Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 4188.6 2237 100.0
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2922.1 2297 71.8
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2524.2 2279 64.7
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2312.7 2303 58.9
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2194.1 2288 57.6
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2172.9 2287 56.4
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2169.0 1774 67.6
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2166.7 2285 57.5
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2135.9 2401 54.3
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2133.6 2282 55.8
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2130.5 2276 56.5
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2109.7 2297 56.0
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2109.3 2304 55.1
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2106.3 2282 55.5
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2105.1 2284 55.9
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2099.7 2283 54.6
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2085.5 2283 56.2
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2083.1 2277 54.9
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2072.7 2310 54.3
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2065.8 2303 54.5
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2064.3 2287 54.6
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2058.9 2302 54.2
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2049.6 2291 53.8
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2048.5 2217 55.7
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2042.3 2281 54.0
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2041.2 2327 54.6
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 2039.6 2297 54.0
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 2029.2 2299 53.8
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 2028.8 1450 75.0
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 2028.1 2259 54.0
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 2023.1 1450 74.8
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2018.8 2347 53.1
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 2003.0 2246 53.4
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1999.9 2278 54.3
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1986.5 2278 53.2
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 1982.6 2286 53.6
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1972.6 2279 52.7
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1968.4 2333 52.3
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1961.4 2249 52.9
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1956.0 2290 52.3
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1948.3 2261 52.4
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1940.2 2316 50.9
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1939.9 2286 51.6
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1930.6 2298 52.9
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1922.5 2290 51.4
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1921.4 2294 51.9
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1919.4 2206 53.4
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1917.9 2312 51.1
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1916.7 2228 52.6
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1911.7 2298 52.0
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1900.6 2273 51.5
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1888.2 2344 50.4
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1882.8 2297 50.9
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1875.9 2294 50.7
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1853.2 2288 51.0
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1852.0 2349 49.8
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1847.8 2233 52.1
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1847.4 2359 49.5
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1844.7 2266 50.5
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1842.4 2293 50.5
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1834.7 2268 50.8
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1832.8 2081 53.0
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1829.7 2275 50.3
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1828.5 2082 53.3
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1820.4 1974 54.9
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1813.1 2332 49.6
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1811.2 2300 50.4
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1792.3 2255 50.3
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1773.4 2255 49.5
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1757.7 2279 49.3
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1738.8 2281 49.2
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1738.4 2276 48.9
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1736.1 2192 50.0
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1728.8 2273 49.1
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1694.9 2294 47.8
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1694.5 2224 48.3
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1689.9 2269 47.6
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1689.9 2279 47.9
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1687.2 2260 48.1
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1681.4 2297 48.1
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1681.0 2160 48.9
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1666.0 2271 47.6
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1663.3 2290 47.2
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1662.1 2304 47.2
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1656.7 2299 47.2
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1558.9 2257 45.4
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1509.6 2409 43.5
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1502.3 1449 57.8
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1430.2 1484 55.3
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1382.9 1292 58.5
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 0.0e+00 1353.2 1344 61.0
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1335.1 2243 42.4
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1285.0 2326 39.9
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1268.8 1508 52.3
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1260.7 2240 40.0
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1180.6 1657 47.1
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 0.0e+00 1154.4 1397 52.6
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1086.6 1378 50.9
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 1.3e-300 1037.7 818 67.4
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 6.4e-284 982.2 1297 49.6
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 2.2e-276 957.2 1271 49.0
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 2.1e-234 817.8 1159 43.4
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 8.5e-220 769.2 817 62.7
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 4.2e-219 766.9 817 62.7
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 2.7e-181 641.3 952 50.3
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.2e-178 632.5 1849 30.3
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.8e-177 626.7 1019 42.4
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.2e-167 595.1 490 62.9
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 9.2e-166 589.7 852 50.9
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.0e-164 586.3 618 58.7
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 9.6e-147 526.6 1043 42.0
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.2e-134 485.0 970 37.7
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 7.2e-126 457.2 426 56.3
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 2.0e-120 439.1 1728 27.7
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 4.6e-117 427.9 1428 28.3
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 1.6e-109 402.9 343 64.1
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 5.3e-97 361.3 278 64.0
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 6.8e-84 317.8 895 31.8
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.5e-78 300.1 215 71.2
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 7.5e-75 287.7 1910 23.5
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 5.6e-70 271.6 311 52.1
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 3.3e-62 245.7 481 44.7
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 2.8e-61 242.7 448 45.8
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 5.4e-57 228.4 180 69.4
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.5e-56 225.7 380 39.2
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 5.1e-55 221.9 473 41.9
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.8e-52 213.4 327 42.8
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.9e-50 205.3 584 33.4
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 2.1e-48 199.9 192 69.8
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.5e-46 193.7 752 33.5
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.6e-45 190.3 327 39.4
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-44 187.6 162 63.6
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 6.0e-40 171.8 135 62.2
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 1.0e-39 171.0 235 50.6
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 4.3e-38 165.6 208 46.2
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 3.1e-36 159.5 302 36.1
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 3.9e-31 142.5 176 53.4
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.6e-30 138.7 328 34.5
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 5.3e-28 132.1 165 47.9
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.8e-26 125.9 128 59.4
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.2e-25 122.9 116 64.7
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.4e-22 111.7 269 30.9
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 1.8e-20 107.1 136 53.7
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.4e-19 102.8 111 55.0
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.1e-14 87.8 69 69.6
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.0e-11 77.0 392 29.1
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.4e-11 76.3 222 36.5
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 1.9e-09 70.5 105 47.6
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 2.7e-08 66.6 244 28.7
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 1.8e-07 63.9 45 73.3
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 2.3e-07 63.5 59 61.0
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 2.3e-07 63.5 122 34.4
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 3.0e-07 63.2 69 52.2
SEGI_20776 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.5e-06 60.8 41 63.4
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 3.3e-06 59.7 86 40.7


User provided reference genes

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