Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03844 Vaccinium macrocarpon HOM05D002794 ORTHO05D022239 1.7e-68 263.1 194 100.0
RhsimUnG0043900 Rhododendron simsii HOM05D002794 ORTHO05D022239 2.3e-33 146.4 142 69.0
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 1.3e-31 140.6 190 68.4
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 2.9e-31 139.4 192 62.0
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 4.9e-31 138.7 193 64.8
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 4.9e-31 138.7 193 64.8
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 2.1e-29 133.3 117 70.9
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 4.6e-29 132.1 119 64.7
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 5.1e-28 128.6 189 61.4
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 1.5e-27 127.1 189 58.2
Ca_25735_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 3.3e-27 125.9 117 65.0
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 4.3e-27 125.6 119 74.8
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 7.3e-27 124.8 117 71.8
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 9.5e-27 124.4 122 65.6
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 1.2e-26 124.0 191 60.7
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 1.2e-26 124.0 190 59.5
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 1.6e-26 123.6 198 51.5
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 1.6e-26 123.6 124 61.3
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 1.6e-26 123.6 118 71.2
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 2.1e-26 123.2 171 63.7
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 2.8e-26 122.9 122 72.1
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 2.8e-26 122.9 189 60.3
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 2.8e-26 122.9 119 70.6
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 3.6e-26 122.5 121 66.9
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 3.6e-26 122.5 191 67.0
Actinidia01901 Actinidia chinensis HOM05D002794 ORTHO05D003763 4.7e-26 122.1 191 68.6
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 8.1e-26 121.3 122 59.8
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 4.0e-25 119.0 110 70.9
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 4.0e-25 119.0 194 58.8
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 4.0e-25 119.0 123 70.7
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 4.0e-25 119.0 121 69.4
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 4.0e-25 119.0 121 66.9
Nitab4.5_0003063g0060 Nicotiana tabacum HOM05D002794 ORTHO05D003763 8.9e-25 117.9 118 68.6
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 1.2e-24 117.5 121 64.5
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 1.5e-24 117.1 115 65.2
Peaxi162Scf01163g00119 Petunia axillaris HOM05D002794 ORTHO05D003763 1.5e-24 117.1 203 52.7
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.6e-24 116.3 123 65.9
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 2.6e-24 116.3 122 73.0
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 2.6e-24 116.3 191 58.1
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 3.4e-24 115.9 116 69.0
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 4.4e-24 115.5 122 67.2
Nitab4.5_0003668g0030 Nicotiana tabacum HOM05D002794 ORTHO05D003763 4.4e-24 115.5 128 61.7
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 5.8e-24 115.2 117 65.0
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 7.6e-24 114.8 112 72.3
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 1.7e-23 113.6 112 73.2
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 1.7e-23 113.6 195 52.3
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 2.2e-23 113.2 191 59.7
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 2.2e-23 113.2 192 54.2
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 2.9e-23 112.8 193 61.1
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 3.8e-23 112.5 191 60.2
Lalb_Chr16g0383571 Lupinus albus HOM05D002794 ORTHO05D003763 3.8e-23 112.5 106 75.5
Nn1g04005 Nelumbo nucifera HOM05D002794 ORTHO05D003763 1.1e-22 110.9 129 65.9
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.4e-22 110.5 188 62.2
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 1.9e-22 110.2 188 58.5
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 1.9e-22 110.2 111 67.6
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 1.9e-22 110.2 113 68.1
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 2.4e-22 109.8 121 62.0
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 2.4e-22 109.8 112 60.7
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 4.1e-22 109.0 111 67.6
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 5.4e-22 108.6 186 57.5
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 7.1e-22 108.2 113 69.0
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 7.1e-22 108.2 109 72.5
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 9.2e-22 107.8 117 66.7
Dinv40533 Davidia involucrata HOM05D002794 ORTHO05D001608 9.2e-22 107.8 122 64.8
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 9.2e-22 107.8 125 68.8
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 1.6e-21 107.1 195 51.3
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 1.6e-21 107.1 131 63.4
C03p83140 Brassica napus HOM05D002794 ORTHO05D003763 2.7e-21 106.3 116 53.4
BraA08t33486Z Brassica rapa HOM05D002794 ORTHO05D003763 2.7e-21 106.3 116 54.3
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 2.7e-21 106.3 187 56.7
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 2.7e-21 106.3 187 56.7
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 3.5e-21 105.9 114 71.1
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 4.6e-21 105.5 121 66.9
BcaB03g11685 Brassica carinata HOM05D002794 ORTHO05D003763 1.0e-20 104.4 117 52.1
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 1.0e-20 104.4 191 58.1
vmacro15890 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 1.0e-20 104.4 190 61.6
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 1.3e-20 104.0 121 64.5
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 1.7e-20 103.6 121 67.8
