Gene: COL.COLO4_29556

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_29556
  • Transcript Identifier COL.rna28273
  • Gene Type Coding gene
  • Location AWUE01020373.1 : 9130-26419 : positive

Gene Family Information

  • ID HOM05D004426
  • #Genes/#Species 162/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna28273
  • GenBank OMO68592.1
  • id gene29528
  • gene_name COLO4_29556
  • uniprot A0A1R3HE28

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G05680
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT3G05680
GO:0080009
ISO
PLAZA Integrative OrthologymRNA methylation AT3G05680

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008174
ISO
PLAZA Integrative OrthologymRNA methyltransferase activity AT3G05680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0005634
IEA
GOA Databasenucleus
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G05680
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT3G05680

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032675 Leucine-rich repeat domain superfamily
IPR026736 Protein virilizer
IPR003591 Leucine-rich repeat, typical subtype
IPR031801 Virilizer, N-terminal
IPR001611 Leucine-rich repeat
IPR013210 Leucine-rich repeat-containing N-terminal, plant-type
Mapman id Description
16.5.8.1.1.4 RNA processing.RNA modification.mRNA methylation.adenosine N6-methylation.adenosine N6-methyltransferase complex.regulatory component VIR
26.9.1.3.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.nematode elicitor response.receptor protein kinase (NILR)