Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 4.5e-233 810.8 398 100.0
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 2.7e-124 449.5 301 76.1
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 2.8e-113 412.9 301 69.1
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 3.4e-111 406.0 301 69.1
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 2.0e-108 396.7 301 67.4
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 2.7e-108 396.4 301 67.1
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 7.8e-108 394.8 301 65.1
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.5e-106 390.6 301 66.1
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 2.8e-105 386.3 300 64.7
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 6.1e-105 385.2 301 62.5
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 2.3e-104 383.3 301 64.8
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 2.6e-103 379.8 301 63.1
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 4.4e-103 379.0 301 61.5
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 9.8e-103 377.9 308 60.7
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 4.9e-102 375.6 301 59.8
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 4.1e-101 372.5 303 61.7
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 7.0e-101 371.7 301 58.8
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 7.0e-101 371.7 301 58.8
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 7.0e-101 371.7 301 59.8
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 1.7e-99 367.1 301 61.5
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 2.3e-99 366.7 301 61.5
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 8.6e-99 364.8 301 61.1
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 8.6e-99 364.8 299 61.2
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 1.5e-98 364.0 299 59.5
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 4.3e-98 362.5 299 59.5
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 4.3e-98 362.5 299 59.2
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 2.8e-97 359.8 299 61.2
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 2.8e-97 359.8 301 61.1
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 1.4e-96 357.5 300 59.7
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 3.1e-96 356.3 299 60.2
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 5.2e-96 355.5 301 61.5
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 6.8e-96 355.1 299 59.5
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 8.9e-96 354.8 298 59.1
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 8.9e-96 354.8 301 59.1
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 1.2e-95 354.4 299 57.5
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 1.5e-95 354.0 301 58.5
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 2.0e-95 353.6 301 60.8
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 2.0e-95 353.6 309 57.9
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 5.8e-95 352.1 301 59.8
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 4.9e-94 349.0 301 57.8
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 3.2e-93 346.3 299 56.9
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 5.4e-93 345.5 300 55.7
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 7.1e-93 345.1 299 56.5
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 7.1e-93 345.1 300 57.3
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 7.1e-93 345.1 301 59.8
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 7.1e-93 345.1 343 51.0
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 9.2e-93 344.7 302 59.3
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 1.6e-92 344.0 299 57.2
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 1.6e-92 344.0 301 56.8
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 3.5e-92 342.8 301 56.5
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 4.6e-92 342.4 301 56.5
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 7.8e-92 341.7 311 55.0
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 7.8e-92 341.7 274 60.9
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 1.0e-91 341.3 301 56.1
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 1.3e-91 340.9 301 55.8
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 1.3e-91 340.9 299 55.9
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 1.7e-91 340.5 301 55.8
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 2.3e-91 340.1 299 56.5
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 3.0e-91 339.7 301 55.5
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 3.0e-91 339.7 301 55.1
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 5.1e-91 339.0 301 55.8
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 6.6e-91 338.6 301 55.5
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 8.6e-91 338.2 301 55.5
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 1.1e-90 337.8 299 57.2
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 1.9e-90 337.0 299 55.9
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 1.9e-90 337.0 299 56.2
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 1.6e-89 334.0 301 54.8
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 2.1e-89 333.6 299 56.9
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 3.6e-89 332.8 306 56.9
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 4.7e-89 332.4 283 58.7
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 6.2e-89 332.0 299 56.9
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.4e-88 330.9 299 54.2
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 5.2e-88 328.9 299 57.2
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 1.2e-87 327.8 302 55.6
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.5e-87 327.4 294 55.4
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 2.6e-87 326.6 305 55.7
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 7.6e-87 325.1 301 53.2
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 1.4e-85 320.9 301 57.5
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 2.4e-85 320.1 304 53.3
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 7.1e-85 318.5 284 56.3
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 7.8e-84 315.1 283 56.5
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 2.3e-83 313.5 303 52.8
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 5.1e-83 312.4 322 52.2
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 9.6e-82 308.1 301 53.2
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.6e-81 307.4 278 54.0
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 4.0e-80 302.8 302 51.0
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 7.6e-79 298.5 279 51.6
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 8.4e-78 295.0 233 62.7
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.2e-76 291.2 300 49.0
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 1.6e-76 290.8 300 48.3
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 1.7e-75 287.3 402 42.3
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 2.5e-74 283.5 258 54.3
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 1.3e-73 281.2 301 46.8
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 1.6e-73 280.8 299 46.8
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 4.0e-72 276.2 340 42.9
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 1.9e-66 257.3 304 43.8
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 8.1e-65 251.9 305 44.6
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 1.6e-57 227.6 281 45.9
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 2.9e-54 216.9 165 59.4
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 1.1e-53 214.9 153 64.1
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 4.2e-53 213.0 322 39.1
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 6.0e-52 209.1 150 68.7
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 5.3e-48 196.1 234 49.1
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.5e-47 194.5 192 53.6
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.3e-43 181.4 207 46.4
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 1.9e-42 177.6 112 68.8
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 5.3e-40 169.5 108 70.4
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 8.5e-30 135.6 98 68.4
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 7.2e-29 132.5 97 67.0
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 3.0e-27 127.1 85 72.9
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 8.5e-22 109.0 62 79.0
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.2e-20 105.1 72 75.0
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 6.1e-20 102.8 83 65.1
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 3.3e-18 97.1 71 67.6
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 1.6e-15 88.2 51 80.4
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 2.9e-14 84.0 70 60.0
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 1.1e-13 82.0 72 55.6
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 5.5e-13 79.7 270 24.8
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 8.8e-11 72.4 119 29.4
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 1.2e-10 72.0 260 22.3
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 1.5e-10 71.6 110 31.8
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 2.6e-10 70.9 110 30.9
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 7.5e-10 69.3 108 30.6
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 9.8e-10 68.9 121 28.1
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 9.8e-10 68.9 107 30.8
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 9.8e-10 68.9 116 29.3
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.3e-09 68.6 107 30.8
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 2.2e-09 67.8 107 30.8
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 2.2e-09 67.8 110 29.1
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 3.7e-09 67.0 115 34.8
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 3.7e-09 67.0 107 29.9
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 3.7e-09 67.0 45 66.7
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 4.8e-09 66.6 116 29.3
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 6.3e-09 66.2 107 29.9
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 1.4e-08 65.1 107 29.9
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.8e-08 64.7 258 21.7
CDE02G0295 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 5.4e-08 63.2 124 30.6
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 9.1e-08 62.4 117 27.4
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 9.1e-08 62.4 107 29.0
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.2e-07 62.0 117 27.4
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 2.0e-07 61.2 113 27.4
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 3.5e-07 60.5 132 22.7
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.0e-06 58.9 117 24.8


User provided reference genes

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