Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 7.5e-156 553.9 300 100.0
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.1e-133 480.3 351 74.9
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 8.7e-128 460.7 308 79.9
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.9e-127 459.5 308 79.5
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.6e-126 456.4 308 78.6
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 3.6e-126 455.3 301 80.1
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 4.0e-125 451.8 296 79.1
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 4.0e-125 451.8 310 78.4
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 6.9e-125 451.1 308 77.3
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 6.9e-125 451.1 308 77.3
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.0e-125 450.7 306 79.4
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 9.0e-125 450.7 312 77.6
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 4.5e-124 448.4 310 77.7
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.3e-123 446.8 296 78.4
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.7e-123 446.4 312 75.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 2.9e-123 445.7 308 75.0
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.8e-123 445.3 298 76.8
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 3.8e-123 445.3 295 78.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 4.9e-123 444.9 308 75.6
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 6.4e-123 444.5 314 77.1
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 8.4e-123 444.1 316 75.9
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.4e-122 442.6 319 74.3
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 2.4e-122 442.6 314 77.1
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 3.2e-122 442.2 309 75.7
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.2e-122 442.2 296 77.4
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.2e-122 442.2 310 75.2
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 5.5e-122 441.4 316 75.6
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 7.1e-122 441.0 296 77.0
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 2.1e-121 439.5 321 75.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.7e-121 439.1 310 74.8
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 6.0e-121 438.0 296 78.0
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 6.0e-121 438.0 305 77.7
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 6.0e-121 438.0 312 75.6
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 7.9e-121 437.6 298 76.5
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 1.0e-120 437.2 315 74.6
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.0e-120 437.2 297 77.4
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.3e-120 436.8 288 77.8
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.3e-120 436.8 296 77.0
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.8e-120 436.4 308 73.7
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.3e-120 436.0 296 76.4
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 2.3e-120 436.0 289 78.5
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.3e-120 436.0 313 76.0
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 5.1e-120 434.9 295 76.6
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.1e-120 434.9 319 73.0
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 8.7e-120 434.1 319 74.3
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.1e-119 433.7 308 74.4
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.9e-119 433.0 296 76.0
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.9e-119 433.0 296 75.7
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.5e-119 432.6 340 71.5
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.5e-119 432.6 319 73.4
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 4.3e-119 431.8 296 75.3
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 7.4e-119 431.0 309 72.8
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 9.6e-119 430.6 321 72.9
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 2.8e-118 429.1 309 72.8
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.7e-118 428.7 345 70.1
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 6.2e-118 427.9 306 75.2
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.2e-118 427.9 322 72.0
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 8.1e-118 427.6 336 71.1
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 8.1e-118 427.6 310 75.5
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 4.0e-117 425.2 308 73.7
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 6.9e-117 424.5 300 74.0
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 9.0e-117 424.1 308 73.7
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.2e-116 423.7 296 74.3
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.2e-116 423.7 296 74.3
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 1.2e-116 423.7 308 73.7
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.2e-116 423.7 308 72.1
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 2.6e-116 422.5 312 71.5
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.6e-116 422.5 300 73.7
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 3.4e-116 422.2 306 71.6
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 7.6e-116 421.0 290 75.5
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 2.9e-115 419.1 306 71.6
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.9e-115 419.1 311 71.4
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.5e-115 417.9 310 73.5
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 8.4e-115 417.5 316 71.8
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.9e-114 416.4 320 70.9
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 5.5e-114 414.8 322 71.4
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.6e-113 413.3 327 69.1
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 2.1e-113 412.9 313 71.2
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.8e-112 409.8 316 68.4
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.8e-112 409.8 296 71.3
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 3.0e-112 409.1 306 68.6
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 5.1e-112 408.3 333 67.3
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 6.7e-112 407.9 309 69.6
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.5e-111 406.8 303 74.9
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 3.3e-111 405.6 310 70.3
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 5.7e-111 404.8 315 69.8
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 7.4e-111 404.4 305 71.8
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.3e-110 403.7 357 64.1
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.1e-110 402.9 317 69.7
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 3.7e-110 402.1 314 69.7
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 3.7e-110 402.1 314 69.7
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 3.7e-110 402.1 309 68.3
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 6.3e-110 401.4 296 70.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.4e-109 399.4 315 69.5
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 5.3e-109 398.3 314 70.7
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.6e-108 396.0 310 66.5
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 3.4e-108 395.6 296 70.3
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 4.5e-108 395.2 281 75.1
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 6.5e-107 391.3 308 69.8
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 5.5e-106 388.3 296 69.6
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 5.5e-106 388.3 296 69.6
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 3.0e-104 382.5 299 66.2
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 6.7e-104 381.3 299 66.6
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-103 380.6 287 66.6
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 7.4e-103 377.9 299 65.9
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.7e-103 377.5 308 64.9
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 3.8e-99 365.5 288 69.8
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 2.5e-98 362.8 305 67.2
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 3.7e-94 349.0 256 71.9
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.8e-94 348.6 287 63.4
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 6.9e-93 344.7 245 73.9
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 7.2e-90 334.7 247 71.7
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.6e-89 333.6 314 62.4
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.7e-89 332.8 316 62.0
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 4.5e-84 315.5 278 62.2
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.7e-84 314.7 223 73.5
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.5e-82 310.5 179 87.2
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.0e-80 302.4 262 60.7
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 6.7e-80 301.6 179 83.8
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.3e-78 297.4 302 54.3
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.4e-77 293.1 313 52.1
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 2.7e-76 289.7 304 53.6
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 8.5e-75 284.6 248 66.5
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.6e-73 280.4 179 79.3
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.7e-73 279.6 269 58.4
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 6.1e-73 278.5 294 56.5
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 3.0e-72 276.2 322 52.2
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 4.0e-72 275.8 211 71.6
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.8e-70 268.9 222 61.3
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 7.2e-66 255.0 244 61.5
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.2e-65 254.2 199 67.8
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 2.7e-65 253.1 287 50.5
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.0e-60 236.9 147 80.3
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 9.2e-45 184.9 116 79.3
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 4.4e-39 166.0 106 84.0
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 4.9e-38 162.5 108 77.8
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 6.6e-35 152.1 94 77.7
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 6.6e-35 152.1 139 60.4
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.1e-33 147.1 105 75.2
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 6.2e-33 145.6 135 64.4
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 8.1e-33 145.2 283 34.6
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.8e-30 136.3 89 86.5
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.2e-28 131.3 127 59.1
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.2e-28 131.3 168 47.6
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 4.6e-28 129.4 88 76.1
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.1e-26 124.8 66 87.9
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 7.3e-26 122.1 90 75.6
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.1e-25 120.6 118 61.0
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 2.8e-25 120.2 118 59.3
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 2.8e-25 120.2 118 59.3
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 3.6e-25 119.8 105 65.7
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.4e-24 117.9 118 59.3
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.4e-24 117.9 118 59.3
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 2.4e-24 117.1 118 59.3
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 5.2e-24 115.9 289 28.7
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 2.6e-23 113.6 118 58.5
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 7.6e-23 112.1 118 57.6
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.6e-20 104.4 272 30.5
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.1e-20 104.0 281 28.8
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 5.1e-19 99.4 155 40.0
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.1e-18 98.2 87 60.9
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 9.6e-18 95.1 149 40.9
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.3e-17 94.7 57 86.0
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 8.1e-17 92.0 83 62.7
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.9e-14 83.6 50 74.0
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.1e-13 81.6 53 73.6


User provided reference genes

Program Settings