Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 1.4e-290 1002.3 509 100.0
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 5.1e-213 744.6 447 85.2
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 1.7e-200 703.0 478 77.2
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 1.5e-193 679.9 492 71.3
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 5.7e-172 608.2 464 70.5
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.1e-167 594.0 468 69.2
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 4.2e-167 592.0 426 72.8
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 8.0e-166 587.8 544 60.7
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.0e-165 587.4 456 68.6
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 8.8e-165 584.3 457 67.8
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 6.3e-163 578.2 542 59.8
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.1e-162 577.4 516 62.6
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 1.4e-162 577.0 511 63.6
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 1.6e-161 573.5 444 69.6
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 2.0e-161 573.2 550 59.5
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 5.9e-161 571.6 551 59.2
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.3e-160 570.5 556 59.4
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 2.9e-160 569.3 446 69.1
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 6.6e-160 568.2 517 62.7
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 6.6e-160 568.2 507 63.3
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 5.5e-159 565.1 526 59.3
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 4.0e-157 558.9 494 63.4
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 2.0e-156 556.6 607 53.7
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 2.0e-156 556.6 448 69.2
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 2.6e-156 556.2 418 70.6
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.4e-156 555.8 599 54.6
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.5e-156 554.7 582 55.3
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 9.8e-156 554.3 599 54.4
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 9.8e-156 554.3 496 61.5
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 9.8e-156 554.3 423 68.8
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 4.9e-155 552.0 534 58.4
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 3.1e-154 549.3 403 73.0
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 4.1e-154 548.9 511 61.4
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 5.4e-154 548.5 433 67.2
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 5.9e-153 545.0 452 66.6
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 7.8e-153 544.7 474 65.0
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 1.0e-152 544.3 535 58.9
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 1.0e-152 544.3 578 55.0
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.7e-152 543.5 416 68.8
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.7e-152 543.5 557 57.8
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 3.8e-152 542.3 406 71.7
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.5e-151 540.4 481 63.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.6e-150 537.0 577 55.8
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 2.1e-150 536.6 574 55.1
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 6.1e-150 535.0 413 68.8
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 8.0e-150 534.6 501 60.1
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.4e-149 533.9 618 51.8
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 5.2e-149 531.9 496 61.7
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 1.2e-148 530.8 357 77.3
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 1.5e-148 530.4 535 56.6
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 2.0e-148 530.0 490 60.6
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 2.6e-148 529.6 471 63.3
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.1e-146 524.2 341 76.5
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.9e-146 523.5 507 58.2
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 2.4e-146 523.1 492 59.8
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.2e-146 522.7 616 51.1
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 3.2e-146 522.7 401 68.3
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 9.2e-146 521.2 362 74.9
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 7.8e-145 518.1 506 58.1
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 7.3e-143 511.5 497 58.6
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 2.1e-142 510.0 340 77.4
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 2.8e-142 509.6 457 63.7
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 4.0e-141 505.8 404 68.1
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 6.8e-141 505.0 447 62.4
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 2.6e-140 503.1 332 79.8
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 8.3e-139 498.0 404 66.8
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 3.0e-136 489.6 495 55.6
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 5.1e-136 488.8 319 77.7
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 4.3e-135 485.7 433 61.2
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 5.6e-135 485.3 318 77.4
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 1.8e-133 480.3 421 61.8
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 2.3e-133 479.9 448 59.4
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 5.2e-133 478.8 437 59.3
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 6.8e-133 478.4 447 60.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 6.8e-133 478.4 443 59.1
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 8.9e-133 478.0 444 59.5
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 5.8e-132 475.3 505 53.9
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.6e-129 467.2 533 52.2
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 1.3e-128 464.2 410 62.9
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 5.1e-128 462.2 530 52.6
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 8.6e-128 461.5 547 52.3
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.1e-127 461.1 449 61.0
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.1e-127 461.1 449 61.0
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 2.5e-127 459.9 369 68.0
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 2.5e-127 459.9 445 60.4
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 7.3e-127 458.4 350 66.0
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.1e-126 456.8 410 64.6
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 6.8e-125 451.8 467 55.5
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 8.4e-123 444.9 406 58.6
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 1.9e-122 443.7 539 51.9
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 5.4e-122 442.2 447 57.3
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 4.7e-118 429.1 291 77.7
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 2.0e-116 423.7 285 77.5
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 2.0e-116 423.7 285 77.5
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 3.4e-116 422.9 285 77.5
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 1.7e-112 410.6 514 50.0
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 5.7e-79 299.3 360 48.1
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 8.5e-75 285.4 290 52.1
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 9.4e-74 282.0 175 80.0
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 2.3e-72 277.3 321 48.6
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 9.7e-71 271.9 214 69.6
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 1.1e-66 258.5 277 52.0
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 3.7e-62 243.4 180 70.0
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 1.7e-54 218.0 209 57.9
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.1e-53 213.4 541 33.3
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.2e-52 211.8 287 44.9
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 6.5e-51 206.1 156 71.8
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 1.2e-49 201.8 353 39.1
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 2.1e-49 201.1 299 40.8
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 1.7e-46 191.4 285 42.8
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 1.0e-35 155.6 285 39.6
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 3.9e-35 153.7 151 51.0
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 1.7e-30 138.3 266 37.2
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 2.6e-23 114.4 83 65.1
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 4.1e-21 107.1 96 64.6
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.2e-17 95.5 77 57.1
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.2e-17 95.5 77 57.1
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 2.1e-17 94.7 77 55.8
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 3.4e-15 87.4 73 57.5
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 1.7e-14 85.1 73 56.2
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 6.4e-14 83.2 239 29.3
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 8.3e-14 82.8 71 53.5
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 2.4e-13 81.3 56 67.9
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 2.4e-13 81.3 56 67.9
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 1.7e-11 75.1 64 57.8
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 2.1e-09 68.2 79 53.2
Dinv40374 Davidia involucrata HOM05D032807 ORTHO05D181779 3.1e-08 64.3 117 38.5
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 4.0e-08 63.9 185 33.5
Medtr8g046830 Medicago truncatula HOM05D005801 ORTHO05D008555 2.6e-07 61.2 56 60.7
Dinv01186 Davidia involucrata HOM05D032807 ORTHO05D008555 7.6e-07 59.7 114 38.6
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 9.9e-07 59.3 185 32.4
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 3.8e-06 57.4 89 43.8
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 3.8e-06 57.4 89 43.8
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 3.8e-06 57.4 185 30.8
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 4.9e-06 57.0 183 30.6


User provided reference genes

Program Settings