Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07104 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 8.2e-117 423.7 210 100.0
Rhsim09G0080900 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.3e-21 107.5 91 65.9
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.7e-21 107.1 125 54.4
Hma1.2p1_2160F.1_g315570 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 3.8e-21 105.9 157 44.6
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.4e-20 104.0 123 53.7
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.4e-20 104.0 123 53.7
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.9e-20 103.6 125 51.2
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 1.9e-20 103.6 125 50.4
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-20 103.6 125 50.4
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-20 103.6 125 50.4
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-20 103.6 125 50.4
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.5e-20 103.2 152 44.7
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 3.2e-20 102.8 130 48.5
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 5.5e-20 102.1 125 50.4
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 5.5e-20 102.1 125 48.0
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 7.2e-20 101.7 130 47.7
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 7.2e-20 101.7 125 48.8
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 7.2e-20 101.7 126 49.2
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 9.4e-20 101.3 125 49.6
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 9.4e-20 101.3 108 53.7
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.2e-19 100.9 125 48.0
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 1.2e-19 100.9 125 48.0
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.6e-19 100.5 130 47.7
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.6e-19 100.5 125 49.6
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 1.6e-19 100.5 125 49.6
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 2.1e-19 100.1 130 48.5
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 2.1e-19 100.1 125 50.4
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 2.1e-19 100.1 130 47.7
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 2.7e-19 99.8 125 48.8
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 2.7e-19 99.8 125 49.6
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 2.7e-19 99.8 125 48.8
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 3.6e-19 99.4 125 49.6
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 3.6e-19 99.4 125 49.6
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 4.6e-19 99.0 125 49.6
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 4.6e-19 99.0 125 49.6
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 4.6e-19 99.0 125 49.6
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 4.6e-19 99.0 125 48.8
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.6e-19 99.0 152 43.4
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 4.6e-19 99.0 125 48.8
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 6.1e-19 98.6 125 48.8
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 6.1e-19 98.6 125 48.8
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 6.1e-19 98.6 130 46.9
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 7.9e-19 98.2 125 47.2
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 7.9e-19 98.2 125 48.8
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 7.9e-19 98.2 125 48.0
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 7.9e-19 98.2 125 47.2
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 7.9e-19 98.2 125 48.0
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 1.0e-18 97.8 125 47.2
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 1.0e-18 97.8 125 49.6
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 1.0e-18 97.8 125 48.0
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 1.0e-18 97.8 125 48.8
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 1.0e-18 97.8 125 48.8
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 1.4e-18 97.4 125 48.8
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 1.4e-18 97.4 125 48.8
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.4e-18 97.4 125 48.0
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.8e-18 97.1 125 48.8
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.8e-18 97.1 125 48.8
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.8e-18 97.1 125 47.2
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 2.3e-18 96.7 125 49.6
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 2.3e-18 96.7 125 48.0
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.3e-18 96.7 125 48.8
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 2.3e-18 96.7 125 48.8
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 2.3e-18 96.7 125 47.2
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 3.0e-18 96.3 125 48.8
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 3.0e-18 96.3 125 48.0
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 3.0e-18 96.3 125 46.4
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 3.0e-18 96.3 125 48.8
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 3.0e-18 96.3 152 42.8
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.0e-18 96.3 125 48.8
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 3.9e-18 95.9 125 48.0
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 3.9e-18 95.9 122 48.4
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 5.1e-18 95.5 152 41.4
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 5.1e-18 95.5 130 45.4
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 5.1e-18 95.5 125 48.8
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 5.1e-18 95.5 125 48.0
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 5.1e-18 95.5 125 48.0
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 5.1e-18 95.5 125 47.2
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 6.7e-18 95.1 125 45.6
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 6.7e-18 95.1 125 44.8
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 6.7e-18 95.1 125 46.4
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 6.7e-18 95.1 125 46.4
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.7e-18 95.1 125 46.4
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 6.7e-18 95.1 125 48.0
