Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.7e-127 458.8 242 100.0
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.7e-105 385.2 243 82.3
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.1e-103 379.4 242 84.3
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 7.8e-103 377.5 243 80.2
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.3e-102 376.7 242 83.5
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 5.1e-102 374.8 242 82.6
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.1e-102 374.8 239 81.2
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 8.6e-102 374.0 242 81.8
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 5.6e-101 371.3 243 81.1
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 7.3e-101 370.9 242 81.4
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 7.3e-101 370.9 242 81.8
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 9.5e-101 370.5 237 81.0
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-100 369.4 243 80.2
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 6.2e-100 367.9 243 81.5
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.1e-100 367.5 242 79.8
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.1e-99 367.1 243 80.2
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.3e-99 365.9 246 78.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 6.8e-99 364.4 243 79.4
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 8.9e-99 364.0 243 79.0
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.5e-98 363.2 240 80.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.5e-98 363.2 242 80.6
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.0e-98 362.8 239 78.7
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 4.4e-98 361.7 242 77.3
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.3e-97 360.1 239 79.1
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 3.7e-97 358.6 228 84.2
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.4e-96 355.9 242 77.3
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.4e-96 355.9 239 76.6
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.4e-96 355.9 239 77.8
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.2e-96 355.5 242 77.7
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.2e-96 355.5 247 77.7
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 5.4e-96 354.8 239 78.2
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 7.1e-96 354.4 242 77.3
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 9.2e-96 354.0 242 77.3
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.2e-95 353.6 242 78.1
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.6e-95 353.2 239 77.8
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.7e-95 352.4 242 76.9
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.0e-94 350.5 239 77.0
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.0e-94 350.5 243 77.4
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.0e-94 350.5 242 76.4
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.7e-94 349.7 228 81.6
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.7e-94 349.7 240 77.5
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.0e-94 349.0 242 76.9
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 3.0e-94 349.0 243 77.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.0e-94 349.0 243 76.5
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.9e-94 348.6 240 76.2
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.1e-94 348.2 242 77.3
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 5.1e-94 348.2 242 77.7
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.6e-94 347.8 249 74.3
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 6.6e-94 347.8 241 74.3
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 8.6e-94 347.4 242 76.9
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.1e-93 347.1 243 76.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.5e-93 346.7 242 76.9
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.9e-93 346.3 242 76.0
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.5e-93 345.9 239 77.4
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 3.3e-93 345.5 241 73.9
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 4.3e-93 345.1 239 77.4
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 5.6e-93 344.7 239 77.8
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.6e-93 344.7 243 76.1
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 7.3e-93 344.4 242 76.4
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 7.3e-93 344.4 238 76.9
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 7.3e-93 344.4 239 75.7
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.2e-92 343.6 241 73.9
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.6e-92 343.2 239 76.2
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.8e-92 342.4 241 75.1
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 3.6e-92 342.0 241 73.9
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 4.7e-92 341.7 242 73.6
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 6.2e-92 341.3 242 75.6
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 8.1e-92 340.9 243 74.5
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.8e-91 339.7 242 75.2
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.8e-91 339.7 241 73.4
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.8e-91 339.7 238 74.4
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.8e-91 339.7 240 75.0
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 5.2e-91 338.2 209 81.3
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.5e-90 336.7 239 74.9
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.5e-90 336.7 242 74.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.0e-90 336.3 239 72.4
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.0e-90 336.3 243 73.7
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 5.8e-90 334.7 242 75.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 2.2e-89 332.8 243 72.4
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.2e-89 332.8 197 86.8
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-89 332.4 239 73.6
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-89 332.4 239 73.6
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.9e-89 332.4 239 74.5
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 6.4e-89 331.3 239 72.8
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 8.4e-89 330.9 242 72.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 8.4e-89 330.9 199 86.4
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 8.4e-89 330.9 241 71.8
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 4.2e-88 328.6 234 73.1
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.2e-87 327.0 227 74.0
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.1e-87 326.2 239 70.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 4.6e-87 325.1 239 70.3
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 7.8e-87 324.3 210 84.3
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.0e-86 322.4 233 72.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 6.6e-86 321.2 209 80.4
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 8.7e-86 320.9 229 74.2
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.5e-85 319.3 237 72.6
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 3.3e-85 318.9 196 84.2
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.3e-85 318.9 237 72.6
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 3.3e-85 318.9 245 69.8
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.3e-85 318.5 241 70.5
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.3e-85 318.5 203 79.8
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 5.6e-85 318.2 241 70.1
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.6e-84 316.6 202 81.2
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.1e-84 316.2 243 70.4
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.8e-84 315.1 241 69.3
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 4.8e-84 315.1 241 70.1
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 8.1e-84 314.3 244 69.7
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.1e-83 313.9 193 83.4
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.4e-83 312.8 241 69.7
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 5.3e-83 311.6 241 69.3
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 4.4e-82 308.5 243 68.3
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 9.9e-82 307.4 202 77.2
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.9e-81 305.8 243 68.3
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.4e-80 303.5 241 67.2
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 9.3e-80 300.8 203 77.3
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 4.6e-79 298.5 228 68.4
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 4.6e-79 298.5 228 68.4
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.5e-77 293.5 228 67.5
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.5e-77 293.5 228 67.5
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 9.6e-77 290.8 183 81.4
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 4.0e-75 285.4 178 79.8
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 7.6e-74 281.2 227 66.5
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.2e-73 279.6 197 73.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 2.2e-73 279.6 238 62.2
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.4e-67 260.4 219 62.6
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.6e-63 246.9 244 58.6
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 2.5e-61 239.6 216 63.9
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.1e-59 234.2 191 66.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.2e-58 230.7 151 76.8
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 6.5e-57 224.9 170 72.4
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.9e-49 199.5 133 74.4
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 5.0e-49 198.7 242 53.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.7e-44 182.6 111 77.5
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 3.6e-39 166.0 176 51.7
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 4.4e-37 159.1 173 51.4
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.3e-36 157.5 105 73.3
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 5.9e-34 148.7 130 62.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 4.8e-28 129.0 188 41.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.1e-27 125.9 86 67.4
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.3e-25 120.9 91 76.9
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 4.0e-22 109.4 90 70.0
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.1e-16 91.3 190 32.1
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.5e-16 89.0 56 82.1
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 1.4e-11 74.3 79 59.5
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 7.0e-11 72.0 87 50.6
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.7e-10 70.1 62 67.7
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 5.9e-10 68.9 222 26.6
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 8.6e-09 65.1 54 70.4


User provided reference genes

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