A08p15050 Brassica napus HOM05D002794 ORTHO05D003763 2.3e-20 103.2 116 53.4
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 2.3e-20 103.2 124 58.1
BcaC01g00687 Brassica carinata HOM05D002794 ORTHO05D003763 3.0e-20 102.8 116 52.6
BolC3t20597H Brassica oleracea HOM05D002794 ORTHO05D003763 3.0e-20 102.8 116 52.6
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 3.9e-20 102.4 125 48.8
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 3.9e-20 102.4 102 55.9
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 3.9e-20 102.4 104 70.2
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 5.1e-20 102.1 117 65.0
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 6.6e-20 101.7 103 71.8
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 6.6e-20 101.7 194 58.2
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 1.1e-19 100.9 108 71.3
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 1.9e-19 100.1 123 63.4
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 1.9e-19 100.1 121 48.8
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.9e-19 100.1 118 66.1
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 2.5e-19 99.8 118 62.7
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 2.5e-19 99.8 108 70.4
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 4.3e-19 99.0 118 65.3
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 7.3e-19 98.2 123 61.0
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 7.3e-19 98.2 121 47.9
AUR62014781 Chenopodium quinoa HOM05D002794 ORTHO05D003763 9.6e-19 97.8 115 57.4
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 1.2e-18 97.4 121 62.0
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 1.2e-18 97.4 121 62.0
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 1.6e-18 97.1 118 48.3
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 2.1e-18 96.7 116 63.8
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 2.8e-18 96.3 107 64.5
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 6.2e-18 95.1 123 60.2
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 1.1e-17 94.4 121 46.3
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 1.1e-17 94.4 121 46.3
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 5.2e-17 92.0 115 56.5
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 8.9e-17 91.3 115 64.3
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 8.9e-17 91.3 131 58.8
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 2.6e-16 89.7 125 56.8
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 4.4e-16 89.0 116 62.9
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 7.6e-16 88.2 122 46.7
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 7.6e-16 88.2 100 60.0
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 7.6e-16 88.2 115 63.5
Sc05g0007870 Simmondsia chinensis HOM05D002794 ORTHO05D003763 9.9e-16 87.8 190 51.6
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 9.9e-16 87.8 114 49.1
Medtr2g072100 Medicago truncatula HOM05D002794 ORTHO05D022239 1.3e-15 87.4 97 64.9
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.3e-15 87.4 116 59.5
ATR0618G401 Amborella trichopoda HOM05D002794 ORTHO05D003763 2.9e-15 86.3 106 65.1
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 4.9e-15 85.5 189 53.4
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.1e-14 84.3 118 61.0
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 1.9e-14 83.6 118 61.0
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 3.2e-14 82.8 112 63.4
ATR0006G055 Amborella trichopoda HOM05D002794 ORTHO05D003763 4.2e-14 82.4 105 62.9
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 4.2e-14 82.4 121 57.9
QL05p019367 Quercus lobata HOM05D002794 ORTHO05D022239 9.3e-14 81.3 104 51.0
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 7.8e-13 78.2 109 57.8
SEGI_11918 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 7.8e-13 78.2 109 57.8
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 2.3e-12 76.6 121 57.9
Cpa.g.sc1028.1 Carica papaya HOM05D002794 ORTHO05D022239 5.1e-12 75.5 59 69.5
Aqoxy5G00583 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 8.7e-12 74.7 122 58.2
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 5.6e-11 72.0 190 47.9
AUR62016968 Chenopodium quinoa HOM05D002794 ORTHO05D003763 1.3e-10 70.9 103 58.3
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 2.1e-10 70.1 125 50.4
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 4.8e-10 68.9 122 57.4
vmacro04586 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 4.8e-10 68.9 107 43.0
Ciclev10006607m.g Citrus clementina HOM05D002794 ORTHO05D003763 1.4e-09 67.4 113 40.7
TPR.G29320 Trifolium pratense HOM05D000048 ORTHO05D037516 1.4e-09 67.4 83 68.7
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 1.8e-09 67.0 160 38.1
PSO675G3577 Papaver somniferum HOM05D002794 ORTHO05D003763 2.4e-09 66.6 117 53.8
PSO541G2705 Papaver somniferum HOM05D002794 ORTHO05D003763 1.5e-08 63.9 123 52.8
AagrBONN_evm.TU.Sc2ySwM_344.3345 Anthoceros agrestis HOM05D002794 ORTHO05D003763 2.2e-07 60.1 134 46.3
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 6.4e-07 58.5 97 55.7
COL.COLO4_31110 Corchorus olitorius HOM05D002794 ORTHO05D003763 1.1e-06 57.8 121 51.2
Lj1g0004029 Lotus japonicus HOM05D002794 ORTHO05D003763 1.1e-06 57.8 114 55.3
Pp3c14_10510 Physcomitrium patens HOM05D002794 ORTHO05D003763 1.1e-06 57.8 125 51.2
Ah.09g235770 Amaranthus hybridus HOM05D002794 ORTHO05D003763 1.4e-06 57.4 69 68.1
Haze_06521 Corylus avellana HOM05D002794 ORTHO05D003763 2.4e-06 56.6 101 52.5
FAN02G3067 Fragaria x ananassa HOM05D002794 ORTHO05D003763 3.2e-06 56.2 111 49.5
Glyma.07G194033 Glycine max HOM05D002794 ORTHO05D022239 5.4e-06 55.5 71 66.2
Atru.chr4.2241 Acer truncatum HOM05D002794 ORTHO05D003763 7.1e-06 55.1 60 53.3
Mapoly0051s0020 Marchantia polymorpha HOM05D002794 ORTHO05D003763 7.1e-06 55.1 109 43.1
CBR_g29963 Chara braunii HOM05D002794 ORTHO05D003763 9.3e-06 54.7 108 48.1
FvH4_6g45300 Fragaria vesca HOM05D002794 ORTHO05D003763 9.3e-06 54.7 111 48.6
FAN14G4862 Fragaria x ananassa HOM05D002794 ORTHO05D003763 9.3e-06 54.7 111 48.6


User provided reference genes

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