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 6.7e-18 95.1 125 47.2
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 8.8e-18 94.7 125 46.4
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 8.8e-18 94.7 125 47.2
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 8.8e-18 94.7 125 44.8
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 8.8e-18 94.7 125 48.0
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 8.8e-18 94.7 125 46.4
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 1.1e-17 94.4 152 40.1
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 1.1e-17 94.4 128 46.9
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 1.5e-17 94.0 123 46.3
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.5e-17 94.0 125 48.0
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 2.0e-17 93.6 125 47.2
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 2.0e-17 93.6 152 40.1
TWI09G0750 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 2.0e-17 93.6 125 46.4
COL.COLO4_15050 Corchorus olitorius HOM05D002263 ORTHO05D003537 2.5e-17 93.2 123 49.6
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 3.3e-17 92.8 125 45.6
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 3.3e-17 92.8 125 45.6
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 3.3e-17 92.8 152 40.8
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 3.3e-17 92.8 125 44.8
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 3.3e-17 92.8 125 48.0
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 3.3e-17 92.8 125 48.0
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 3.3e-17 92.8 131 43.5
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 3.3e-17 92.8 125 46.4
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 4.3e-17 92.4 125 44.8
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 4.3e-17 92.4 125 44.8
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 4.3e-17 92.4 125 44.8
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 4.3e-17 92.4 125 44.8
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 4.3e-17 92.4 125 47.2
SEGI_10251 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 4.3e-17 92.4 152 40.8
AL8G14170 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 5.7e-17 92.0 121 48.8
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 7.4e-17 91.7 152 40.8
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 9.7e-17 91.3 152 39.5
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 1.7e-16 90.5 125 45.6
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 1.7e-16 90.5 116 46.6
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 2.2e-16 90.1 131 44.3
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.2e-16 90.1 125 44.8
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 2.2e-16 90.1 125 45.6
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 2.2e-16 90.1 125 45.6
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 2.8e-16 89.7 125 44.8
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 3.7e-16 89.4 130 42.3
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 3.7e-16 89.4 125 44.8
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 4.8e-16 89.0 125 44.0
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 6.3e-16 88.6 152 39.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 6.3e-16 88.6 125 44.8
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 8.2e-16 88.2 125 44.8
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 1.1e-15 87.8 125 42.4
Hma1.2p1_2118F.1_g314330 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.1e-15 87.8 89 51.7
SEGI_32368 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 1.1e-15 87.8 129 42.6
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 1.4e-15 87.4 125 44.8
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.4e-15 87.4 125 44.0
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 1.4e-15 87.4 130 41.5
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.8e-15 87.0 125 43.2
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.4e-15 86.7 122 44.3
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 2.4e-15 86.7 125 44.8
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 3.1e-15 86.3 122 44.3
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 3.1e-15 86.3 125 44.0
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 4.1e-15 85.9 152 39.5
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 6.9e-15 85.1 125 42.4
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 4.5e-14 82.4 121 43.8
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 7.7e-14 81.6 122 40.2
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 2.9e-13 79.7 127 39.4
vmacro14249 Vaccinium macrocarpon HOM05D000147 ORTHO05D426508 5.0e-13 79.0 40 90.0
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 5.5e-12 75.5 125 37.6
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 1.4e-10 70.9 40 80.0
Os01g0234200 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 3.0e-10 69.7 127 36.2
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 6.7e-10 68.6 116 38.8
AL8G27570 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.1e-09 67.8 40 77.5
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 2.6e-09 66.6 111 43.2
Psat0s797g0200 Pisum sativum HOM05D002263 ORTHO05D003537 3.3e-09 66.2 38 73.7
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 4.4e-09 65.9 118 37.3
Sc11g0009090 Simmondsia chinensis HOM05D002263 ORTHO05D003537 6.3e-08 62.0 124 33.9
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 8.2e-08 61.6 41 80.5
Sabra16G0162200 Salix brachista HOM05D002263 ORTHO05D016312 8.2e-08 61.6 33 81.8
Hma1.2p1_0570F.1_g180510 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.4e-07 60.8 38 65.8
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.8e-07 60.5 41 78.0
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 2.4e-07 60.1 93 39.8
Hma1.2p1_0214F.1_g090820 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 5.3e-07 58.9 37 73.0
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 2.0e-06 57.0 41 73.2
SEGI_24160 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 4.5e-06 55.8 37 67.6
Medtr8g447140 Medicago truncatula HOM05D002263 ORTHO05D003537 5.9e-06 55.5 45 55.6
Psat5g022880 Pisum sativum HOM05D019765 ORTHO05D003537 5.9e-06 55.5 58 50.0


User provided reference genes

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