
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 0.0e+00 1133.6 1106 57.4
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 0.0e+00 1111.3 1106 57.9
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 0.0e+00 1109.0 1102 56.2
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 0.0e+00 1104.0 1100 56.2
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 0.0e+00 1084.3 959 62.4
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 2.6e-307 1058.9 1108 54.8
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 5.5e-305 1051.2 1098 53.2
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 1.7e-298 1029.6 1091 53.6
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.5e-297 1026.5 1094 53.8
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 8.8e-295 1017.3 829 67.6
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 2.9e-282 975.7 826 65.1
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 1.4e-276 956.8 981 56.6
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.5e-273 946.0 875 60.5
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 1.9e-257 893.3 670 70.6
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 1.5e-254 883.6 814 60.8
CAN.G358.86 Capsicum annuum HOM05D004035 ORTHO05D004631 7.4e-225 785.0 785 58.0
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 3.3e-217 759.6 846 52.6
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 4.3e-209 732.6 1121 39.7
Oeu042264.1 Olea europaea HOM05D004035 ORTHO05D004631 1.5e-206 724.2 558 70.6
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 1.1e-204 718.0 813 53.1
CsaV3_4G004990 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.7e-203 713.4 603 66.3
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 2.1e-195 687.2 1122 38.9
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 4.2e-188 662.9 595 62.5
RcHm_v2.0_Chr2g0101111 Rosa chinensis HOM05D004035 ORTHO05D004631 2.6e-177 627.1 469 69.7
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 8.3e-176 622.1 591 59.6
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 3.1e-167 593.6 1115 35.4
Thecc.01G035900 Theobroma cacao HOM05D004035 ORTHO05D004631 4.5e-166 589.7 420 72.4
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 3.4e-161 573.5 692 50.6
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 5.0e-157 559.7 548 57.8
Cpa.g.sc1294.1 Carica papaya HOM05D004035 ORTHO05D004631 1.2e-145 521.9 413 68.3
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 7.8e-134 482.6 490 58.4
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 3.1e-130 470.7 401 65.3
BolC3t20257H Brassica oleracea HOM05D004035 ORTHO05D004631 1.9e-127 461.5 490 55.3
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 3.4e-113 414.1 690 40.1
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 9.9e-113 412.5 926 36.0
PGSC0003DMG400027646 Solanum tuberosum HOM05D004035 ORTHO05D004631 8.4e-104 382.9 287 70.0
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 3.0e-101 374.4 327 59.6
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 1.8e-98 365.2 224 79.0
HPP92_004247 Vanilla planifolia HOM05D004035 ORTHO05D004631 1.3e-96 359.0 408 51.2
BraA08t34187Z Brassica rapa HOM05D004035 ORTHO05D004631 7.2e-95 353.2 284 63.4
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 1.1e-92 345.9 304 61.5
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 1.1e-92 345.9 218 76.6
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 3.3e-84 317.8 1628 24.2
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 5.5e-79 300.4 218 67.4
TPR.G13573 Trifolium pratense HOM05D004035 ORTHO05D004631 1.6e-78 298.9 316 57.6
SHI32099 Sapria himalayana HOM05D004035 ORTHO05D004631 3.6e-78 297.7 363 50.1
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 4.0e-69 267.7 231 55.4
Lalb_Chr16g0388271 Lupinus albus HOM05D004035 ORTHO05D004631 5.2e-53 214.2 147 72.1
CsaV3_4G004980 Cucumis sativus L. HOM05D004035 ORTHO05D004631 7.0e-50 203.8 174 63.2
HPP92_004246 Vanilla planifolia HOM05D004035 ORTHO05D004631 4.9e-43 181.0 196 53.1
Oeu009413.1 Olea europaea HOM05D004035 ORTHO05D004631 6.2e-38 164.1 658 29.3
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 3.1e-37 161.8 1128 23.0
TPR.G13585 Trifolium pratense HOM05D004035 ORTHO05D004631 8.1e-30 137.1 105 71.4
Lsat_1_v5_gn_8_105180 Lactuca sativa HOM05D004035 ORTHO05D004631 4.4e-28 131.3 207 49.3
TPR.G13595 Trifolium pratense HOM05D004035 ORTHO05D004631 9.8e-28 130.2 163 51.5
SHI32100 Sapria himalayana HOM05D004035 ORTHO05D000001 1.0e-24 120.2 94 62.8
Cfa020838 Carpinus fangiana HOM05D004035 ORTHO05D004631 2.3e-24 119.0 102 62.7
TPR.G13579 Trifolium pratense HOM05D004035 ORTHO05D004631 2.5e-23 115.5 88 64.8
C03p80040 Brassica napus HOM05D004035 ORTHO05D004631 1.8e-21 109.4 101 60.4
BolC3t20258H Brassica oleracea HOM05D004035 ORTHO05D004631 1.8e-21 109.4 101 60.4
ATR0800G151 Amborella trichopoda HOM05D004035 ORTHO05D004631 8.9e-21 107.1 227 33.5
Duzib264G0986 Durio zibethinus HOM05D004035 ORTHO05D004631 1.3e-19 103.2 317 30.6
Cfa025411 Carpinus fangiana HOM05D004035 ORTHO05D004631 4.1e-18 98.2 984 20.2
TPR.G13568 Trifolium pratense HOM05D004035 ORTHO05D004631 6.6e-16 90.9 97 53.6
Cre06.g278124 Chlamydomonas reinhardtii HOM05D004035 ORTHO05D004631 1.4e-13 83.2 107 40.2
Cfa008017 Carpinus fangiana HOM05D004035 ORTHO05D004631 1.3e-11 76.6 52 69.2
Medtr8g072800 Medicago truncatula HOM05D004035 ORTHO05D004631 1.7e-08 66.2 59 54.2
Os04g0389901 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 2.8e-06 58.9 47 55.3
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 3.6e-06 58.5 135 25.9
SEGI_33229 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 4.8e-06 58.2 118 28.8


User provided reference genes

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