Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 0.0e+00 1777.3 897 100.0
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 0.0e+00 1336.6 897 77.5
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.1e-222 776.5 1060 47.4
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.1e-222 776.5 1052 47.7
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.7e-219 766.9 1009 49.5
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.0e-172 610.5 1002 42.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.0e-160 570.1 923 43.4
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.7e-158 564.3 1105 38.6
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 7.7e-156 555.4 1097 38.2
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.2e-151 541.6 1157 36.0
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 4.9e-150 536.2 1076 37.1
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 4.1e-149 533.1 1161 35.1
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 7.8e-148 528.9 1103 36.4
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 9.5e-146 521.9 1077 36.1
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 8.0e-145 518.8 1056 37.2
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 3.1e-144 516.9 1078 35.3
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.3e-142 511.5 1117 35.6
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.5e-140 503.4 1085 35.1
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 5.0e-139 499.6 1081 35.3
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.5e-135 488.0 1114 34.1
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 3.7e-134 483.4 1077 35.6
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 6.4e-134 482.6 1094 35.3
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.2e-133 480.3 1094 34.0
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.2e-132 478.4 1013 36.3
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.6e-132 478.0 1104 34.3
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.6e-132 476.5 1006 36.1
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.8e-128 464.5 1086 33.8
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.2e-127 461.8 1046 35.9
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 2.6e-127 460.7 1079 34.1
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.6e-124 451.4 1071 34.2
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 3.5e-124 450.3 1089 33.7
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 3.5e-124 450.3 1101 33.5
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.6e-123 446.0 1088 33.5
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 4.3e-122 443.4 1008 34.9
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 4.3e-122 443.4 1099 33.8
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 6.2e-121 439.5 1079 33.4
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 6.8e-120 436.0 525 48.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.2e-118 431.0 1103 33.1
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 6.4e-118 429.5 1042 33.1
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.2e-117 427.2 1187 31.8
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 2.1e-116 424.5 1032 32.7
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.0e-115 420.6 1052 33.3
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 3.9e-115 420.2 1084 33.2
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 5.1e-115 419.9 1060 32.8
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 8.7e-115 419.1 1146 32.1
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.5e-114 418.3 1113 32.4
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 9.6e-114 415.6 1040 33.4
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 3.6e-113 413.7 1043 32.4
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 6.9e-112 409.5 1106 32.5
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 9.0e-112 409.1 1022 33.9
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 5.8e-111 406.4 1089 33.5
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.3e-110 405.2 1081 32.7
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 4.9e-110 403.3 1036 32.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.9e-109 401.4 1160 31.9
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 4.2e-109 400.2 1063 32.9
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.1e-109 399.4 982 32.8
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 9.3e-109 399.1 1018 33.4
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 2.1e-108 397.9 1107 32.0
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 2.1e-108 397.9 1012 32.8
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.5e-106 391.7 973 32.3
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.6e-105 388.3 999 32.8
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.6e-105 388.3 1017 32.4
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.1e-105 387.9 1056 31.1
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 7.1e-101 372.9 1005 32.2
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.5e-100 370.5 793 37.6
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.3e-99 367.9 1007 32.0
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 3.9e-99 367.1 1027 32.9
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.9e-98 364.8 1151 31.0
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 5.6e-98 363.2 1041 32.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 8.1e-97 359.4 976 32.2
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.3e-94 352.1 967 31.9
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.2e-93 347.4 983 31.1
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.1e-90 339.0 1025 31.6
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.3e-89 335.5 893 31.5
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 5.8e-87 326.6 852 33.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 7.2e-85 319.7 970 31.5
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 2.1e-84 318.2 1057 29.2
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 3.0e-83 314.3 955 30.9
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 7.4e-82 309.7 980 31.4
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.6e-81 308.5 972 29.8
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.7e-78 298.5 760 33.9
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.2e-78 298.1 938 30.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 9.4e-77 292.7 878 31.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.4e-75 288.9 677 34.9
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.5e-74 285.4 281 55.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.5e-74 285.4 966 30.0
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.4e-72 278.9 730 33.4
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.4e-72 278.9 730 33.4
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.8e-72 278.5 730 33.4
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.0e-71 275.0 771 31.5
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 2.6e-71 274.6 678 33.9
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 6.7e-67 260.0 748 30.9
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.8e-64 251.9 676 35.1
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.7e-60 238.0 872 30.0
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.0e-58 231.9 739 31.3
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 4.8e-57 227.3 479 34.2
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 6.3e-57 226.9 163 66.3
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 8.2e-57 226.5 1079 25.0
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.8e-56 225.3 923 29.3
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.6e-52 212.2 506 34.6
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 8.8e-51 206.5 907 28.0
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 4.4e-50 204.1 839 28.2
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.3e-49 202.6 678 30.5
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.1e-48 196.4 456 34.6
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 2.0e-47 195.3 253 42.7
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.7e-46 192.2 428 34.1
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 2.6e-42 178.3 427 30.4
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 7.0e-40 170.2 306 36.3
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.6e-38 163.7 159 54.1
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-37 162.9 540 32.0
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.1e-36 158.7 518 31.9
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 2.8e-36 158.3 659 26.4
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 7.5e-34 150.2 133 55.6
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 9.8e-34 149.8 201 43.8
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.3e-33 149.4 142 52.8
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.7e-33 149.1 495 31.7
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 3.2e-32 144.8 166 45.8
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.1e-28 132.1 165 46.7
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 6.2e-28 130.6 499 29.7
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.4e-27 129.4 690 24.1
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.1e-27 128.3 111 55.0
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 6.8e-27 127.1 501 28.9
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 4.4e-26 124.4 670 26.0
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 5.8e-26 124.0 731 27.4
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 9.2e-24 116.7 724 26.0
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 2.7e-23 115.2 694 26.7
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 3.9e-22 111.3 129 46.5
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 1.5e-21 109.4 715 27.3
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.8e-19 102.4 94 50.0
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.5e-18 99.4 490 28.6
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.1e-15 89.0 180 31.1
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.7e-15 88.6 180 31.1
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 4.6e-15 87.8 675 23.4
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.3e-14 86.3 640 24.1
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.7e-14 85.9 163 32.5
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 3.9e-14 84.7 76 50.0
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.1e-13 83.2 63 58.7
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 3.3e-13 81.6 189 33.3
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 9.5e-13 80.1 398 27.6
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 2.3e-11 75.5 212 33.0
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 8.4e-09 67.0 632 23.4
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.2e-07 63.2 645 21.6
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 3.5e-07 61.6 101 40.6
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 6.6e-06 57.4 74 32.4


User provided reference genes

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